Wall clock time and date at job start Tue Mar 31 2020 23:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70453 * 124.59154 * 2 1 4 4 C 1.75502 * 92.44582 * 180.02562 * 3 2 1 5 5 C 1.32772 * 110.57651 * 359.71430 * 4 3 2 6 6 C 1.36010 * 124.59703 * 180.02562 * 2 1 3 7 7 C 1.47191 * 123.45812 * 359.97438 * 6 2 1 8 8 O 1.21644 * 119.99962 * 0.27429 * 7 6 2 9 9 N 1.34774 * 120.00047 * 180.02562 * 7 6 2 10 10 C 1.46509 * 119.99853 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46919 * 175.19015 * 10 9 7 12 12 H 1.09006 * 109.46585 * 295.31169 * 11 10 9 13 13 C 1.52996 * 109.46818 * 175.31429 * 11 10 9 14 14 N 1.46901 * 109.47105 * 55.30992 * 11 10 9 15 15 C 1.46905 * 110.99539 * 192.49205 * 14 11 10 16 16 C 1.46897 * 110.99702 * 68.54661 * 14 11 10 17 17 C 1.50707 * 109.46918 * 189.99656 * 16 14 11 18 18 O 1.21285 * 119.99895 * 359.97438 * 17 16 14 19 19 N 1.34778 * 119.99725 * 179.97438 * 17 16 14 20 20 C 1.37095 * 119.99203 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00678 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99484 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00055 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99926 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47351 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47103 * 120.00130 * 24 22 20 27 27 H 1.48503 * 109.47178 * 239.99800 * 24 22 20 28 28 H 1.09001 * 109.47440 * 269.97328 * 1 2 3 29 29 H 1.09000 * 109.47346 * 29.98088 * 1 2 3 30 30 H 1.09008 * 109.46739 * 149.97999 * 1 2 3 31 31 H 1.08005 * 124.71000 * 179.97438 * 4 3 2 32 32 H 1.08001 * 123.45857 * 180.28615 * 5 4 3 33 33 H 0.96996 * 119.99997 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47003 * 295.18386 * 10 9 7 35 35 H 1.08991 * 109.47494 * 55.18531 * 10 9 7 36 36 H 1.08999 * 109.47352 * 59.99993 * 13 11 10 37 37 H 1.09008 * 109.46683 * 179.97438 * 13 11 10 38 38 H 1.08997 * 109.47531 * 299.99496 * 13 11 10 39 39 H 1.09002 * 109.47001 * 53.76797 * 15 14 11 40 40 H 1.08996 * 109.46734 * 173.76101 * 15 14 11 41 41 H 1.08992 * 109.47315 * 293.76502 * 15 14 11 42 42 H 1.08999 * 109.47315 * 309.99252 * 16 14 11 43 43 H 1.09000 * 109.47718 * 69.99445 * 16 14 11 44 44 H 0.96998 * 120.00244 * 359.97438 * 19 17 16 45 45 H 0.97006 * 120.00029 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9606 0.4694 -0.0008 5 6 3.6944 -0.8313 0.0052 6 6 2.2792 -1.1196 -0.0005 7 6 1.7292 -2.4848 -0.0006 8 8 0.5247 -2.6553 -0.0052 9 7 2.5599 -3.5461 -0.0006 10 6 2.0124 -4.9050 -0.0012 11 6 3.1551 -5.9152 -0.1220 12 1 3.6447 -5.7959 -1.0886 13 6 2.5956 -7.3344 -0.0053 14 7 4.1295 -5.6831 0.9525 15 6 5.3735 -6.4241 0.7042 16 6 3.5620 -6.0311 2.2620 17 6 4.4867 -5.5551 3.3527 18 8 5.5172 -4.9828 3.0673 19 7 4.1684 -5.7655 4.6454 20 6 5.0099 -5.3329 5.6375 21 1 5.9275 -4.8233 5.3834 22 6 4.6815 -5.5493 6.9702 23 7 3.5647 -6.1690 7.2795 24 14 5.8283 -4.9606 8.3221 25 1 7.0102 -4.2976 7.7149 26 1 5.1121 -3.9940 9.1928 27 1 6.2741 -6.1217 9.1336 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 4.9538 0.8939 -0.0014 32 1 4.4577 -1.5954 0.0104 33 1 3.5203 -3.4102 -0.0009 34 1 1.4706 -5.0788 0.9285 35 1 1.3327 -5.0225 -0.8451 36 1 1.8726 -7.5066 -0.8027 37 1 3.4097 -8.0541 -0.0919 38 1 2.1059 -7.4537 0.9611 39 1 5.7508 -6.1782 -0.2885 40 1 6.1158 -6.1491 1.4534 41 1 5.1767 -7.4945 0.7632 42 1 2.5895 -5.5521 2.3754 43 1 3.4447 -7.1126 2.3314 44 1 3.3441 -6.2229 4.8737 45 1 3.3357 -6.3204 8.2099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329430315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:22 Heat of formation + Delta-G solvation = -35.209250 kcal Electronic energy + Delta-G solvation = -27438.465798 eV Core-core repulsion = 23582.782095 eV Total energy + Delta-G solvation = -3855.683702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.00379 -38.96683 -37.38443 -36.73353 -34.38531 -33.81043 -31.94224 -31.24690 -30.97540 -28.12916 -27.74607 -26.07077 -24.94386 -24.01629 -23.09778 -21.50490 -20.43618 -19.25434 -18.81181 -17.80057 -17.31263 -16.76257 -16.58866 -15.75375 -15.40651 -14.89184 -14.79517 -14.77805 -14.18815 -14.08882 -13.72563 -13.65141 -13.54040 -13.41979 -13.35308 -12.74119 -12.70119 -12.61589 -12.26938 -12.14606 -12.03458 -11.79768 -11.65401 -11.48162 -11.25091 -11.15828 -11.12996 -10.89064 -10.77332 -10.34616 -10.22400 -9.66733 -9.48569 -8.99853 -8.80910 -8.50510 -8.45528 -7.98594 -7.87097 -6.41451 -3.82198 0.75515 1.41713 1.81739 1.98364 3.16036 3.26618 3.33127 3.37204 3.47980 3.90425 3.98697 4.24025 4.61359 4.69811 4.84876 4.96693 5.08820 5.11096 5.21296 5.26153 5.27119 5.47218 5.49688 5.50213 5.58460 5.59694 5.75637 5.78939 5.86862 5.87811 5.94074 5.94598 6.01388 6.13271 6.18694 6.21269 6.27939 6.50621 6.60984 7.21048 7.32000 7.55394 7.71600 8.06603 8.37292 8.61837 9.18419 9.54958 10.06392 10.76360 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.003333 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.967183 B = 8399.739938 C =10164.306352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.140 4.140 3 S 0.164 5.836 4 C -0.235 4.235 5 C -0.099 4.099 6 C -0.172 4.172 7 C 0.579 3.421 8 O -0.548 6.548 9 N -0.706 5.706 10 C 0.130 3.870 11 C 0.064 3.936 12 H 0.088 0.912 13 C -0.185 4.185 14 N -0.512 5.512 15 C 0.021 3.979 16 C 0.041 3.959 17 C 0.445 3.555 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.168 0.832 32 H 0.152 0.848 33 H 0.411 0.589 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.018 0.982 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.391 0.609 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 7.008 -17.488 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.261 4.261 3 S 0.429 5.571 4 C -0.369 4.369 5 C -0.128 4.128 6 C -0.189 4.189 7 C 0.365 3.635 8 O -0.429 6.429 9 N -0.358 5.358 10 C 0.006 3.994 11 C -0.045 4.045 12 H 0.106 0.894 13 C -0.244 4.244 14 N -0.235 5.235 15 C -0.126 4.126 16 C -0.090 4.090 17 C 0.230 3.770 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.122 0.878 31 H 0.186 0.814 32 H 0.169 0.831 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.116 0.884 41 H 0.036 0.964 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.224 0.776 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.216 9.249 -17.482 20.222 hybrid contribution 0.683 -2.475 1.059 2.777 sum -3.534 6.774 -16.423 18.114 Atomic orbital electron populations 1.20629 0.86851 1.04123 1.03637 1.24503 1.01723 0.96784 1.03051 1.82975 0.95427 1.07773 1.70877 1.25372 1.02092 0.97178 1.12306 1.21308 0.94674 0.96535 1.00248 1.20155 0.92788 0.93734 1.12228 1.17536 0.86003 0.83813 0.76151 1.90703 1.14542 1.86245 1.51381 1.45673 1.10831 1.05094 1.74164 1.21398 0.95154 0.80650 1.02216 1.22055 0.93001 0.93335 0.96154 0.89367 1.22401 1.01825 0.97221 1.02967 1.61797 1.04141 1.57302 1.00295 1.22554 0.92904 0.94540 1.02649 1.21940 0.98645 0.99010 0.89379 1.19721 0.88356 0.85497 0.83376 1.90463 1.27190 1.46326 1.82367 1.41871 1.22293 1.51729 1.04177 1.19730 1.03618 1.34525 0.84880 0.87889 1.25254 0.97029 0.97197 0.98445 1.69621 1.23236 1.41929 1.19465 0.85823 0.79976 0.78331 0.80346 1.19238 1.20754 1.20781 0.90231 0.91795 0.87757 0.81424 0.83061 0.75246 0.91482 0.90994 0.91885 0.91892 0.91618 0.92357 0.88411 0.96371 0.89464 0.93078 0.77559 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.60 36.00 0.35 -0.72 16 2 C -0.14 -1.75 6.34 -35.11 -0.22 -1.97 16 3 S 0.16 1.64 22.97 -107.50 -2.47 -0.82 16 4 C -0.23 -2.45 11.12 28.86 0.32 -2.13 16 5 C -0.10 -1.19 9.91 -39.02 -0.39 -1.57 16 6 C -0.17 -2.37 5.98 -104.63 -0.63 -2.99 16 7 C 0.58 8.77 7.79 -12.63 -0.10 8.67 16 8 O -0.55 -9.45 14.05 5.24 0.07 -9.37 16 9 N -0.71 -9.58 5.39 -61.45 -0.33 -9.91 16 10 C 0.13 1.63 4.94 -4.03 -0.02 1.61 16 11 C 0.06 0.73 2.47 -67.71 -0.17 0.57 16 12 H 0.09 0.90 7.93 -51.93 -0.41 0.49 16 13 C -0.18 -1.89 8.41 37.16 0.31 -1.58 16 14 N -0.51 -7.59 3.82 -236.32 -0.90 -8.49 16 15 C 0.02 0.31 8.90 60.07 0.53 0.84 16 16 C 0.04 0.71 4.31 -4.97 -0.02 0.69 16 17 C 0.45 10.21 7.52 -10.98 -0.08 10.13 16 18 O -0.58 -14.89 13.88 5.55 0.08 -14.82 16 19 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.36 5.93 -51.92 -0.31 1.05 16 31 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.15 1.67 7.10 -52.49 -0.37 1.30 16 33 H 0.41 5.38 6.62 -40.82 -0.27 5.11 16 34 H 0.07 0.94 6.65 -51.93 -0.35 0.59 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.64 6.92 -51.92 -0.36 0.28 16 38 H 0.06 0.72 6.54 -51.93 -0.34 0.38 16 39 H 0.06 0.71 7.98 -51.93 -0.41 0.30 16 40 H 0.10 1.79 5.92 -51.93 -0.31 1.48 16 41 H 0.02 0.24 6.96 -51.93 -0.36 -0.12 16 42 H 0.09 1.46 6.30 -51.93 -0.33 1.14 16 43 H 0.05 0.82 6.81 -51.93 -0.35 0.46 16 44 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -31.92 377.47 -8.69 -40.61 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -6.12 Total: 15.57 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.35 Total: 3.65 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.57 Total: -56.54 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.15 Total: -24.19 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.47 Total: -0.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.92 -8.69 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329430315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.404 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds