Wall clock time and date at job start Tue Mar 31 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31388 * 1 3 3 Si 1.86801 * 120.00001 * 2 1 4 4 H 1.48506 * 109.47189 * 276.43250 * 3 2 1 5 5 H 1.48497 * 109.47104 * 36.43453 * 3 2 1 6 6 H 1.48502 * 109.47262 * 156.43706 * 3 2 1 7 7 C 1.38951 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00223 * 352.55643 * 7 2 1 9 9 N 1.37030 * 120.00086 * 172.54855 * 7 2 1 10 10 C 1.34782 * 120.00074 * 141.45323 * 9 7 2 11 11 O 1.21602 * 119.99836 * 180.64047 * 10 9 7 12 12 C 1.47464 * 119.99690 * 0.63325 * 10 9 7 13 13 C 1.40331 * 120.50052 * 147.21857 * 12 10 9 14 14 C 1.36948 * 118.46551 * 180.02562 * 13 12 10 15 15 C 1.39160 * 119.40570 * 0.02562 * 14 13 12 16 16 O 1.35503 * 119.51399 * 180.02562 * 15 14 13 17 17 C 1.42893 * 116.99945 * 179.97438 * 16 15 14 18 18 C 1.53004 * 109.46889 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49664 * 243.74519 * 18 17 16 20 20 C 1.53006 * 117.49707 * 175.08624 * 18 17 16 21 21 N 1.32431 * 120.97545 * 0.02562 * 15 14 13 22 22 C 1.31695 * 121.67285 * 359.66096 * 21 15 14 23 23 C 1.39340 * 119.99985 * 321.44766 * 9 7 2 24 24 C 1.39094 * 119.69949 * 162.55616 * 23 9 7 25 25 C 1.38375 * 119.09852 * 179.72829 * 24 23 9 26 26 C 1.38823 * 118.49220 * 0.49257 * 25 24 23 27 27 C 1.38154 * 119.32047 * 359.50249 * 26 25 24 28 28 N 1.31879 * 120.84535 * 0.25700 * 27 26 25 29 29 H 0.97001 * 119.99623 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.76822 * 0.02562 * 13 12 10 31 31 H 1.08002 * 120.29857 * 179.97438 * 14 13 12 32 32 H 1.09001 * 109.47508 * 299.99782 * 17 16 15 33 33 H 1.09001 * 109.47229 * 60.00063 * 17 16 15 34 34 H 1.09003 * 115.55157 * 29.41766 * 18 17 16 35 35 H 1.09000 * 117.50041 * 0.02562 * 19 18 17 36 36 H 1.08998 * 117.49919 * 145.01984 * 19 18 17 37 37 H 1.08997 * 117.49692 * 214.97767 * 20 18 17 38 38 H 1.08993 * 117.49990 * 359.97438 * 20 18 17 39 39 H 1.07994 * 119.76019 * 180.33677 * 22 21 15 40 40 H 1.08005 * 120.44705 * 359.95591 * 24 23 9 41 41 H 1.08004 * 120.75239 * 180.24670 * 25 24 23 42 42 H 1.08000 * 120.34351 * 179.78313 * 26 25 24 43 43 H 1.07988 * 119.57783 * 180.27824 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.3596 2.1249 -1.3913 5 1 1.5199 2.6096 0.8315 6 1 3.6068 1.4048 0.5597 7 6 2.0087 -1.2033 -0.0005 8 1 1.4755 -2.1348 0.1202 9 7 3.3703 -1.2083 -0.1544 10 6 4.1250 -2.0749 0.5499 11 8 5.3342 -2.0713 0.4220 12 6 3.4841 -3.0271 1.4757 13 6 4.0368 -4.3002 1.6833 14 6 3.4071 -5.1515 2.5518 15 6 2.2473 -4.7339 3.1975 16 8 1.6227 -5.5742 4.0577 17 6 0.4368 -5.0903 4.6913 18 6 -0.1223 -6.1703 5.6197 19 6 -1.5006 -6.7445 5.2859 20 6 -1.3321 -5.8038 6.4817 21 7 1.7449 -3.5274 2.9838 22 6 2.3205 -2.6743 2.1620 23 6 3.9746 -0.3175 -1.0392 24 6 5.3384 -0.0637 -0.9374 25 6 5.9269 0.8188 -1.8260 26 6 5.1263 1.4273 -2.7831 27 6 3.7781 1.1285 -2.8266 28 7 3.2457 0.2793 -1.9695 29 1 -0.4850 0.8401 0.0004 30 1 4.9380 -4.6017 1.1701 31 1 3.8066 -6.1383 2.7334 32 1 0.6731 -4.1990 5.2724 33 1 -0.3056 -4.8431 3.9324 34 1 0.6149 -6.8486 6.0494 35 1 -2.0089 -6.3531 4.4046 36 1 -1.6704 -7.8004 5.4963 37 1 -1.3910 -6.2412 7.4783 38 1 -1.7294 -4.7932 6.3877 39 1 1.8871 -1.6961 2.0148 40 1 5.9307 -0.5516 -0.1774 41 1 6.9843 1.0324 -1.7737 42 1 5.5537 2.1237 -3.4893 43 1 3.1523 1.5961 -3.5722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331437265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:45 Heat of formation + Delta-G solvation = 57.513342 kcal Electronic energy + Delta-G solvation = -28722.328807 eV Core-core repulsion = 24735.221907 eV Total energy + Delta-G solvation = -3987.106900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.41702 -41.54100 -40.15303 -39.07535 -37.62232 -37.15210 -34.16808 -33.64734 -33.31066 -32.46992 -30.73534 -28.60788 -27.41033 -25.49654 -24.88116 -24.13907 -23.59966 -23.27445 -21.62571 -21.48065 -20.35321 -19.53945 -18.82162 -18.02418 -17.68006 -17.28074 -17.13994 -16.87793 -16.55416 -16.39234 -16.02536 -15.60193 -15.42917 -15.13885 -15.04662 -14.63773 -14.52439 -14.41512 -14.25848 -14.13799 -13.89118 -13.51898 -13.39410 -12.90307 -12.63673 -12.39447 -12.33804 -12.22156 -12.03100 -11.52543 -11.42404 -11.02468 -11.00110 -10.94780 -10.88965 -10.52250 -10.31031 -10.12843 -9.56257 -9.22122 -8.50830 -6.31801 -0.32210 0.23669 0.27912 0.35339 1.30203 1.32555 1.36040 1.72067 1.84650 2.08454 2.22105 2.73212 2.82988 2.87064 3.14363 3.33125 3.66770 3.73240 3.75812 3.90417 3.96117 3.98745 4.03648 4.09519 4.21833 4.23450 4.25998 4.38883 4.49232 4.51880 4.55965 4.71714 4.76816 4.90229 4.96456 4.98941 5.12486 5.15872 5.19863 5.22822 5.28798 5.37843 5.40809 5.78612 5.82859 6.14658 6.15891 6.61661 6.76781 6.93274 7.32545 7.39948 8.54162 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018091 B = 0.003150 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.317776 B = 8886.928750 C =10064.237829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.943 3.057 4 H -0.237 1.237 5 H -0.312 1.312 6 H -0.285 1.285 7 C -0.355 4.355 8 H 0.092 0.908 9 N -0.401 5.401 10 C 0.543 3.457 11 O -0.565 6.565 12 C -0.222 4.222 13 C 0.010 3.990 14 C -0.192 4.192 15 C 0.325 3.675 16 O -0.301 6.301 17 C 0.099 3.901 18 C -0.169 4.169 19 C -0.176 4.176 20 C -0.159 4.159 21 N -0.563 5.563 22 C 0.194 3.806 23 C 0.314 3.686 24 C -0.225 4.225 25 C -0.057 4.057 26 C -0.203 4.203 27 C 0.104 3.896 28 N -0.529 5.529 29 H 0.281 0.719 30 H 0.166 0.834 31 H 0.180 0.820 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.172 0.828 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.175 0.825 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 -6.456 5.605 9.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.774 3.226 4 H -0.162 1.162 5 H -0.242 1.242 6 H -0.211 1.211 7 C -0.481 4.481 8 H 0.110 0.890 9 N -0.112 5.112 10 C 0.336 3.664 11 O -0.449 6.449 12 C -0.227 4.227 13 C -0.016 4.016 14 C -0.212 4.212 15 C 0.146 3.854 16 O -0.208 6.208 17 C 0.024 3.976 18 C -0.187 4.187 19 C -0.213 4.213 20 C -0.196 4.196 21 N -0.287 5.287 22 C 0.038 3.962 23 C 0.087 3.913 24 C -0.248 4.248 25 C -0.083 4.083 26 C -0.224 4.224 27 C -0.053 4.053 28 N -0.247 5.247 29 H 0.091 0.909 30 H 0.184 0.816 31 H 0.197 0.803 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.188 0.812 40 H 0.181 0.819 41 H 0.188 0.812 42 H 0.193 0.807 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.463 -6.673 6.073 9.665 hybrid contribution 0.984 1.026 -0.614 1.548 sum 4.447 -5.647 5.460 9.026 Atomic orbital electron populations 1.69710 1.07251 1.29237 1.46004 1.25592 0.95363 1.00870 0.92053 0.85917 0.77655 0.80148 0.78915 1.16187 1.24217 1.21068 1.18858 0.79350 0.95451 1.54465 0.89041 1.41363 1.07719 1.30200 1.31925 1.18346 0.85659 0.82083 0.80328 1.90446 1.14057 1.72518 1.67868 1.20466 1.00468 0.97565 1.04236 1.21371 0.97796 0.89580 0.92805 1.20933 0.95781 1.03723 1.00727 1.20463 0.89819 0.87061 0.88068 1.86136 1.40685 1.39630 1.54314 1.22240 0.84184 0.96610 0.94578 1.22133 0.92543 1.01557 1.02486 1.23203 0.97725 1.00502 0.99883 1.23108 0.98765 1.01034 0.96651 1.67552 1.34984 1.04083 1.22071 1.23459 0.88424 0.98410 0.85900 1.18995 0.89860 0.92748 0.89699 1.22987 0.94386 1.02843 1.04551 1.21939 1.01798 0.92177 0.92358 1.22355 0.94099 1.03800 1.02149 1.22944 0.94720 0.92697 0.94932 1.67022 1.40742 1.11840 1.05101 0.90938 0.81615 0.80296 0.91685 0.92566 0.85937 0.89213 0.86817 0.86207 0.88604 0.81153 0.81864 0.81181 0.80718 0.80885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.34 13.96 21.66 0.30 -50.03 16 2 C 0.07 3.74 5.13 84.93 0.44 4.18 16 3 Si 0.94 45.98 23.76 68.60 1.63 47.61 16 4 H -0.24 -10.78 4.98 99.48 0.50 -10.28 16 5 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.28 -14.28 6.18 99.48 0.62 -13.67 16 7 C -0.36 -19.09 6.48 84.05 0.54 -18.55 16 8 H 0.09 5.25 6.52 -2.91 -0.02 5.23 16 9 N -0.40 -20.10 2.53 -467.78 -1.18 -21.28 16 10 C 0.54 25.12 7.30 86.67 0.63 25.75 16 11 O -0.57 -25.89 13.43 -4.04 -0.05 -25.95 16 12 C -0.22 -9.13 5.47 -20.00 -0.11 -9.24 16 13 C 0.01 0.33 9.69 22.48 0.22 0.54 16 14 C -0.19 -5.55 9.97 22.19 0.22 -5.33 16 15 C 0.33 10.95 7.49 84.82 0.64 11.59 16 16 O -0.30 -8.98 10.10 -88.05 -0.89 -9.86 16 17 C 0.10 2.67 5.58 71.98 0.40 3.07 16 18 C -0.17 -3.38 6.05 -10.79 -0.07 -3.45 16 19 C -0.18 -3.05 10.18 30.62 0.31 -2.73 16 20 C -0.16 -2.54 10.26 30.62 0.31 -2.23 16 21 N -0.56 -22.15 9.19 -307.69 -2.83 -24.98 16 22 C 0.19 8.33 8.94 85.05 0.76 9.09 16 23 C 0.31 14.90 4.18 132.94 0.56 15.46 16 24 C -0.23 -9.31 8.64 22.51 0.19 -9.12 16 25 C -0.06 -1.78 10.17 22.44 0.23 -1.55 16 26 C -0.20 -5.85 10.11 22.39 0.23 -5.62 16 27 C 0.10 3.73 9.12 84.67 0.77 4.50 16 28 N -0.53 -24.45 6.13 -193.00 -1.18 -25.63 16 29 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.17 4.62 8.02 -2.91 -0.02 4.60 16 31 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 32 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.06 1.67 7.83 -2.39 -0.02 1.65 16 34 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 1.70 8.03 -2.39 -0.02 1.68 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.17 8.27 5.65 -2.91 -0.02 8.26 16 40 H 0.16 7.01 5.05 -19.20 -0.10 6.92 16 41 H 0.17 3.79 8.06 -2.91 -0.02 3.76 16 42 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 43 H 0.17 5.10 8.06 -2.92 -0.02 5.08 16 Total: -1.00 -68.03 354.42 2.74 -65.29 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.66 Total: 28.47 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.28 Total: 16.37 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -4.89 Total: -121.93 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.94 Total: -35.81 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.63 Total: 47.61 kcal Total: -68.03 2.74 -65.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331437265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.804 kcal (2) G-P(sol) polarization free energy of solvation -68.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds