Wall clock time and date at job start Tue Mar 31 2020 22:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31388 * 1 3 3 Si 1.86801 * 120.00001 * 2 1 4 4 H 1.48506 * 109.47189 * 276.43250 * 3 2 1 5 5 H 1.48497 * 109.47104 * 36.43453 * 3 2 1 6 6 H 1.48502 * 109.47262 * 156.43706 * 3 2 1 7 7 C 1.38951 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00223 * 352.55643 * 7 2 1 9 9 N 1.37030 * 120.00086 * 172.54855 * 7 2 1 10 10 C 1.34782 * 120.00074 * 141.45323 * 9 7 2 11 11 O 1.21602 * 119.99836 * 180.64047 * 10 9 7 12 12 C 1.47464 * 119.99690 * 0.63325 * 10 9 7 13 13 C 1.40331 * 120.50052 * 147.21857 * 12 10 9 14 14 C 1.36948 * 118.46551 * 180.02562 * 13 12 10 15 15 C 1.39160 * 119.40570 * 0.02562 * 14 13 12 16 16 O 1.35503 * 119.51399 * 180.02562 * 15 14 13 17 17 C 1.42893 * 116.99945 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.46889 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49664 * 243.74519 * 18 17 16 20 20 C 1.53006 * 117.49707 * 175.08624 * 18 17 16 21 21 N 1.32431 * 120.97545 * 0.02562 * 15 14 13 22 22 C 1.31695 * 121.67285 * 359.66096 * 21 15 14 23 23 C 1.39340 * 119.99985 * 321.44766 * 9 7 2 24 24 C 1.39094 * 119.69949 * 162.55616 * 23 9 7 25 25 C 1.38375 * 119.09852 * 179.72829 * 24 23 9 26 26 C 1.38823 * 118.49220 * 0.49257 * 25 24 23 27 27 C 1.38154 * 119.32047 * 359.50249 * 26 25 24 28 28 N 1.31879 * 120.84535 * 0.25700 * 27 26 25 29 29 H 0.97001 * 119.99623 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.76822 * 0.02562 * 13 12 10 31 31 H 1.08002 * 120.29857 * 179.97438 * 14 13 12 32 32 H 1.09001 * 109.47508 * 299.99782 * 17 16 15 33 33 H 1.09001 * 109.47229 * 60.00063 * 17 16 15 34 34 H 1.09003 * 115.55157 * 29.41766 * 18 17 16 35 35 H 1.09000 * 117.50041 * 0.02562 * 19 18 17 36 36 H 1.08998 * 117.49919 * 145.01984 * 19 18 17 37 37 H 1.08997 * 117.49692 * 214.97767 * 20 18 17 38 38 H 1.08993 * 117.49990 * 359.97438 * 20 18 17 39 39 H 1.07994 * 119.76019 * 180.33677 * 22 21 15 40 40 H 1.08005 * 120.44705 * 359.95591 * 24 23 9 41 41 H 1.08004 * 120.75239 * 180.24670 * 25 24 23 42 42 H 1.08000 * 120.34351 * 179.78313 * 26 25 24 43 43 H 1.07988 * 119.57783 * 180.27824 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.3596 2.1249 -1.3913 5 1 1.5199 2.6096 0.8315 6 1 3.6068 1.4048 0.5597 7 6 2.0087 -1.2033 -0.0005 8 1 1.4755 -2.1348 0.1202 9 7 3.3703 -1.2083 -0.1544 10 6 4.1250 -2.0749 0.5499 11 8 5.3342 -2.0713 0.4220 12 6 3.4841 -3.0271 1.4757 13 6 4.0368 -4.3002 1.6833 14 6 3.4071 -5.1515 2.5518 15 6 2.2473 -4.7339 3.1975 16 8 1.6227 -5.5742 4.0577 17 6 0.4368 -5.0903 4.6913 18 6 -0.1223 -6.1703 5.6197 19 6 -1.5006 -6.7445 5.2859 20 6 -1.3321 -5.8038 6.4817 21 7 1.7449 -3.5274 2.9838 22 6 2.3205 -2.6743 2.1620 23 6 3.9746 -0.3175 -1.0392 24 6 5.3384 -0.0637 -0.9374 25 6 5.9269 0.8188 -1.8260 26 6 5.1263 1.4273 -2.7831 27 6 3.7781 1.1285 -2.8266 28 7 3.2457 0.2793 -1.9695 29 1 -0.4850 0.8401 0.0004 30 1 4.9380 -4.6017 1.1701 31 1 3.8066 -6.1383 2.7334 32 1 0.6731 -4.1990 5.2724 33 1 -0.3056 -4.8431 3.9324 34 1 0.6149 -6.8486 6.0494 35 1 -2.0089 -6.3531 4.4046 36 1 -1.6704 -7.8004 5.4963 37 1 -1.3910 -6.2412 7.4783 38 1 -1.7294 -4.7932 6.3877 39 1 1.8871 -1.6961 2.0148 40 1 5.9307 -0.5516 -0.1774 41 1 6.9843 1.0324 -1.7737 42 1 5.5537 2.1237 -3.4893 43 1 3.1523 1.5961 -3.5722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331437265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:46 Heat of formation + Delta-G solvation = 75.735096 kcal Electronic energy + Delta-G solvation = -28721.538652 eV Core-core repulsion = 24735.221907 eV Total energy + Delta-G solvation = -3986.316746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82200 -40.11721 -38.69760 -37.82066 -36.59536 -35.40781 -32.26837 -32.20363 -31.78315 -31.00264 -29.25830 -27.46419 -25.55454 -23.99897 -23.43830 -22.65558 -22.56884 -22.09010 -20.70566 -19.82601 -18.58347 -18.24912 -17.22755 -16.64083 -16.02661 -15.96635 -15.73972 -15.34454 -15.21188 -14.96000 -14.45916 -14.29373 -13.89120 -13.82105 -13.50515 -13.16846 -13.05885 -13.04557 -12.84683 -12.49356 -12.39917 -11.99425 -11.75433 -11.72686 -11.40666 -11.23455 -11.17957 -10.67226 -10.58650 -10.16777 -10.04806 -9.81649 -9.60574 -9.44098 -9.12046 -8.93486 -8.67933 -8.47112 -8.12399 -7.55445 -6.54008 -4.35690 1.16747 1.63953 1.78874 1.85890 3.02698 3.21306 3.24930 3.28392 3.36871 3.64364 3.69633 4.12731 4.25205 4.55444 4.58020 4.66937 4.71998 4.83929 5.01147 5.14814 5.21447 5.24952 5.34897 5.37362 5.41809 5.44331 5.52755 5.56490 5.62169 5.65676 5.70212 5.80634 5.92329 5.94878 6.01405 6.08708 6.31132 6.47094 6.57216 6.60609 6.80156 6.86611 6.92600 7.43071 7.48216 7.70090 8.00430 8.22226 8.35402 8.76572 9.07741 9.18433 10.47954 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018091 B = 0.003150 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.317776 B = 8886.928750 C =10064.237829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.101 3.899 3 Si 0.897 3.103 4 H -0.252 1.252 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.370 4.370 8 H 0.117 0.883 9 N -0.382 5.382 10 C 0.545 3.455 11 O -0.557 6.557 12 C -0.201 4.201 13 C 0.003 3.997 14 C -0.210 4.210 15 C 0.330 3.670 16 O -0.306 6.306 17 C 0.101 3.899 18 C -0.158 4.158 19 C -0.177 4.177 20 C -0.170 4.170 21 N -0.548 5.548 22 C 0.203 3.797 23 C 0.346 3.654 24 C -0.207 4.207 25 C -0.066 4.066 26 C -0.229 4.229 27 C 0.124 3.876 28 N -0.491 5.491 29 H 0.280 0.720 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.201 0.799 40 H 0.174 0.826 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -6.006 5.962 8.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.111 4.111 3 Si 0.728 3.272 4 H -0.177 1.177 5 H -0.233 1.233 6 H -0.197 1.197 7 C -0.495 4.495 8 H 0.134 0.866 9 N -0.092 5.092 10 C 0.337 3.663 11 O -0.441 6.441 12 C -0.206 4.206 13 C -0.023 4.023 14 C -0.231 4.231 15 C 0.151 3.849 16 O -0.213 6.213 17 C 0.026 3.974 18 C -0.176 4.176 19 C -0.214 4.214 20 C -0.207 4.207 21 N -0.271 5.271 22 C 0.048 3.952 23 C 0.118 3.882 24 C -0.230 4.230 25 C -0.092 4.092 26 C -0.251 4.251 27 C -0.034 4.034 28 N -0.208 5.208 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.217 0.783 40 H 0.191 0.809 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.340 -6.228 6.448 9.065 hybrid contribution 1.524 0.967 -0.685 1.931 sum 2.864 -5.261 5.763 8.313 Atomic orbital electron populations 1.69649 1.06284 1.28811 1.43174 1.25169 0.95060 0.98936 0.91951 0.86640 0.79451 0.82482 0.78670 1.17736 1.23256 1.19742 1.19163 0.78502 0.96501 1.55346 0.86593 1.41287 1.08278 1.29031 1.30569 1.18013 0.85588 0.82313 0.80392 1.90474 1.14023 1.72218 1.67336 1.20469 1.00006 0.96314 1.03848 1.21116 0.97360 0.90949 0.92892 1.20552 0.97188 1.02609 1.02737 1.20117 0.89236 0.87600 0.87939 1.86110 1.40209 1.40194 1.54818 1.22121 0.85185 0.95396 0.94722 1.22166 0.91736 1.01696 1.01978 1.23119 0.99133 0.99350 0.99838 1.22991 1.00814 1.01069 0.95846 1.67658 1.34527 1.03108 1.21850 1.23999 0.87824 0.98903 0.84512 1.18742 0.88694 0.92006 0.88802 1.22937 0.95322 1.01357 1.03366 1.21405 0.99615 0.94218 0.93974 1.21822 0.95468 1.05043 1.02786 1.22273 0.92711 0.93278 0.95140 1.67113 1.39294 1.10372 1.04022 0.90988 0.83876 0.84322 0.91008 0.91059 0.86856 0.88355 0.88615 0.88369 0.88299 0.78311 0.80913 0.85546 0.85820 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.80 13.96 55.50 0.77 -22.03 16 2 C 0.10 2.62 5.13 -17.48 -0.09 2.53 16 3 Si 0.90 21.59 23.76 -169.99 -4.04 17.55 16 4 H -0.25 -5.86 4.98 56.52 0.28 -5.58 16 5 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.72 6.18 56.52 0.35 -6.37 16 7 C -0.37 -9.38 6.48 -14.96 -0.10 -9.48 16 8 H 0.12 3.08 6.52 -52.49 -0.34 2.73 16 9 N -0.38 -9.21 2.53 -61.83 -0.16 -9.37 16 10 C 0.54 12.18 7.30 -12.50 -0.09 12.09 16 11 O -0.56 -12.60 13.43 5.28 0.07 -12.53 16 12 C -0.20 -4.00 5.47 -104.83 -0.57 -4.58 16 13 C 0.00 0.05 9.69 -39.26 -0.38 -0.34 16 14 C -0.21 -3.24 9.97 -39.71 -0.40 -3.63 16 15 C 0.33 5.60 7.49 -16.95 -0.13 5.48 16 16 O -0.31 -4.68 10.10 -18.20 -0.18 -4.86 16 17 C 0.10 1.35 5.58 37.16 0.21 1.56 16 18 C -0.16 -1.66 6.05 -90.62 -0.55 -2.21 16 19 C -0.18 -1.65 10.18 -26.69 -0.27 -1.92 16 20 C -0.17 -1.49 10.26 -26.69 -0.27 -1.77 16 21 N -0.55 -10.34 9.19 -12.93 -0.12 -10.46 16 22 C 0.20 4.11 8.94 -17.09 -0.15 3.96 16 23 C 0.35 8.15 4.18 -154.70 -0.65 7.50 16 24 C -0.21 -4.39 8.64 -39.21 -0.34 -4.72 16 25 C -0.07 -1.16 10.17 -39.31 -0.40 -1.56 16 26 C -0.23 -3.83 10.11 -39.40 -0.40 -4.23 16 27 C 0.12 2.38 9.12 -17.56 -0.16 2.22 16 28 N -0.49 -11.42 6.13 -12.35 -0.08 -11.49 16 29 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.14 2.13 8.02 -52.48 -0.42 1.71 16 31 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.07 1.01 7.83 -51.93 -0.41 0.61 16 34 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 0.95 8.03 -51.93 -0.42 0.53 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.20 4.39 5.65 -52.49 -0.30 4.10 16 40 H 0.17 3.72 5.05 -53.51 -0.27 3.45 16 41 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 42 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.15 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -29.39 354.42 -8.39 -37.78 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.26 Total: 9.16 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -4.74 Total: 0.90 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.42 Total: -53.35 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.11 Total: -17.39 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.04 Total: 17.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.39 -8.39 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331437265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.518 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds