Wall clock time and date at job start Tue Mar 31 2020 23:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38678 * 120.79174 * 2 1 4 4 C 1.38175 * 119.16373 * 179.97438 * 3 2 1 5 5 N 1.31885 * 120.77010 * 0.02562 * 4 3 2 6 6 C 1.31863 * 121.72261 * 359.68108 * 5 4 3 7 7 C 1.38228 * 120.75819 * 0.58630 * 6 5 4 8 8 C 1.50705 * 120.41399 * 179.73149 * 7 6 5 9 9 N 1.46898 * 109.46661 * 259.71789 * 8 7 6 10 10 C 1.46906 * 110.99888 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.46727 * 325.00012 * 10 9 8 12 12 C 1.52995 * 109.46889 * 85.00162 * 10 9 8 13 13 O 1.42905 * 109.47617 * 65.00010 * 12 10 9 14 14 C 1.53000 * 109.46965 * 204.99952 * 10 9 8 15 15 N 1.46498 * 109.47043 * 55.00259 * 14 10 9 16 16 C 1.34775 * 119.99673 * 179.97438 * 15 14 10 17 17 O 1.21288 * 120.00324 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99969 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47113 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99886 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99856 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00241 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00263 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99825 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47217 * 89.99502 * 24 22 20 26 26 H 1.48502 * 109.47349 * 210.00011 * 24 22 20 27 27 H 1.48510 * 109.47096 * 329.99809 * 24 22 20 28 28 H 1.08994 * 109.47361 * 270.02870 * 1 2 3 29 29 H 1.09000 * 109.46901 * 30.02772 * 1 2 3 30 30 H 1.09001 * 109.47075 * 150.02187 * 1 2 3 31 31 H 1.07998 * 120.41862 * 359.94842 * 3 2 1 32 32 H 1.08000 * 119.62030 * 180.02562 * 4 3 2 33 33 H 1.07994 * 119.61578 * 180.28776 * 6 5 4 34 34 H 1.08995 * 109.47155 * 139.71838 * 8 7 6 35 35 H 1.08997 * 109.47111 * 19.71759 * 8 7 6 36 36 H 1.00902 * 111.00533 * 56.04452 * 9 8 7 37 37 H 1.09005 * 109.47116 * 185.00057 * 12 10 9 38 38 H 1.08999 * 109.47249 * 304.99813 * 12 10 9 39 39 H 0.96694 * 113.99954 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.46848 * 175.00326 * 14 10 9 41 41 H 1.08999 * 109.47502 * 294.99922 * 14 10 9 42 42 H 0.96995 * 120.00227 * 359.97438 * 15 14 10 43 43 H 1.08994 * 109.47278 * 300.00141 * 18 16 15 44 44 H 1.09001 * 109.46716 * 60.00198 * 18 16 15 45 45 H 0.97001 * 120.00040 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 0.0005 5 7 4.2403 0.0001 0.0005 6 6 3.5983 -1.1517 0.0063 7 6 2.2166 -1.1909 0.0004 8 6 1.4908 -2.5116 0.0009 9 7 1.0443 -2.8254 -1.3629 10 6 0.3306 -4.1089 -1.4010 11 1 0.7798 -4.7958 -0.6837 12 6 -1.1397 -3.8856 -1.0414 13 8 -1.7585 -3.0789 -2.0457 14 6 0.4270 -4.7045 -2.8070 15 7 1.8351 -4.8073 -3.1982 16 6 2.1641 -5.3081 -4.4054 17 8 1.2946 -5.6741 -5.1677 18 6 3.6125 -5.4134 -4.8082 19 16 3.7266 -6.1196 -6.4708 20 6 5.4761 -6.1274 -6.6805 21 1 6.1161 -5.7604 -5.8918 22 6 6.0317 -6.6063 -7.8589 23 7 7.3386 -6.6126 -8.0153 24 14 4.9248 -7.2418 -9.2227 25 1 4.5716 -6.1243 -10.1348 26 1 5.6365 -8.2980 -9.9864 27 1 3.6859 -7.8083 -8.6313 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6968 2.1378 -0.0008 32 1 4.1583 2.0754 0.0010 33 1 4.1586 -2.0749 0.0108 34 1 0.6259 -2.4507 0.6614 35 1 2.1622 -3.2949 0.3527 36 1 1.8210 -2.8240 -2.0071 37 1 -1.6495 -4.8473 -0.9827 38 1 -1.2054 -3.3801 -0.0780 39 1 -2.6941 -2.8969 -1.8826 40 1 -0.0252 -5.6963 -2.8132 41 1 -0.0997 -4.0607 -3.5113 42 1 2.5304 -4.5150 -2.5885 43 1 4.0642 -4.4215 -4.8026 44 1 4.1397 -6.0567 -4.1036 45 1 7.7269 -6.9469 -8.8389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331680321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:51 Heat of formation + Delta-G solvation = -81.037782 kcal Electronic energy + Delta-G solvation = -26452.086211 eV Core-core repulsion = 22594.415235 eV Total energy + Delta-G solvation = -3857.670977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30837 -40.78445 -38.94532 -36.69322 -35.70652 -34.68570 -34.43926 -32.90505 -31.31107 -29.96040 -28.65152 -27.88517 -26.62821 -25.96490 -23.49854 -22.27919 -21.88140 -21.54524 -19.93330 -18.41223 -18.16503 -17.70319 -17.53076 -17.25516 -17.10203 -16.77861 -16.33398 -16.07694 -15.84685 -15.68011 -15.03146 -14.94429 -14.81721 -14.69687 -14.50348 -14.35044 -13.87693 -13.66915 -13.53336 -13.41546 -13.35648 -13.31060 -13.07071 -12.99438 -12.70064 -12.63504 -12.07145 -11.98556 -11.85125 -11.18161 -11.05358 -10.74798 -10.55166 -10.35571 -10.29935 -10.18512 -9.96493 -9.39195 -9.00882 -8.52516 -6.23457 0.16186 0.36445 0.97353 1.30973 1.45773 1.53188 1.54847 2.17326 2.24815 2.69315 2.76637 2.85765 3.20598 3.44924 3.57756 3.78289 3.81251 3.85711 3.89738 4.00008 4.07007 4.19520 4.23181 4.38771 4.44038 4.52147 4.56762 4.62625 4.68330 4.73221 4.77989 4.79885 4.86250 4.94954 5.02342 5.13657 5.33219 5.33986 5.52109 5.69737 5.83590 5.99053 6.10436 6.23920 6.35733 6.92609 7.07065 7.09440 7.13982 8.60020 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.002551 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.094484 B =10975.163883 C =12768.436330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.026 4.026 3 C -0.182 4.182 4 C 0.084 3.916 5 N -0.524 5.524 6 C 0.091 3.909 7 C -0.144 4.144 8 C 0.106 3.894 9 N -0.678 5.678 10 C 0.085 3.915 11 H 0.087 0.913 12 C 0.091 3.909 13 O -0.580 6.580 14 C 0.126 3.874 15 N -0.714 5.714 16 C 0.537 3.463 17 O -0.560 6.560 18 C -0.112 4.112 19 S -0.174 6.174 20 C -0.529 4.529 21 H 0.062 0.938 22 C 0.045 3.955 23 N -0.918 5.918 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.339 0.661 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.390 0.610 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.410 0.590 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.025 12.604 25.009 33.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.202 4.202 4 C -0.072 4.072 5 N -0.233 5.233 6 C -0.066 4.066 7 C -0.147 4.147 8 C -0.023 4.023 9 N -0.312 5.312 10 C -0.025 4.025 11 H 0.105 0.895 12 C 0.012 3.988 13 O -0.387 6.387 14 C 0.002 3.998 15 N -0.369 5.369 16 C 0.322 3.678 17 O -0.438 6.438 18 C -0.263 4.263 19 S 0.053 5.947 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.160 4.160 23 N -0.556 5.556 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.159 0.841 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.239 0.761 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.247 0.753 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.385 12.301 23.457 32.823 hybrid contribution 1.138 -0.150 0.584 1.288 sum -18.247 12.152 24.041 32.536 Atomic orbital electron populations 1.20914 0.88668 1.04610 1.03189 1.20549 0.98078 0.92202 0.92575 1.22350 0.95336 0.99829 1.02637 1.23126 0.92749 0.96460 0.94844 1.67682 1.42397 0.99464 1.13766 1.22992 0.91882 0.96519 0.95233 1.20796 0.94332 0.96438 1.03088 1.20886 0.98807 0.91861 0.90699 1.60448 1.31301 1.32111 1.07315 1.21925 0.95723 0.89957 0.94884 0.89536 1.22147 0.90852 0.94639 0.91169 1.86574 1.29477 1.73295 1.49363 1.21445 0.80946 1.00873 0.96528 1.45741 1.09549 1.64878 1.16691 1.19920 0.89611 0.76479 0.81769 1.90700 1.51337 1.49198 1.52525 1.23275 0.96805 1.06129 1.00102 1.84710 1.08226 1.82838 1.18975 1.22459 0.90537 1.48606 1.06047 0.92016 1.25575 0.96116 0.94351 0.99997 1.70014 1.11401 1.45971 1.28171 0.85864 0.80619 0.79870 0.79994 1.18769 1.18248 1.15973 0.89634 0.91018 0.89290 0.82796 0.81366 0.82063 0.88459 0.92465 0.84094 0.92089 0.91511 0.76098 0.91264 0.91898 0.75308 0.87112 0.86673 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.36 71.23 0.67 -0.52 16 2 C -0.03 -0.37 5.92 -19.67 -0.12 -0.49 16 3 C -0.18 -2.64 9.82 22.36 0.22 -2.42 16 4 C 0.08 1.48 11.18 84.67 0.95 2.43 16 5 N -0.52 -11.48 10.36 -195.85 -2.03 -13.51 16 6 C 0.09 1.64 10.83 84.69 0.92 2.56 16 7 C -0.14 -2.13 5.41 -19.77 -0.11 -2.24 16 8 C 0.11 1.07 4.78 85.56 0.41 1.48 16 9 N -0.68 -8.92 5.68 -495.58 -2.81 -11.74 16 10 C 0.08 1.02 2.60 44.91 0.12 1.13 16 11 H 0.09 0.70 7.80 -2.39 -0.02 0.68 16 12 C 0.09 0.84 6.80 71.98 0.49 1.33 16 13 O -0.58 -7.81 12.64 -148.98 -1.88 -9.69 16 14 C 0.13 2.55 5.20 86.38 0.45 3.00 16 15 N -0.71 -16.29 4.99 -463.05 -2.31 -18.60 16 16 C 0.54 18.42 7.85 87.66 0.69 19.11 16 17 O -0.56 -24.17 15.86 -3.05 -0.05 -24.21 16 18 C -0.11 -4.23 6.16 71.24 0.44 -3.80 16 19 S -0.17 -8.88 18.55 -56.49 -1.05 -9.92 16 20 C -0.53 -31.09 10.04 67.95 0.68 -30.41 16 21 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 22 C 0.04 2.67 5.50 84.86 0.47 3.13 16 23 N -0.92 -56.46 13.97 21.65 0.30 -56.16 16 24 Si 0.91 45.46 27.74 68.60 1.90 47.36 16 25 H -0.26 -12.79 7.11 99.48 0.71 -12.09 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.68 8.10 -2.39 -0.02 0.66 16 30 H 0.09 1.05 6.54 -2.39 -0.02 1.03 16 31 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.16 2.34 8.04 -2.91 -0.02 2.32 16 34 H 0.10 0.73 6.60 -2.39 -0.02 0.72 16 35 H 0.06 0.44 7.93 -2.39 -0.02 0.42 16 36 H 0.34 5.42 6.71 -89.69 -0.60 4.82 16 37 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.07 0.38 7.35 -2.39 -0.02 0.36 16 39 H 0.39 2.01 9.12 -74.06 -0.68 1.33 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.67 7.39 -2.39 -0.02 1.65 16 42 H 0.41 6.78 7.37 -92.71 -0.68 6.10 16 43 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 44 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 45 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -81.27 388.30 -2.62 -83.89 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.96 Total: 18.28 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 6.27 Total: -5.70 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -6.85 Total: -100.00 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.93 Total: -33.90 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.92 kcal Total: -81.27 -2.62 -83.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331680321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.856 kcal (2) G-P(sol) polarization free energy of solvation -81.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds