Wall clock time and date at job start Tue Mar 31 2020 22:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99534 * 2 1 4 4 H 1.48506 * 109.46779 * 239.99949 * 3 2 1 5 5 H 1.48497 * 109.47493 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46930 * 120.00372 * 3 2 1 7 7 C 1.38943 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99732 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99991 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99955 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47068 * 179.97438 * 12 10 9 14 14 C 1.46909 * 110.99969 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.46778 * 325.00229 * 14 13 12 16 16 C 1.53007 * 109.47153 * 84.99760 * 14 13 12 17 17 O 1.42901 * 109.46826 * 65.00123 * 16 14 13 18 18 C 1.52995 * 109.47147 * 204.99892 * 14 13 12 19 19 N 1.46507 * 109.47092 * 55.00003 * 18 14 13 20 20 C 1.34772 * 119.99641 * 180.02562 * 19 18 14 21 21 O 1.21566 * 120.00472 * 359.97438 * 20 19 18 22 22 C 1.47704 * 119.99538 * 179.97438 * 20 19 18 23 23 C 1.39654 * 120.16841 * 0.02562 * 22 20 19 24 24 C 1.37850 * 119.88070 * 179.97438 * 23 22 20 25 25 C 1.38457 * 120.21841 * 359.97342 * 24 23 22 26 26 C 1.38205 * 120.33997 * 0.02562 * 25 24 23 27 27 C 1.38323 * 120.11600 * 0.02562 * 26 25 24 28 28 F 1.35095 * 120.11080 * 179.97438 * 27 26 25 29 29 H 0.96998 * 120.00305 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00274 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47325 * 59.99584 * 12 10 9 32 32 H 1.09002 * 109.47199 * 299.99869 * 12 10 9 33 33 H 1.00896 * 110.99783 * 303.94617 * 13 12 10 34 34 H 1.08998 * 109.46851 * 184.99982 * 16 14 13 35 35 H 1.09001 * 109.46984 * 305.00253 * 16 14 13 36 36 H 0.96702 * 113.99526 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47347 * 295.00076 * 18 14 13 38 38 H 1.09001 * 109.46968 * 174.99504 * 18 14 13 39 39 H 0.96995 * 119.99985 * 359.97438 * 19 18 14 40 40 H 1.08002 * 120.06168 * 359.95157 * 23 22 20 41 41 H 1.08003 * 119.89231 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.83351 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.94706 * 179.74501 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4983 -7.2708 -0.0028 15 1 0.5848 -7.1893 0.5864 16 6 1.1451 -7.6582 -1.4403 17 8 2.3459 -7.8786 -2.1829 18 6 2.4042 -8.3428 0.6063 19 7 2.8391 -7.9153 1.9384 20 6 3.6501 -8.7062 2.6685 21 8 4.0204 -9.7746 2.2220 22 6 4.0890 -8.2750 4.0113 23 6 3.6653 -7.0487 4.5279 24 6 4.0781 -6.6523 5.7820 25 6 4.9108 -7.4662 6.5311 26 6 5.3356 -8.6816 6.0287 27 6 4.9307 -9.0926 4.7716 28 9 5.3464 -10.2805 4.2804 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6175 -4.9205 -0.8913 32 1 0.6169 -4.9209 0.8886 33 1 2.8333 -5.9120 -0.7830 34 1 0.5487 -8.5705 -1.4346 35 1 0.5739 -6.8536 -1.9035 36 1 2.1976 -8.1286 -3.1052 37 1 3.2761 -8.4870 -0.0317 38 1 1.8541 -9.2803 0.6872 39 1 2.5440 -7.0627 2.2946 40 1 3.0157 -6.4118 3.9458 41 1 3.7509 -5.7037 6.1815 42 1 5.2301 -7.1497 7.5131 43 1 5.9884 -9.3095 6.6168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331667981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:55 Heat of formation + Delta-G solvation = -135.569546 kcal Electronic energy + Delta-G solvation = -28796.804438 eV Core-core repulsion = 24370.555610 eV Total energy + Delta-G solvation = -4426.248827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.92299 -40.09221 -38.84265 -38.25163 -37.60894 -35.46813 -34.18035 -33.68343 -31.78651 -31.26539 -30.68056 -29.90443 -26.24648 -26.09876 -24.09044 -23.76932 -22.68319 -20.93371 -20.51493 -19.38285 -18.34390 -17.97181 -17.59836 -17.17357 -16.71897 -16.17736 -15.84966 -15.63037 -15.45270 -15.29373 -15.06600 -14.72112 -14.54456 -14.40170 -14.27781 -13.83901 -13.68105 -13.40581 -13.25634 -13.19854 -12.53614 -12.34068 -12.24132 -12.09749 -11.85852 -11.65287 -11.56716 -11.50981 -11.29318 -11.06074 -10.47953 -10.26534 -10.20245 -9.89676 -9.54569 -9.41315 -9.02761 -8.85789 -8.54457 -8.15956 -8.01105 -6.46505 -3.87443 0.53039 0.94006 2.76219 3.12968 3.16682 3.22854 3.27182 3.57450 3.84773 3.88795 4.01343 4.12376 4.35821 4.42369 4.54576 4.68650 4.71345 4.86850 4.98725 5.03245 5.09454 5.16175 5.19293 5.26905 5.39016 5.47576 5.65744 5.71118 5.75805 5.79967 5.88192 5.91323 6.03503 6.09422 6.20159 6.47273 6.56049 7.08674 7.42513 7.50659 7.58038 7.61151 8.01157 8.25085 8.56063 9.13227 9.48873 10.00342 10.71065 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.002840 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.499640 B = 9855.305181 C =12152.687745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.047 3.953 13 N -0.660 5.660 14 C 0.074 3.926 15 H 0.095 0.905 16 C 0.047 3.953 17 O -0.565 6.565 18 C 0.138 3.862 19 N -0.705 5.705 20 C 0.555 3.445 21 O -0.536 6.536 22 C -0.170 4.170 23 C -0.053 4.053 24 C -0.138 4.138 25 C -0.067 4.067 26 C -0.169 4.169 27 C 0.155 3.845 28 F -0.117 7.117 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.364 0.636 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.380 0.620 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.408 0.592 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -15.920 7.669 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.464 6.464 12 C -0.086 4.086 13 N -0.294 5.294 14 C -0.037 4.037 15 H 0.113 0.887 16 C -0.033 4.033 17 O -0.370 6.370 18 C 0.014 3.986 19 N -0.357 5.357 20 C 0.341 3.659 21 O -0.414 6.414 22 C -0.174 4.174 23 C -0.071 4.071 24 C -0.156 4.156 25 C -0.085 4.085 26 C -0.188 4.188 27 C 0.135 3.865 28 F -0.095 7.095 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.186 0.814 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.245 0.755 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.125 -16.381 8.546 18.510 hybrid contribution -1.027 1.037 -1.424 2.039 sum 0.099 -15.344 7.122 16.917 Atomic orbital electron populations 1.69598 1.05937 1.28306 1.50524 1.25251 0.95622 0.99715 0.97251 0.85926 0.78781 0.80448 0.79132 1.19904 1.20977 1.19844 1.19653 0.93355 0.82229 1.47729 0.87965 1.41853 1.09145 1.04591 1.64385 1.19766 0.88404 0.84641 0.84712 1.90550 1.13676 1.86979 1.55193 1.21764 0.94480 0.91255 1.01076 1.60157 1.18071 0.98824 1.52335 1.22001 0.97389 0.90784 0.93534 0.88732 1.22832 0.87264 0.99826 0.93425 1.86500 1.31127 1.92286 1.27102 1.21226 0.99110 0.95414 0.82866 1.45670 1.49584 1.22809 1.17612 1.17966 0.79041 0.84385 0.84482 1.90817 1.56089 1.22557 1.71944 1.20124 1.03647 0.97272 0.96398 1.21357 0.96884 0.93455 0.95428 1.21225 0.98995 1.00781 0.94587 1.21222 0.94934 0.92589 0.99790 1.21154 1.03879 0.98933 0.94806 1.17728 0.94675 0.81876 0.92243 1.91585 1.87681 1.42611 1.87637 0.91801 0.77518 0.93888 0.89635 0.81445 0.93050 0.92959 0.77248 0.90135 0.91468 0.75540 0.84207 0.84458 0.84574 0.84200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -8.13 9.68 -14.94 -0.14 -8.27 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 9 N -0.56 -13.62 5.29 -10.96 -0.06 -13.67 16 10 C 0.44 9.79 7.82 -10.99 -0.09 9.70 16 11 O -0.58 -15.19 15.78 5.55 0.09 -15.10 16 12 C 0.05 0.74 5.96 -4.98 -0.03 0.71 16 13 N -0.66 -9.71 5.32 -107.98 -0.57 -10.29 16 14 C 0.07 0.82 2.57 -67.71 -0.17 0.65 16 15 H 0.09 0.89 7.80 -51.93 -0.41 0.48 16 16 C 0.05 0.45 6.72 37.16 0.25 0.70 16 17 O -0.56 -6.02 12.05 -35.23 -0.42 -6.45 16 18 C 0.14 1.73 5.26 -4.04 -0.02 1.71 16 19 N -0.70 -9.23 5.34 -61.30 -0.33 -9.55 16 20 C 0.55 8.40 7.77 -12.40 -0.10 8.31 16 21 O -0.54 -9.90 15.34 5.31 0.08 -9.82 16 22 C -0.17 -2.23 5.88 -104.91 -0.62 -2.84 16 23 C -0.05 -0.56 9.54 -39.19 -0.37 -0.93 16 24 C -0.14 -1.21 10.03 -39.64 -0.40 -1.61 16 25 C -0.07 -0.53 10.03 -39.51 -0.40 -0.93 16 26 C -0.17 -1.60 10.01 -39.56 -0.40 -2.00 16 27 C 0.16 1.99 7.29 -38.96 -0.28 1.71 16 28 F -0.12 -1.76 15.55 2.25 0.04 -1.72 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.39 9.02 7.90 -40.82 -0.32 8.69 16 31 H 0.04 0.61 7.36 -51.93 -0.38 0.23 16 32 H 0.09 1.17 8.06 -51.93 -0.42 0.76 16 33 H 0.36 6.19 7.64 -39.29 -0.30 5.89 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 36 H 0.38 2.41 9.12 45.56 0.42 2.82 16 37 H 0.08 1.20 7.39 -51.93 -0.38 0.82 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.41 4.90 6.17 -40.82 -0.25 4.65 16 40 H 0.14 1.33 6.41 -52.49 -0.34 1.00 16 41 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 42 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -34.85 373.76 -7.10 -41.95 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -4.39 Total: 19.18 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -2.86 Total: 7.41 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.24 Total: -56.65 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.26 Total: -31.37 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.85 -7.10 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331667981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.616 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds