Wall clock time and date at job start Tue Mar 31 2020 23:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.70441 * 124.59387 * 2 1 4 4 C 1.75511 * 92.44603 * 180.02562 * 3 2 1 5 5 C 1.32769 * 110.57309 * 359.73328 * 4 3 2 6 6 C 1.36017 * 124.59012 * 180.02562 * 2 1 3 7 7 C 1.47193 * 123.45833 * 359.95372 * 6 2 1 8 8 O 1.21636 * 119.99967 * 359.97438 * 7 6 2 9 9 N 1.34774 * 119.99559 * 179.97438 * 7 6 2 10 10 C 1.46504 * 119.99669 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47051 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46505 * 64.99900 * 11 10 9 13 13 C 1.52997 * 109.47127 * 185.00029 * 11 10 9 14 14 N 1.46894 * 109.47224 * 305.00575 * 11 10 9 15 15 C 1.46902 * 110.99790 * 298.94884 * 14 11 10 16 16 C 1.46896 * 111.00342 * 175.00014 * 14 11 10 17 17 C 1.50695 * 109.47619 * 189.99958 * 16 14 11 18 18 O 1.21286 * 119.99843 * 359.97438 * 17 16 14 19 19 N 1.34776 * 120.00467 * 180.02562 * 17 16 14 20 20 C 1.37089 * 120.00385 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00257 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00040 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99968 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99986 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47170 * 90.00302 * 24 22 20 26 26 H 1.48502 * 109.47482 * 210.00611 * 24 22 20 27 27 H 1.48509 * 109.47017 * 330.00300 * 24 22 20 28 28 H 1.09002 * 109.47563 * 269.96085 * 1 2 3 29 29 H 1.09003 * 109.47156 * 29.96364 * 1 2 3 30 30 H 1.09004 * 109.47063 * 149.95944 * 1 2 3 31 31 H 1.07997 * 124.71105 * 180.02562 * 4 3 2 32 32 H 1.08004 * 123.45423 * 180.24922 * 5 4 3 33 33 H 0.96996 * 120.00429 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.46773 * 60.00404 * 10 9 7 35 35 H 1.09000 * 109.47434 * 300.00313 * 10 9 7 36 36 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 37 37 H 1.09001 * 109.46832 * 60.00321 * 13 11 10 38 38 H 1.09004 * 109.47261 * 300.00303 * 13 11 10 39 39 H 1.09003 * 109.46808 * 60.00632 * 15 14 11 40 40 H 1.09004 * 109.47176 * 180.02562 * 15 14 11 41 41 H 1.08994 * 109.47263 * 300.00333 * 15 14 11 42 42 H 1.09006 * 109.46837 * 310.00141 * 16 14 11 43 43 H 1.09003 * 109.47200 * 69.99229 * 16 14 11 44 44 H 0.97011 * 119.99567 * 359.97438 * 19 17 16 45 45 H 0.96997 * 120.00137 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4031 0.0000 4 6 3.9607 0.4692 -0.0008 5 6 3.6943 -0.8315 0.0048 6 6 2.2791 -1.1197 -0.0005 7 6 1.7289 -2.4850 -0.0001 8 8 0.5245 -2.6552 0.0012 9 7 2.5596 -3.5462 -0.0012 10 6 2.0120 -4.9051 -0.0002 11 6 3.1593 -5.9173 -0.0024 12 1 3.7208 -5.8320 0.9280 13 6 2.5908 -7.3323 -0.1271 14 7 4.0500 -5.6455 -1.1384 15 6 3.3319 -5.7759 -2.4133 16 6 5.2279 -6.5227 -1.1056 17 6 6.2297 -6.0571 -2.1306 18 8 5.9863 -5.0900 -2.8208 19 7 7.3958 -6.7160 -2.2810 20 6 8.3069 -6.2928 -3.2137 21 1 8.0902 -5.4316 -3.8284 22 6 9.5094 -6.9719 -3.3684 23 7 9.7729 -8.0200 -2.6209 24 14 10.7506 -6.3956 -4.6398 25 1 11.6728 -5.4103 -4.0202 26 1 11.5293 -7.5594 -5.1345 27 1 10.0365 -5.7591 -5.7757 28 1 -0.3634 -0.0007 1.0277 29 1 -0.3633 0.8903 -0.5133 30 1 -0.3633 -0.8897 -0.5145 31 1 4.9537 0.8936 -0.0006 32 1 4.4576 -1.5956 0.0093 33 1 3.5200 -3.4104 -0.0026 34 1 1.3984 -5.0500 -0.8893 35 1 1.4008 -5.0499 0.8906 36 1 3.4082 -8.0534 -0.1282 37 1 2.0294 -7.4175 -1.0575 38 1 1.9299 -7.5340 0.7159 39 1 2.5057 -5.0654 -2.4392 40 1 4.0147 -5.5699 -3.2377 41 1 2.9427 -6.7894 -2.5091 42 1 5.6794 -6.4877 -0.1141 43 1 4.9256 -7.5454 -1.3313 44 1 7.5903 -7.4898 -1.7291 45 1 10.6121 -8.4942 -2.7290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329430316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:27 Heat of formation + Delta-G solvation = -34.727246 kcal Electronic energy + Delta-G solvation = -27092.755077 eV Core-core repulsion = 23237.092276 eV Total energy + Delta-G solvation = -3855.662801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.06893 -38.97280 -37.48750 -36.78585 -34.41522 -33.83605 -32.00271 -31.29758 -30.96197 -28.08514 -27.70340 -26.00979 -25.36540 -23.98333 -23.17793 -21.56183 -20.11213 -19.19594 -19.05376 -17.85641 -17.36566 -16.83755 -16.45746 -15.82924 -15.61826 -15.00620 -14.85071 -14.76699 -14.37991 -14.10413 -13.83972 -13.59910 -13.54824 -13.42828 -13.13372 -13.00994 -12.75811 -12.71233 -12.29732 -12.19161 -11.83180 -11.78118 -11.70593 -11.46931 -11.23066 -11.22310 -11.18073 -10.93736 -10.74776 -10.41663 -10.24184 -9.74190 -9.49758 -9.06738 -8.86846 -8.54177 -8.49190 -8.00542 -7.88150 -6.44267 -3.84978 0.69213 1.36037 1.76470 1.92588 3.15643 3.24612 3.29675 3.31620 3.40456 3.87793 3.95258 4.22633 4.55597 4.69385 4.79701 4.94084 5.04011 5.11501 5.19640 5.21527 5.24573 5.43474 5.45000 5.50838 5.53225 5.55289 5.71283 5.76473 5.81831 5.88701 5.89996 5.92841 5.98585 6.10318 6.15835 6.17426 6.25489 6.51882 6.57712 7.21212 7.33096 7.52804 7.64534 8.03908 8.29688 8.59279 9.15891 9.52126 10.03859 10.73486 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.002676 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.762751 B =10460.468309 C =12326.571987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.142 4.142 3 S 0.165 5.835 4 C -0.233 4.233 5 C -0.100 4.100 6 C -0.172 4.172 7 C 0.579 3.421 8 O -0.550 6.550 9 N -0.707 5.707 10 C 0.132 3.868 11 C 0.063 3.937 12 H 0.088 0.912 13 C -0.186 4.186 14 N -0.510 5.510 15 C 0.016 3.984 16 C 0.044 3.956 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.153 0.847 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.020 0.980 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.751 10.213 9.176 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.262 4.262 3 S 0.430 5.570 4 C -0.368 4.368 5 C -0.129 4.129 6 C -0.189 4.189 7 C 0.365 3.635 8 O -0.430 6.430 9 N -0.358 5.358 10 C 0.008 3.992 11 C -0.046 4.046 12 H 0.106 0.894 13 C -0.245 4.245 14 N -0.234 5.234 15 C -0.131 4.131 16 C -0.087 4.087 17 C 0.229 3.771 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.187 0.813 32 H 0.170 0.830 33 H 0.248 0.752 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.038 0.962 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.692 12.625 8.739 21.955 hybrid contribution 1.557 -2.717 -0.320 3.148 sum -14.136 9.908 8.419 19.206 Atomic orbital electron populations 1.20617 0.86878 1.04280 1.03385 1.24503 1.01694 0.96824 1.03207 1.82994 0.95444 1.07740 1.70843 1.25398 1.02118 0.97175 1.12098 1.21334 0.94668 0.96597 1.00254 1.20159 0.92790 0.93699 1.12266 1.17535 0.85973 0.83813 0.76151 1.90698 1.14562 1.86269 1.51508 1.45708 1.10898 1.05118 1.74066 1.21386 0.95179 0.80541 1.02111 1.22053 0.93573 0.93176 0.95829 0.89354 1.22401 1.01996 0.97409 1.02707 1.61821 1.06287 1.52963 1.02331 1.22599 0.99159 0.98513 0.92847 1.21880 0.91802 0.94740 1.00298 1.19731 0.83746 0.86396 0.87225 1.90490 1.77820 1.28915 1.48899 1.41871 1.15036 1.28301 1.34903 1.19683 0.95964 1.13099 1.14028 0.87938 1.25253 0.98321 0.95892 0.98464 1.69605 1.25563 1.19267 1.39917 0.85875 0.80037 0.78012 0.80471 1.20400 1.20954 1.19426 0.90419 0.91740 0.87761 0.81348 0.82965 0.75160 0.91332 0.91204 0.91661 0.91805 0.91906 0.92080 0.88639 0.96171 0.89491 0.93181 0.77539 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.60 36.00 0.35 -0.62 16 2 C -0.14 -1.64 6.34 -35.11 -0.22 -1.86 16 3 S 0.16 1.53 22.97 -107.50 -2.47 -0.94 16 4 C -0.23 -2.33 11.12 28.86 0.32 -2.00 16 5 C -0.10 -1.14 9.90 -39.02 -0.39 -1.53 16 6 C -0.17 -2.21 5.98 -104.63 -0.63 -2.84 16 7 C 0.58 8.18 7.79 -12.63 -0.10 8.08 16 8 O -0.55 -8.86 14.06 5.25 0.07 -8.79 16 9 N -0.71 -9.01 5.37 -61.45 -0.33 -9.34 16 10 C 0.13 1.56 4.69 -4.04 -0.02 1.54 16 11 C 0.06 0.72 2.50 -67.71 -0.17 0.55 16 12 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 13 C -0.19 -1.88 8.50 37.16 0.32 -1.56 16 14 N -0.51 -7.58 3.93 -236.33 -0.93 -8.51 16 15 C 0.02 0.26 8.45 60.07 0.51 0.76 16 16 C 0.04 0.72 4.89 -4.98 -0.02 0.70 16 17 C 0.44 9.91 7.47 -10.99 -0.08 9.83 16 18 O -0.58 -14.75 13.91 5.55 0.08 -14.68 16 19 N -0.56 -13.80 5.29 -10.97 -0.06 -13.86 16 20 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 21 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 24 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 1.29 5.94 -51.93 -0.31 0.98 16 31 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.15 1.64 7.10 -52.48 -0.37 1.27 16 33 H 0.41 5.17 6.68 -40.82 -0.27 4.90 16 34 H 0.07 0.88 6.70 -51.93 -0.35 0.53 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.68 6.75 -51.93 -0.35 0.33 16 37 H 0.06 0.67 6.39 -51.93 -0.33 0.34 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.91 6.44 -51.93 -0.33 0.57 16 40 H 0.10 1.85 5.82 -51.93 -0.30 1.55 16 41 H 0.02 0.28 6.28 -51.93 -0.33 -0.04 16 42 H 0.09 1.28 8.00 -51.93 -0.42 0.86 16 43 H 0.05 0.77 6.94 -51.93 -0.36 0.41 16 44 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -31.32 376.93 -8.72 -40.04 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -6.09 Total: 14.80 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.38 Total: 3.29 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.59 Total: -55.12 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.15 Total: -23.46 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.47 Total: -0.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.32 -8.72 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329430316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.314 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds