Wall clock time and date at job start Tue Mar 31 2020 23:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70453 * 124.59154 * 2 1 4 4 C 1.75502 * 92.44582 * 180.02562 * 3 2 1 5 5 C 1.32772 * 110.57651 * 359.71430 * 4 3 2 6 6 C 1.36010 * 124.59703 * 180.02562 * 2 1 3 7 7 C 1.47191 * 123.45812 * 359.97438 * 6 2 1 8 8 O 1.21644 * 119.99962 * 0.27429 * 7 6 2 9 9 N 1.34774 * 120.00047 * 180.02562 * 7 6 2 10 10 C 1.46509 * 119.99853 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46919 * 175.19015 * 10 9 7 12 12 H 1.09006 * 109.46585 * 295.31169 * 11 10 9 13 13 C 1.52996 * 109.46818 * 175.31429 * 11 10 9 14 14 N 1.46901 * 109.47105 * 55.30992 * 11 10 9 15 15 C 1.46905 * 110.99539 * 192.49205 * 14 11 10 16 16 C 1.46897 * 110.99702 * 68.54661 * 14 11 10 17 17 C 1.50707 * 109.46918 * 189.99656 * 16 14 11 18 18 O 1.21285 * 119.99895 * 359.97438 * 17 16 14 19 19 N 1.34778 * 119.99725 * 179.97438 * 17 16 14 20 20 C 1.37095 * 119.99203 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00678 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99484 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00055 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99926 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47351 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47103 * 120.00130 * 24 22 20 27 27 H 1.48503 * 109.47178 * 239.99800 * 24 22 20 28 28 H 1.09001 * 109.47440 * 269.97328 * 1 2 3 29 29 H 1.09000 * 109.47346 * 29.98088 * 1 2 3 30 30 H 1.09008 * 109.46739 * 149.97999 * 1 2 3 31 31 H 1.08005 * 124.71000 * 179.97438 * 4 3 2 32 32 H 1.08001 * 123.45857 * 180.28615 * 5 4 3 33 33 H 0.96996 * 119.99997 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47003 * 295.18386 * 10 9 7 35 35 H 1.08991 * 109.47494 * 55.18531 * 10 9 7 36 36 H 1.08999 * 109.47352 * 59.99993 * 13 11 10 37 37 H 1.09008 * 109.46683 * 179.97438 * 13 11 10 38 38 H 1.08997 * 109.47531 * 299.99496 * 13 11 10 39 39 H 1.09002 * 109.47001 * 53.76797 * 15 14 11 40 40 H 1.08996 * 109.46734 * 173.76101 * 15 14 11 41 41 H 1.08992 * 109.47315 * 293.76502 * 15 14 11 42 42 H 1.08999 * 109.47315 * 309.99252 * 16 14 11 43 43 H 1.09000 * 109.47718 * 69.99445 * 16 14 11 44 44 H 0.96998 * 120.00244 * 359.97438 * 19 17 16 45 45 H 0.97006 * 120.00029 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9606 0.4694 -0.0008 5 6 3.6944 -0.8313 0.0052 6 6 2.2792 -1.1196 -0.0005 7 6 1.7292 -2.4848 -0.0006 8 8 0.5247 -2.6553 -0.0052 9 7 2.5599 -3.5461 -0.0006 10 6 2.0124 -4.9050 -0.0012 11 6 3.1551 -5.9152 -0.1220 12 1 3.6447 -5.7959 -1.0886 13 6 2.5956 -7.3344 -0.0053 14 7 4.1295 -5.6831 0.9525 15 6 5.3735 -6.4241 0.7042 16 6 3.5620 -6.0311 2.2620 17 6 4.4867 -5.5551 3.3527 18 8 5.5172 -4.9828 3.0673 19 7 4.1684 -5.7655 4.6454 20 6 5.0099 -5.3329 5.6375 21 1 5.9275 -4.8233 5.3834 22 6 4.6815 -5.5493 6.9702 23 7 3.5647 -6.1690 7.2795 24 14 5.8283 -4.9606 8.3221 25 1 7.0102 -4.2976 7.7149 26 1 5.1121 -3.9940 9.1928 27 1 6.2741 -6.1217 9.1336 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 4.9538 0.8939 -0.0014 32 1 4.4577 -1.5954 0.0104 33 1 3.5203 -3.4102 -0.0009 34 1 1.4706 -5.0788 0.9285 35 1 1.3327 -5.0225 -0.8451 36 1 1.8726 -7.5066 -0.8027 37 1 3.4097 -8.0541 -0.0919 38 1 2.1059 -7.4537 0.9611 39 1 5.7508 -6.1782 -0.2885 40 1 6.1158 -6.1491 1.4534 41 1 5.1767 -7.4945 0.7632 42 1 2.5895 -5.5521 2.3754 43 1 3.4447 -7.1126 2.3314 44 1 3.3441 -6.2229 4.8737 45 1 3.3357 -6.3204 8.2099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329430315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:22 Heat of formation + Delta-G solvation = -57.875855 kcal Electronic energy + Delta-G solvation = -27439.448695 eV Core-core repulsion = 23582.782095 eV Total energy + Delta-G solvation = -3856.666600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12868 -40.43541 -38.82472 -37.77748 -35.98733 -35.34817 -33.26188 -32.84857 -32.05468 -29.57627 -28.72929 -27.07401 -26.64320 -25.30863 -24.09084 -22.49345 -21.82063 -20.60162 -20.14706 -19.67200 -18.21968 -18.15747 -17.69265 -16.85788 -16.81570 -16.50362 -16.10150 -16.06478 -15.68198 -15.54134 -15.02203 -14.93532 -14.66301 -14.44503 -14.29821 -13.97914 -13.90661 -13.62783 -13.56652 -13.45271 -13.08562 -13.02012 -12.99065 -12.81851 -12.54968 -12.44812 -12.38659 -12.15620 -12.11798 -11.99255 -11.77876 -11.44328 -10.78696 -10.26272 -10.08090 -9.98637 -9.70838 -9.34776 -9.17770 -8.45659 -5.93972 -0.18389 0.56842 0.94968 1.02790 1.36124 1.41013 1.55064 2.07417 2.26337 2.32710 2.41030 2.81196 3.21491 3.41230 3.74026 3.77320 3.89942 4.03949 4.19871 4.22995 4.30094 4.37251 4.40704 4.51239 4.59387 4.64525 4.65780 4.67230 4.68708 4.77260 4.90377 4.98614 5.01854 5.08028 5.23001 5.26956 5.29217 5.30984 5.41991 5.53915 5.88917 6.07838 6.21630 6.61517 6.62056 7.14463 7.26260 7.58296 8.13692 8.72186 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.003333 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.967183 B = 8399.739938 C =10164.306352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.161 4.161 3 S 0.221 5.779 4 C -0.235 4.235 5 C -0.116 4.116 6 C -0.199 4.199 7 C 0.571 3.429 8 O -0.578 6.578 9 N -0.702 5.702 10 C 0.130 3.870 11 C 0.073 3.927 12 H 0.111 0.889 13 C -0.181 4.181 14 N -0.523 5.523 15 C 0.027 3.973 16 C 0.058 3.942 17 C 0.444 3.556 18 O -0.608 6.608 19 N -0.578 5.578 20 C -0.328 4.328 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.271 1.271 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.194 0.806 32 H 0.155 0.845 33 H 0.413 0.587 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.030 0.970 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.393 0.607 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 7.565 -18.473 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.282 4.282 3 S 0.486 5.514 4 C -0.369 4.369 5 C -0.145 4.145 6 C -0.216 4.216 7 C 0.358 3.642 8 O -0.461 6.461 9 N -0.353 5.353 10 C 0.005 3.995 11 C -0.035 4.035 12 H 0.129 0.871 13 C -0.240 4.240 14 N -0.247 5.247 15 C -0.121 4.121 16 C -0.074 4.074 17 C 0.231 3.769 18 O -0.494 6.494 19 N -0.216 5.216 20 C -0.458 4.458 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.565 5.565 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.199 1.199 27 H -0.196 1.196 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.211 0.789 32 H 0.172 0.828 33 H 0.250 0.750 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.226 0.774 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.942 9.789 -18.488 21.288 hybrid contribution 0.602 -2.577 1.272 2.936 sum -3.340 7.212 -17.216 18.962 Atomic orbital electron populations 1.20595 0.86537 1.04447 1.03434 1.24837 1.02563 0.97968 1.02791 1.82742 0.93973 1.05536 1.69114 1.25773 1.03682 0.96866 1.10627 1.21354 0.94011 0.97489 1.01630 1.20260 0.93885 0.93371 1.14127 1.17884 0.85810 0.84776 0.75735 1.90678 1.15640 1.86797 1.52974 1.45707 1.10801 1.05312 1.73485 1.21470 0.95693 0.80458 1.01834 1.22085 0.91950 0.93855 0.95617 0.87115 1.22368 1.02387 0.95972 1.03305 1.61716 1.05074 1.57940 0.99979 1.22439 0.91776 0.95153 1.02739 1.21725 0.97074 0.99762 0.88804 1.20737 0.88464 0.83872 0.83790 1.90446 1.28761 1.47216 1.82938 1.41965 1.22260 1.52553 1.04782 1.19690 1.03818 1.35970 0.86325 0.90139 1.26025 0.98441 0.96931 0.99998 1.69689 1.24245 1.42296 1.20223 0.84895 0.77935 0.78172 0.77501 1.19584 1.19889 1.19609 0.90634 0.89207 0.89726 0.78933 0.82786 0.75008 0.93196 0.89811 0.89755 0.91385 0.92575 0.89593 0.92511 0.95138 0.88944 0.91308 0.77378 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.07 9.60 71.23 0.68 -1.39 16 2 C -0.16 -3.93 6.34 25.17 0.16 -3.77 16 3 S 0.22 3.98 22.97 -56.49 -1.30 2.68 16 4 C -0.23 -4.49 11.12 66.64 0.74 -3.75 16 5 C -0.12 -2.73 9.91 22.67 0.22 -2.51 16 6 C -0.20 -5.49 5.98 -19.87 -0.12 -5.61 16 7 C 0.57 17.61 7.79 86.60 0.67 18.29 16 8 O -0.58 -20.49 14.05 -4.17 -0.06 -20.54 16 9 N -0.70 -18.97 5.39 -466.57 -2.52 -21.48 16 10 C 0.13 3.13 4.94 86.38 0.43 3.56 16 11 C 0.07 1.53 2.47 44.92 0.11 1.64 16 12 H 0.11 1.90 7.93 -2.38 -0.02 1.88 16 13 C -0.18 -3.23 8.41 71.98 0.61 -2.62 16 14 N -0.52 -14.94 3.82 -901.60 -3.45 -18.39 16 15 C 0.03 0.74 8.90 127.69 1.14 1.88 16 16 C 0.06 1.96 4.31 85.56 0.37 2.33 16 17 C 0.44 20.81 7.52 87.66 0.66 21.46 16 18 O -0.61 -32.16 13.88 -3.05 -0.04 -32.20 16 19 N -0.58 -29.88 5.29 -306.98 -1.62 -31.51 16 20 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.60 13.05 21.66 0.28 -50.32 16 24 Si 0.99 43.28 29.55 68.60 2.03 45.30 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 2.27 5.93 -2.38 -0.01 2.25 16 31 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.15 3.38 7.10 -2.91 -0.02 3.35 16 33 H 0.41 10.70 6.62 -92.71 -0.61 10.09 16 34 H 0.05 1.39 6.65 -2.39 -0.02 1.37 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.17 6.92 -2.38 -0.02 1.16 16 38 H 0.06 1.12 6.54 -2.39 -0.02 1.10 16 39 H 0.09 1.90 7.98 -2.39 -0.02 1.88 16 40 H 0.06 2.09 5.92 -2.39 -0.01 2.08 16 41 H 0.03 0.77 6.96 -2.39 -0.02 0.75 16 42 H 0.09 3.09 6.30 -2.39 -0.02 3.08 16 43 H 0.07 2.12 6.81 -2.39 -0.02 2.11 16 44 H 0.39 19.66 7.90 -92.71 -0.73 18.92 16 45 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -70.71 377.47 -0.02 -70.73 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -0.30 Total: 44.40 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.95 Total: 11.31 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -7.30 Total: -121.69 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -0.10 Total: -52.74 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.30 Total: 2.68 kcal Total: -70.71 -0.02 -70.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329430315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.856 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds