Wall clock time and date at job start Tue Mar 31 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99534 * 2 1 4 4 H 1.48506 * 109.46779 * 239.99949 * 3 2 1 5 5 H 1.48497 * 109.47493 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46930 * 120.00372 * 3 2 1 7 7 C 1.38943 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99759 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99732 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99991 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99955 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47068 * 179.97438 * 12 10 9 14 14 C 1.46909 * 110.99969 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.46778 * 325.00229 * 14 13 12 16 16 C 1.53007 * 109.47153 * 84.99760 * 14 13 12 17 17 O 1.42901 * 109.46826 * 65.00123 * 16 14 13 18 18 C 1.52995 * 109.47147 * 204.99892 * 14 13 12 19 19 N 1.46507 * 109.47092 * 55.00003 * 18 14 13 20 20 C 1.34772 * 119.99641 * 180.02562 * 19 18 14 21 21 O 1.21566 * 120.00472 * 359.97438 * 20 19 18 22 22 C 1.47704 * 119.99538 * 179.97438 * 20 19 18 23 23 C 1.39654 * 120.16841 * 0.02562 * 22 20 19 24 24 C 1.37850 * 119.88070 * 179.97438 * 23 22 20 25 25 C 1.38457 * 120.21841 * 359.97342 * 24 23 22 26 26 C 1.38205 * 120.33997 * 0.02562 * 25 24 23 27 27 C 1.38323 * 120.11600 * 0.02562 * 26 25 24 28 28 F 1.35095 * 120.11080 * 179.97438 * 27 26 25 29 29 H 0.96998 * 120.00305 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00274 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47325 * 59.99584 * 12 10 9 32 32 H 1.09002 * 109.47199 * 299.99869 * 12 10 9 33 33 H 1.00896 * 110.99783 * 303.94617 * 13 12 10 34 34 H 1.08998 * 109.46851 * 184.99982 * 16 14 13 35 35 H 1.09001 * 109.46984 * 305.00253 * 16 14 13 36 36 H 0.96702 * 113.99526 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47347 * 295.00076 * 18 14 13 38 38 H 1.09001 * 109.46968 * 174.99504 * 18 14 13 39 39 H 0.96995 * 119.99985 * 359.97438 * 19 18 14 40 40 H 1.08002 * 120.06168 * 359.95157 * 23 22 20 41 41 H 1.08003 * 119.89231 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.83351 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.94706 * 179.74501 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 1.4983 -7.2708 -0.0028 15 1 0.5848 -7.1893 0.5864 16 6 1.1451 -7.6582 -1.4403 17 8 2.3459 -7.8786 -2.1829 18 6 2.4042 -8.3428 0.6063 19 7 2.8391 -7.9153 1.9384 20 6 3.6501 -8.7062 2.6685 21 8 4.0204 -9.7746 2.2220 22 6 4.0890 -8.2750 4.0113 23 6 3.6653 -7.0487 4.5279 24 6 4.0781 -6.6523 5.7820 25 6 4.9108 -7.4662 6.5311 26 6 5.3356 -8.6816 6.0287 27 6 4.9307 -9.0926 4.7716 28 9 5.3464 -10.2805 4.2804 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6175 -4.9205 -0.8913 32 1 0.6169 -4.9209 0.8886 33 1 2.8333 -5.9120 -0.7830 34 1 0.5487 -8.5705 -1.4346 35 1 0.5739 -6.8536 -1.9035 36 1 2.1976 -8.1286 -3.1052 37 1 3.2761 -8.4870 -0.0317 38 1 1.8541 -9.2803 0.6872 39 1 2.5440 -7.0627 2.2946 40 1 3.0157 -6.4118 3.9458 41 1 3.7509 -5.7037 6.1815 42 1 5.2301 -7.1497 7.5131 43 1 5.9884 -9.3095 6.6168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331667981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:54 Heat of formation + Delta-G solvation = -165.202012 kcal Electronic energy + Delta-G solvation = -28798.089398 eV Core-core repulsion = 24370.555610 eV Total energy + Delta-G solvation = -4427.533787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.93032 -41.13117 -40.22195 -39.36167 -38.73978 -36.47750 -35.93830 -35.02427 -33.24468 -32.64679 -31.47309 -30.97292 -27.83891 -26.98910 -25.65202 -24.71087 -23.50476 -21.92244 -21.50765 -21.09498 -19.90941 -19.27051 -18.46593 -18.09897 -17.88782 -17.42833 -16.90117 -16.84723 -16.56397 -16.48770 -16.21026 -16.10067 -15.83831 -15.53085 -15.33282 -15.14389 -15.05366 -14.51647 -14.30740 -14.12970 -13.95288 -13.53617 -13.33081 -13.24198 -13.01163 -12.98618 -12.88106 -12.59452 -12.40899 -12.36322 -12.23646 -12.11618 -11.47887 -11.08021 -10.92590 -10.31828 -10.29780 -9.99913 -9.98362 -9.75955 -9.34547 -8.44584 -5.92568 -0.32516 0.15844 1.40945 1.43473 1.53457 1.77275 2.09496 2.11957 2.30472 2.68856 2.85000 3.17587 3.23290 3.34680 3.58895 3.66836 3.71953 3.81460 3.99106 4.05147 4.27410 4.29513 4.31848 4.34962 4.45591 4.53980 4.63016 4.65902 4.75141 4.77661 4.96423 5.00666 5.02050 5.21308 5.35990 5.40512 5.43372 5.80709 5.90171 6.11199 6.32684 6.50046 6.63519 6.89097 7.15114 7.16010 7.60269 8.16296 8.72385 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.002840 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.499640 B = 9855.305181 C =12152.687745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.063 3.937 13 N -0.671 5.671 14 C 0.079 3.921 15 H 0.123 0.877 16 C 0.048 3.952 17 O -0.590 6.590 18 C 0.141 3.859 19 N -0.696 5.696 20 C 0.547 3.453 21 O -0.581 6.581 22 C -0.195 4.195 23 C -0.058 4.058 24 C -0.134 4.134 25 C -0.053 4.053 26 C -0.164 4.164 27 C 0.122 3.878 28 F -0.140 7.140 29 H 0.277 0.723 30 H 0.397 0.603 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.349 0.651 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.413 0.587 40 H 0.146 0.854 41 H 0.165 0.835 42 H 0.177 0.823 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 -15.084 9.186 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.226 3.774 11 O -0.510 6.510 12 C -0.069 4.069 13 N -0.304 5.304 14 C -0.031 4.031 15 H 0.140 0.860 16 C -0.031 4.031 17 O -0.398 6.398 18 C 0.016 3.984 19 N -0.347 5.347 20 C 0.335 3.665 21 O -0.463 6.463 22 C -0.199 4.199 23 C -0.077 4.077 24 C -0.152 4.152 25 C -0.071 4.071 26 C -0.182 4.182 27 C 0.102 3.898 28 F -0.118 7.118 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.168 0.832 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.247 0.753 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.252 0.748 40 H 0.164 0.836 41 H 0.182 0.818 42 H 0.194 0.806 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.154 -15.541 10.056 18.511 hybrid contribution -0.618 0.757 -1.853 2.095 sum -0.772 -14.784 8.203 16.925 Atomic orbital electron populations 1.69651 1.06694 1.29275 1.50422 1.25949 0.96480 1.02175 0.96392 0.85061 0.77824 0.77019 0.78899 1.20014 1.19577 1.19648 1.19591 0.92631 0.84138 1.49856 0.90520 1.41901 1.09297 1.04600 1.65174 1.20904 0.88224 0.86184 0.82108 1.90524 1.16031 1.87946 1.56478 1.21643 0.93942 0.87749 1.03564 1.60105 1.18360 1.00039 1.51892 1.22091 0.97453 0.88319 0.95256 0.85962 1.22843 0.87067 1.01252 0.91968 1.86469 1.32204 1.92488 1.28665 1.21218 0.98383 0.96606 0.82157 1.45665 1.48809 1.22647 1.17564 1.18430 0.78713 0.83942 0.85407 1.90775 1.57901 1.24462 1.73160 1.20120 1.05265 0.98765 0.95766 1.21507 0.97133 0.92558 0.96509 1.21625 0.98208 1.01742 0.93612 1.21710 0.93178 0.91214 1.00969 1.21486 1.03504 0.99791 0.93427 1.18204 0.96109 0.81653 0.93881 1.91518 1.88134 1.43978 1.88195 0.91346 0.76913 0.91479 0.86653 0.83155 0.90504 0.92309 0.75284 0.93024 0.90468 0.74842 0.83600 0.81793 0.80583 0.81931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.87 13.05 21.66 0.28 -47.59 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 3 Si 0.99 41.79 29.55 68.60 2.03 43.82 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.33 -18.24 9.68 84.04 0.81 -17.43 16 8 H 0.08 4.53 7.16 -2.91 -0.02 4.50 16 9 N -0.57 -27.69 5.29 -306.98 -1.62 -29.31 16 10 C 0.44 19.43 7.82 87.66 0.69 20.11 16 11 O -0.62 -33.27 15.78 -3.07 -0.05 -33.32 16 12 C 0.06 1.86 5.96 85.56 0.51 2.37 16 13 N -0.67 -19.05 5.32 -495.55 -2.63 -21.68 16 14 C 0.08 1.61 2.57 44.91 0.12 1.73 16 15 H 0.12 1.86 7.80 -2.38 -0.02 1.84 16 16 C 0.05 0.82 6.72 71.98 0.48 1.30 16 17 O -0.59 -12.16 12.05 -148.98 -1.80 -13.95 16 18 C 0.14 3.51 5.26 86.38 0.45 3.97 16 19 N -0.70 -18.43 5.34 -466.11 -2.49 -20.91 16 20 C 0.55 17.35 7.77 86.75 0.67 18.02 16 21 O -0.58 -22.86 15.34 -3.92 -0.06 -22.92 16 22 C -0.20 -5.23 5.88 -20.05 -0.12 -5.34 16 23 C -0.06 -1.19 9.54 22.52 0.21 -0.97 16 24 C -0.13 -1.98 10.03 22.23 0.22 -1.76 16 25 C -0.05 -0.67 10.03 22.31 0.22 -0.44 16 26 C -0.16 -2.83 10.01 22.28 0.22 -2.61 16 27 C 0.12 3.20 7.29 22.67 0.17 3.36 16 28 F -0.14 -4.47 15.55 44.97 0.70 -3.77 16 29 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.40 18.05 7.90 -92.71 -0.73 17.32 16 31 H 0.07 1.71 7.36 -2.39 -0.02 1.69 16 32 H 0.12 2.77 8.06 -2.39 -0.02 2.75 16 33 H 0.35 11.87 7.64 -89.70 -0.69 11.18 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.94 7.35 -2.39 -0.02 0.92 16 36 H 0.40 4.67 9.12 -74.06 -0.68 4.00 16 37 H 0.05 1.61 7.39 -2.39 -0.02 1.59 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.41 9.77 6.17 -92.71 -0.57 9.20 16 40 H 0.15 2.65 6.41 -2.91 -0.02 2.63 16 41 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 43 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -79.51 373.76 -2.06 -81.57 By element: Atomic # 1 Polarization: 47.38 SS G_CDS: -1.55 Total: 45.82 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 5.14 Total: 22.26 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.46 Total: -119.50 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -1.90 Total: -70.20 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.70 Total: -3.77 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -79.51 -2.06 -81.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331667981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.635 kcal (2) G-P(sol) polarization free energy of solvation -79.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds