Wall clock time and date at job start Tue Mar 31 2020 23:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70443 * 124.59222 * 2 1 4 4 C 1.75508 * 92.44655 * 180.02562 * 3 2 1 5 5 C 1.32768 * 110.57508 * 359.71538 * 4 3 2 6 6 C 1.36015 * 124.59144 * 180.02562 * 2 1 3 7 7 C 1.47185 * 123.46053 * 359.97438 * 6 2 1 8 8 O 1.21643 * 119.99998 * 0.02562 * 7 6 2 9 9 N 1.34773 * 120.00084 * 180.27472 * 7 6 2 10 10 C 1.46500 * 120.00431 * 179.72617 * 9 7 6 11 11 H 1.09008 * 109.46846 * 325.00097 * 10 9 7 12 12 C 1.52996 * 109.47098 * 85.00044 * 10 9 7 13 13 C 1.52998 * 109.47391 * 205.00423 * 10 9 7 14 14 H 1.08994 * 109.47018 * 299.99728 * 13 10 9 15 15 C 1.53005 * 109.47340 * 59.99883 * 13 10 9 16 16 N 1.46900 * 109.47170 * 179.97438 * 13 10 9 17 17 C 1.46900 * 111.00341 * 154.99889 * 16 13 10 18 18 C 1.50698 * 109.47474 * 180.02562 * 17 16 13 19 19 O 1.21290 * 119.99955 * 359.97438 * 18 17 16 20 20 N 1.34770 * 120.00070 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00228 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99549 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00297 * 179.97438 * 21 20 18 24 24 N 1.31419 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00200 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46942 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46920 * 120.00191 * 25 23 21 28 28 H 1.48495 * 109.47228 * 240.00374 * 25 23 21 29 29 H 1.08994 * 109.47203 * 269.97714 * 1 2 3 30 30 H 1.09001 * 109.47163 * 29.98312 * 1 2 3 31 31 H 1.09007 * 109.47090 * 149.97748 * 1 2 3 32 32 H 1.08003 * 124.71195 * 179.97438 * 4 3 2 33 33 H 1.08001 * 123.46195 * 180.24453 * 5 4 3 34 34 H 0.97000 * 120.00112 * 359.73054 * 9 7 6 35 35 H 1.09003 * 109.47061 * 180.02562 * 12 10 9 36 36 H 1.09004 * 109.47132 * 299.99933 * 12 10 9 37 37 H 1.08994 * 109.47099 * 60.00402 * 12 10 9 38 38 H 1.08998 * 109.47131 * 180.02562 * 15 13 10 39 39 H 1.08998 * 109.46895 * 300.00454 * 15 13 10 40 40 H 1.09002 * 109.46899 * 59.99933 * 15 13 10 41 41 H 1.00903 * 111.00238 * 31.04614 * 16 13 10 42 42 H 1.09003 * 109.47130 * 300.00396 * 17 16 13 43 43 H 1.09000 * 109.46821 * 59.99772 * 17 16 13 44 44 H 0.97000 * 120.00404 * 359.97438 * 20 18 17 45 45 H 0.96990 * 119.99880 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4031 0.0000 4 6 3.9607 0.4693 -0.0008 5 6 3.6944 -0.8314 0.0052 6 6 2.2792 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0006 8 8 0.5246 -2.6553 -0.0006 9 7 2.5597 -3.5462 0.0045 10 6 2.0122 -4.9050 0.0105 11 1 1.0954 -4.9247 0.5998 12 6 1.7055 -5.3376 -1.4246 13 6 3.0340 -5.8639 0.6249 14 1 3.9507 -5.8442 0.0357 15 6 3.3407 -5.4313 2.0601 16 7 2.4847 -7.2263 0.6315 17 6 3.5597 -8.2274 0.6364 18 6 2.9592 -9.6095 0.6424 19 8 1.7541 -9.7471 0.6430 20 7 3.7611 -10.6927 0.6482 21 6 3.2147 -11.9501 0.6542 22 1 2.1417 -12.0726 0.6539 23 6 4.0414 -13.0669 0.6595 24 7 5.3471 -12.9178 0.6594 25 14 3.2970 -14.7800 0.6684 26 1 1.8156 -14.6760 0.6678 27 1 3.7415 -15.5191 -0.5404 28 1 3.7421 -15.5068 1.8845 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 4.9538 0.8937 -0.0014 33 1 4.4576 -1.5955 0.0097 34 1 3.5202 -3.4103 0.0043 35 1 1.2977 -6.3484 -1.4201 36 1 0.9775 -4.6545 -1.8623 37 1 2.6223 -5.3179 -2.0138 38 1 4.0689 -6.1141 2.4976 39 1 3.7480 -4.4203 2.0557 40 1 2.4238 -5.4510 2.6493 41 1 1.8616 -7.3688 -0.1493 42 1 4.1759 -8.1032 -0.2541 43 1 4.1757 -8.0946 1.5258 44 1 4.7248 -10.5827 0.6481 45 1 5.9242 -13.6973 0.6635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329028708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:21 Heat of formation + Delta-G solvation = -69.783080 kcal Electronic energy + Delta-G solvation = -26377.056940 eV Core-core repulsion = 22519.874004 eV Total energy + Delta-G solvation = -3857.182936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24765 -40.21333 -38.80270 -37.68249 -36.05668 -35.38431 -33.28446 -32.87006 -31.95898 -30.84722 -28.30496 -27.82453 -25.92185 -25.20859 -23.80358 -22.48786 -21.49178 -21.09035 -20.36290 -19.92496 -18.28328 -18.12841 -17.50141 -17.12304 -16.89339 -16.42038 -16.19965 -16.00933 -15.58855 -15.42951 -15.02847 -14.77090 -14.53206 -14.48002 -14.36655 -14.10497 -14.03489 -13.59261 -13.53346 -13.48010 -13.13037 -13.03661 -12.90531 -12.68860 -12.60107 -12.54187 -12.40414 -12.32603 -12.11761 -11.95878 -11.62465 -11.51265 -10.81260 -10.34218 -10.21208 -10.01138 -9.71834 -9.38616 -9.34744 -8.46883 -5.95246 -0.18491 0.55721 0.98424 1.03102 1.36462 1.41989 1.56014 2.05198 2.11978 2.30857 2.34906 2.99008 3.20554 3.50584 3.56330 3.73430 3.86166 3.95655 4.16559 4.18202 4.31107 4.39490 4.44579 4.46561 4.55669 4.59975 4.63666 4.65696 4.70975 4.85017 4.90738 4.99178 5.02263 5.07802 5.18427 5.24251 5.32562 5.38566 5.41699 5.46329 5.89921 6.10697 6.37260 6.54434 6.60492 7.13101 7.23357 7.56584 8.12257 8.70673 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034831 B = 0.001754 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.692255 B =15959.406104 C =16424.851530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.162 4.162 3 S 0.212 5.788 4 C -0.231 4.231 5 C -0.113 4.113 6 C -0.197 4.197 7 C 0.576 3.424 8 O -0.574 6.574 9 N -0.700 5.700 10 C 0.151 3.849 11 H 0.070 0.930 12 C -0.164 4.164 13 C 0.084 3.916 14 H 0.073 0.927 15 C -0.137 4.137 16 N -0.679 5.679 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.198 0.802 33 H 0.171 0.829 34 H 0.413 0.587 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.346 0.654 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 31.141 -2.674 31.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.283 4.283 3 S 0.478 5.522 4 C -0.365 4.365 5 C -0.141 4.141 6 C -0.214 4.214 7 C 0.364 3.636 8 O -0.456 6.456 9 N -0.353 5.353 10 C 0.045 3.955 11 H 0.089 0.911 12 C -0.223 4.223 13 C -0.026 4.026 14 H 0.091 0.909 15 C -0.195 4.195 16 N -0.315 5.315 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.196 1.196 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.215 0.785 33 H 0.188 0.812 34 H 0.251 0.749 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.168 0.832 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.696 32.299 -1.996 32.405 hybrid contribution 0.958 -2.639 -0.809 2.922 sum 2.655 29.660 -2.805 29.911 Atomic orbital electron populations 1.20587 0.87169 1.04110 1.03478 1.24801 1.02306 0.98301 1.02863 1.82989 0.94594 1.05682 1.68917 1.25815 1.03399 0.96897 1.10422 1.21383 0.93483 0.97565 1.01692 1.20220 0.94324 0.92552 1.14289 1.17920 0.85748 0.84681 0.75247 1.90737 1.16191 1.86647 1.52006 1.45637 1.10493 1.04452 1.74671 1.20813 0.97094 0.81045 0.96507 0.91143 1.22193 1.02536 1.01400 0.96157 1.21756 0.96131 0.86889 0.97776 0.90949 1.21806 1.01475 1.01362 0.94868 1.60164 1.18289 1.01079 1.52006 1.21583 0.93523 0.88067 1.03353 1.20907 0.87149 0.87339 0.82178 1.90502 1.16583 1.87392 1.56622 1.41918 1.09093 1.04907 1.65051 1.19691 0.93474 0.83284 1.49818 0.90461 1.26019 0.95605 1.03302 0.96328 1.69670 1.03262 1.32684 1.50387 0.84883 0.78083 0.77102 0.78343 1.19964 1.19529 1.19611 0.90351 0.89664 0.90224 0.78509 0.81163 0.74902 0.91862 0.92786 0.90758 0.92241 0.90329 0.93827 0.83222 0.91012 0.87605 0.76879 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.60 71.24 0.68 -1.01 16 2 C -0.16 -2.81 6.34 25.17 0.16 -2.65 16 3 S 0.21 2.27 22.97 -56.49 -1.30 0.97 16 4 C -0.23 -2.02 11.12 66.64 0.74 -1.28 16 5 C -0.11 -1.28 9.91 22.67 0.22 -1.06 16 6 C -0.20 -3.59 5.98 -19.87 -0.12 -3.71 16 7 C 0.58 13.32 7.75 86.59 0.67 13.99 16 8 O -0.57 -17.69 13.72 -4.17 -0.06 -17.75 16 9 N -0.70 -12.75 4.36 -446.02 -1.95 -14.70 16 10 C 0.15 3.43 2.29 44.99 0.10 3.53 16 11 H 0.07 2.07 7.58 -2.38 -0.02 2.05 16 12 C -0.16 -3.72 9.25 71.98 0.67 -3.06 16 13 C 0.08 1.86 2.28 44.92 0.10 1.96 16 14 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 15 C -0.14 -2.86 9.26 71.98 0.67 -2.20 16 16 N -0.68 -21.17 5.93 -495.58 -2.94 -24.11 16 17 C 0.07 2.22 5.97 85.56 0.51 2.73 16 18 C 0.44 20.73 7.82 87.66 0.69 21.41 16 19 O -0.62 -35.02 15.78 -3.06 -0.05 -35.07 16 20 N -0.57 -29.23 5.29 -307.00 -1.62 -30.85 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 24 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 25 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.86 5.94 -2.38 -0.01 1.84 16 32 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.17 0.99 7.10 -2.91 -0.02 0.96 16 34 H 0.41 4.80 6.93 -92.71 -0.64 4.16 16 35 H 0.06 1.58 6.21 -2.39 -0.01 1.56 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.25 7.45 -2.39 -0.02 1.23 16 39 H 0.08 1.21 7.45 -2.39 -0.02 1.19 16 40 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.35 11.51 5.87 -89.69 -0.53 10.98 16 42 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 43 H 0.11 3.14 7.44 -2.39 -0.02 3.12 16 44 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 45 H 0.28 13.89 8.31 -92.72 -0.77 13.12 16 Total: -1.00 -74.28 384.66 -0.08 -74.35 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -0.85 Total: 40.74 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.38 Total: 10.29 kcal Atomic # 7 Polarization: -112.44 SS G_CDS: -6.23 Total: -118.66 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.11 Total: -52.82 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.30 Total: 0.97 kcal Total: -74.28 -0.08 -74.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329028708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.572 kcal (2) G-P(sol) polarization free energy of solvation -74.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds