Wall clock time and date at job start Tue Mar 31 2020 23:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70442 * 124.59467 * 2 1 4 4 C 1.75508 * 92.44564 * 180.02562 * 3 2 1 5 5 C 1.32767 * 110.57696 * 359.73240 * 4 3 2 6 6 C 1.36013 * 124.58974 * 179.97438 * 2 1 3 7 7 C 1.47189 * 123.46082 * 359.97310 * 6 2 1 8 8 O 1.21640 * 120.00254 * 0.02562 * 7 6 2 9 9 N 1.34781 * 120.00291 * 179.97438 * 7 6 2 10 10 C 1.46496 * 120.00209 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47287 * 325.00796 * 10 9 7 12 12 C 1.53001 * 109.46799 * 84.99950 * 10 9 7 13 13 C 1.52992 * 109.47128 * 204.99948 * 10 9 7 14 14 H 1.08998 * 109.46862 * 65.00901 * 13 10 9 15 15 C 1.52997 * 109.47482 * 305.00336 * 13 10 9 16 16 N 1.46906 * 109.47164 * 184.99869 * 13 10 9 17 17 C 1.46897 * 111.00172 * 205.00386 * 16 13 10 18 18 C 1.50697 * 109.46908 * 180.02562 * 17 16 13 19 19 O 1.21287 * 120.00522 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99988 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00145 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99696 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00073 * 179.97438 * 21 20 18 24 24 N 1.31403 * 119.99964 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99837 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47393 * 89.99670 * 25 23 21 27 27 H 1.48499 * 109.47092 * 210.00201 * 25 23 21 28 28 H 1.48505 * 109.47050 * 329.99511 * 25 23 21 29 29 H 1.09000 * 109.46992 * 270.00544 * 1 2 3 30 30 H 1.09002 * 109.47171 * 30.00209 * 1 2 3 31 31 H 1.08998 * 109.47452 * 150.00451 * 1 2 3 32 32 H 1.08002 * 124.71296 * 179.97438 * 4 3 2 33 33 H 1.07995 * 123.46157 * 180.22666 * 5 4 3 34 34 H 0.96999 * 119.99262 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46924 * 60.00177 * 12 10 9 36 36 H 1.09000 * 109.47104 * 179.97438 * 12 10 9 37 37 H 1.08993 * 109.47832 * 299.99970 * 12 10 9 38 38 H 1.09002 * 109.47153 * 59.99783 * 15 13 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 15 13 10 40 40 H 1.09004 * 109.47261 * 179.97438 * 15 13 10 41 41 H 1.00896 * 110.99793 * 328.95910 * 16 13 10 42 42 H 1.09005 * 109.47066 * 299.99968 * 17 16 13 43 43 H 1.09001 * 109.47085 * 59.99954 * 17 16 13 44 44 H 0.97005 * 119.99644 * 359.97438 * 20 18 17 45 45 H 0.97005 * 120.00302 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4691 -0.0008 5 6 3.6943 -0.8315 0.0048 6 6 2.2791 -1.1197 0.0005 7 6 1.7289 -2.4849 0.0017 8 8 0.5245 -2.6553 0.0018 9 7 2.5596 -3.5463 0.0016 10 6 2.0120 -4.9051 0.0022 11 1 1.0956 -4.9272 0.5919 12 6 1.7041 -5.3314 -1.4346 13 6 3.0342 -5.8666 0.6116 14 1 3.1868 -5.6169 1.6615 15 6 4.3611 -5.7439 -0.1401 16 7 2.5356 -7.2442 0.5036 17 6 3.1287 -8.1014 1.5386 18 6 2.5953 -9.5036 1.3958 19 8 1.7990 -9.7632 0.5186 20 7 3.0023 -10.4690 2.2437 21 6 2.5167 -11.7445 2.1142 22 1 1.8076 -11.9756 1.3331 23 6 2.9367 -12.7399 2.9880 24 7 2.4708 -13.9623 2.8642 25 14 4.1626 -12.3400 4.3396 26 1 3.4319 -11.9204 5.5624 27 1 4.9791 -13.5436 4.6393 28 1 5.0515 -11.2380 3.8914 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5137 32 1 4.9538 0.8935 -0.0014 33 1 4.4575 -1.5956 0.0090 34 1 3.5200 -3.4104 0.0011 35 1 2.6205 -5.3092 -2.0244 36 1 1.2971 -6.3426 -1.4342 37 1 0.9759 -4.6465 -1.8688 38 1 4.7310 -4.7218 -0.0599 39 1 4.2083 -5.9937 -1.1900 40 1 5.0895 -6.4287 0.2944 41 1 1.5279 -7.2686 0.5477 42 1 4.2127 -8.1121 1.4243 43 1 2.8711 -7.7128 2.5238 44 1 3.6389 -10.2613 2.9456 45 1 2.7643 -14.6574 3.4739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329028706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:14 Heat of formation + Delta-G solvation = -62.967217 kcal Electronic energy + Delta-G solvation = -26442.422260 eV Core-core repulsion = 22585.534882 eV Total energy + Delta-G solvation = -3856.887378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27440 -40.33481 -38.87162 -37.70313 -36.09947 -35.40750 -33.74797 -32.90519 -32.14627 -30.16894 -28.36500 -28.01272 -26.04702 -25.30331 -23.97542 -22.58974 -21.30104 -20.74470 -20.52662 -20.27175 -18.28344 -18.08469 -17.46144 -17.06514 -16.82057 -16.74305 -16.25107 -16.11946 -15.58007 -15.33807 -15.08293 -14.72267 -14.65853 -14.51940 -14.39204 -14.27492 -13.98513 -13.62614 -13.59286 -13.48758 -13.11523 -13.06936 -13.03568 -12.86245 -12.58599 -12.50508 -12.41013 -11.97404 -11.96448 -11.92300 -11.66991 -11.50837 -10.81851 -10.43862 -10.24569 -10.20021 -9.72548 -9.38550 -9.37648 -8.40761 -6.01756 -0.19358 0.55038 0.97818 1.02108 1.30423 1.36123 1.45112 1.96472 2.13007 2.23613 2.33360 2.78986 3.15665 3.39652 3.61470 3.72595 3.84866 3.94199 4.14143 4.17087 4.21502 4.40229 4.43040 4.47161 4.55953 4.62002 4.64562 4.65210 4.79598 4.83475 4.92923 5.02374 5.04497 5.07336 5.22848 5.29502 5.31746 5.49346 5.51034 5.54274 5.90445 6.03696 6.31254 6.53315 6.60125 6.88720 7.21953 7.40268 7.97215 8.76908 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025670 B = 0.001866 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.499634 B =15004.138756 C =15381.568821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.162 4.162 3 S 0.213 5.787 4 C -0.230 4.230 5 C -0.114 4.114 6 C -0.198 4.198 7 C 0.574 3.426 8 O -0.575 6.575 9 N -0.702 5.702 10 C 0.150 3.850 11 H 0.067 0.933 12 C -0.150 4.150 13 C 0.083 3.917 14 H 0.064 0.936 15 C -0.144 4.144 16 N -0.672 5.672 17 C 0.063 3.937 18 C 0.448 3.552 19 O -0.613 6.613 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.229 1.229 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.199 0.801 33 H 0.171 0.829 34 H 0.413 0.587 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.343 0.657 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 36.208 -1.758 37.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.283 4.283 3 S 0.479 5.521 4 C -0.365 4.365 5 C -0.142 4.142 6 C -0.215 4.215 7 C 0.362 3.638 8 O -0.457 6.457 9 N -0.356 5.356 10 C 0.045 3.955 11 H 0.085 0.915 12 C -0.208 4.208 13 C -0.027 4.027 14 H 0.081 0.919 15 C -0.201 4.201 16 N -0.306 5.306 17 C -0.070 4.070 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.152 1.152 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.216 0.784 33 H 0.188 0.812 34 H 0.252 0.748 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.163 0.837 42 H 0.136 0.864 43 H 0.094 0.906 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.454 37.055 -2.764 38.108 hybrid contribution 0.244 -2.099 1.344 2.505 sum 8.698 34.956 -1.421 36.050 Atomic orbital electron populations 1.20586 0.87185 1.04105 1.03481 1.24802 1.02307 0.98323 1.02865 1.83000 0.94600 1.05661 1.68874 1.25822 1.03420 0.96872 1.10342 1.21379 0.93458 0.97581 1.01774 1.20231 0.94359 0.92573 1.14319 1.17967 0.85790 0.84785 0.75267 1.90734 1.16202 1.86682 1.52047 1.45816 1.10581 1.04514 1.74699 1.20851 0.96311 0.80925 0.97450 0.91507 1.22031 1.01901 1.01141 0.95751 1.21755 0.95449 0.86300 0.99166 0.91850 1.21913 0.94918 1.02219 1.01080 1.60213 1.12843 1.08075 1.49475 1.21694 1.01639 0.88612 0.95028 1.20988 0.84397 0.88097 0.82892 1.90552 1.38573 1.83646 1.37002 1.42024 1.42158 1.08326 1.30773 1.19001 1.25199 0.85445 1.16124 0.92770 1.26148 1.00235 0.94231 1.00959 1.69807 1.45398 1.02731 1.39623 0.85347 0.78382 0.79678 0.77995 1.18256 1.20071 1.15218 0.90317 0.89683 0.90252 0.78433 0.81161 0.74795 0.91016 0.91777 0.94044 0.90094 0.92109 0.91816 0.83730 0.86445 0.90558 0.77448 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 9.60 71.23 0.68 -0.97 16 2 C -0.16 -2.73 6.34 25.17 0.16 -2.57 16 3 S 0.21 2.15 22.97 -56.49 -1.30 0.86 16 4 C -0.23 -1.85 11.12 66.64 0.74 -1.11 16 5 C -0.11 -1.22 9.91 22.67 0.22 -0.99 16 6 C -0.20 -3.50 5.98 -19.87 -0.12 -3.62 16 7 C 0.57 12.93 7.76 86.59 0.67 13.60 16 8 O -0.58 -17.31 13.72 -4.16 -0.06 -17.37 16 9 N -0.70 -12.26 4.97 -446.03 -2.22 -14.47 16 10 C 0.15 3.21 2.30 44.99 0.10 3.31 16 11 H 0.07 1.74 7.58 -2.39 -0.02 1.73 16 12 C -0.15 -3.55 9.02 71.98 0.65 -2.90 16 13 C 0.08 1.62 2.66 44.91 0.12 1.74 16 14 H 0.06 1.09 7.80 -2.39 -0.02 1.08 16 15 C -0.14 -2.20 8.93 71.98 0.64 -1.56 16 16 N -0.67 -18.85 5.14 -495.59 -2.55 -21.40 16 17 C 0.06 1.83 5.96 85.56 0.51 2.34 16 18 C 0.45 20.03 7.82 87.66 0.69 20.72 16 19 O -0.61 -34.01 15.78 -3.05 -0.05 -34.05 16 20 N -0.59 -27.68 5.09 -306.99 -1.56 -29.24 16 21 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 22 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 23 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 24 N -0.93 -56.64 13.96 21.66 0.30 -56.34 16 25 Si 0.97 38.57 27.74 68.60 1.90 40.48 16 26 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 27 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 28 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.82 5.94 -2.39 -0.01 1.81 16 32 H 0.20 0.38 8.06 -2.91 -0.02 0.35 16 33 H 0.17 0.85 7.10 -2.91 -0.02 0.83 16 34 H 0.41 4.56 5.12 -92.71 -0.47 4.08 16 35 H 0.07 1.50 6.56 -2.39 -0.02 1.49 16 36 H 0.06 1.75 7.17 -2.39 -0.02 1.74 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.71 6.29 -2.39 -0.02 0.69 16 39 H 0.06 1.09 6.56 -2.39 -0.02 1.08 16 40 H 0.06 0.99 7.45 -2.38 -0.02 0.97 16 41 H 0.34 10.83 7.62 -89.70 -0.68 10.14 16 42 H 0.12 2.82 7.44 -2.38 -0.02 2.80 16 43 H 0.08 1.83 8.06 -2.39 -0.02 1.81 16 44 H 0.39 14.97 5.76 -92.70 -0.53 14.43 16 45 H 0.28 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -82.08 377.77 0.18 -81.90 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: -0.69 Total: 40.59 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.39 Total: 9.05 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -6.02 Total: -121.45 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.11 Total: -51.43 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.48 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -1.30 Total: 0.86 kcal Total: -82.08 0.18 -81.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329028706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.933 kcal (2) G-P(sol) polarization free energy of solvation -82.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds