Wall clock time and date at job start Tue Mar 31 2020 22:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99842 * 2 1 4 4 H 1.48503 * 109.47094 * 269.99936 * 3 2 1 5 5 H 1.48501 * 109.47344 * 30.00256 * 3 2 1 6 6 H 1.48500 * 109.47159 * 150.00316 * 3 2 1 7 7 C 1.38798 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99996 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99882 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99684 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99791 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99941 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99596 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.43979 * 323.91016 * 14 13 11 16 16 C 1.54264 * 110.48575 * 86.45425 * 14 13 11 17 17 C 1.53881 * 106.60199 * 142.41314 * 16 14 13 18 18 C 1.54271 * 106.59353 * 0.02562 * 17 16 14 19 19 H 1.09000 * 110.48787 * 95.19781 * 18 17 16 20 20 C 1.53001 * 110.48480 * 217.70671 * 18 17 16 21 21 N 1.46902 * 109.46896 * 293.54760 * 20 18 17 22 22 C 1.46904 * 110.99852 * 179.97438 * 21 20 18 23 23 C 1.50693 * 109.47186 * 179.97438 * 22 21 20 24 24 C 1.41387 * 126.80461 * 94.99855 * 23 22 21 25 25 C 1.35449 * 103.98917 * 180.02562 * 24 23 22 26 26 O 1.34042 * 106.44291 * 0.02562 * 25 24 23 27 27 N 1.20923 * 111.56962 * 359.97438 * 26 25 24 28 28 C 1.54889 * 110.59556 * 201.29223 * 14 13 11 29 29 H 0.97008 * 119.99918 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46934 * 60.00256 * 10 9 7 31 31 H 1.09001 * 109.46832 * 300.00339 * 10 9 7 32 32 H 0.96995 * 119.99994 * 0.02562 * 13 11 10 33 33 H 1.09004 * 110.03258 * 23.13509 * 16 14 13 34 34 H 1.08994 * 110.07772 * 261.72733 * 16 14 13 35 35 H 1.08988 * 110.03785 * 240.71741 * 17 16 14 36 36 H 1.09001 * 110.06552 * 119.30492 * 17 16 14 37 37 H 1.08992 * 109.46893 * 173.54672 * 20 18 17 38 38 H 1.09004 * 109.46850 * 53.54337 * 20 18 17 39 39 H 1.00901 * 111.00355 * 56.04686 * 21 20 18 40 40 H 1.08997 * 109.46926 * 59.99697 * 22 21 20 41 41 H 1.09006 * 109.47035 * 299.99949 * 22 21 20 42 42 H 1.08004 * 128.00352 * 359.97438 * 24 23 22 43 43 H 1.07997 * 126.78069 * 180.02562 * 25 24 23 44 44 H 1.09002 * 110.75760 * 85.01342 * 28 14 13 45 45 H 1.08997 * 110.75866 * 321.63970 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0008 12 8 6.3441 -2.2961 -0.0014 13 7 6.0457 -4.4946 -0.0011 14 6 7.4908 -4.7356 -0.0016 15 1 8.0018 -3.9840 -0.6033 16 6 8.0384 -4.7364 1.4406 17 6 9.1223 -5.8272 1.4986 18 6 9.1959 -6.4506 0.0894 19 1 9.9840 -5.9774 -0.4964 20 6 9.4326 -7.9593 0.1831 21 7 10.7665 -8.2118 0.7443 22 6 11.0290 -9.6533 0.8497 23 6 12.4034 -9.8726 1.4274 24 6 12.7253 -10.0971 2.7857 25 6 14.0732 -10.2313 2.7849 26 8 14.4678 -10.0897 1.5118 27 7 13.5296 -9.8920 0.7749 28 6 7.8058 -6.1577 -0.5284 29 1 -0.4850 0.8401 0.0004 30 1 3.6434 -3.4317 -0.8907 31 1 3.6440 -3.4313 0.8893 32 1 5.4291 -5.2433 -0.0018 33 1 7.2382 -4.9676 2.1437 34 1 8.4731 -3.7651 1.6763 35 1 8.8482 -6.5875 2.2298 36 1 10.0835 -5.3856 1.7619 37 1 9.3676 -8.3996 -0.8118 38 1 8.6763 -8.4063 0.8284 39 1 10.8740 -7.7586 1.6393 40 1 10.9749 -10.1058 -0.1404 41 1 10.2838 -10.1117 1.4999 42 1 12.0524 -10.1487 3.6289 43 1 14.7051 -10.4160 3.6410 44 1 7.8582 -6.1635 -1.6171 45 1 7.0658 -6.8743 -0.1723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332236899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:54 Heat of formation + Delta-G solvation = 12.694909 kcal Electronic energy + Delta-G solvation = -25320.809161 eV Core-core repulsion = 21467.202739 eV Total energy + Delta-G solvation = -3853.606422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.39780 -39.87145 -38.43088 -36.70203 -34.46477 -33.28942 -32.44082 -32.11768 -30.24027 -29.49098 -28.04140 -26.18005 -25.58512 -23.79285 -23.48002 -21.63768 -21.00301 -20.76463 -19.62047 -18.28453 -17.99541 -17.85295 -17.01034 -16.47436 -16.11661 -15.90506 -15.24022 -15.02601 -14.97904 -14.79129 -14.51086 -13.97718 -13.82152 -13.71479 -13.44156 -13.17816 -12.81550 -12.78516 -12.63640 -12.47923 -12.13122 -11.72495 -11.57820 -11.34325 -11.26423 -11.08049 -11.00768 -10.96878 -10.69481 -10.63803 -10.56756 -10.13306 -9.85718 -9.50214 -9.02102 -9.00247 -8.93171 -8.50066 -6.91834 -6.29213 -4.00880 1.03781 1.69042 2.76836 2.79410 2.97702 3.29633 3.33912 3.50553 3.54033 3.66192 3.79072 4.11030 4.23641 4.29270 4.33125 4.59200 4.62480 4.72426 4.75505 4.79065 4.93445 5.00220 5.09708 5.09995 5.12531 5.18192 5.20070 5.25515 5.33567 5.34563 5.46246 5.48528 5.56775 5.63944 5.76649 5.81883 5.98098 6.00852 6.10104 6.12623 6.40329 6.62521 6.79781 7.63743 7.81378 7.93815 8.41193 8.51329 9.17093 10.80001 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.044448 B = 0.001461 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.794387 B =19163.047229 C =19353.913460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.731 5.731 14 C 0.144 3.856 15 H 0.093 0.907 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.088 4.088 19 H 0.088 0.912 20 C 0.069 3.931 21 N -0.683 5.683 22 C 0.137 3.863 23 C 0.015 3.985 24 C -0.233 4.233 25 C -0.059 4.059 26 O 0.102 5.898 27 N -0.346 5.346 28 C -0.123 4.123 29 H 0.271 0.729 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.399 0.601 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.345 0.655 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.170 0.830 43 H 0.217 0.783 44 H 0.075 0.925 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.912 -24.735 6.030 35.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.384 5.384 14 C 0.039 3.961 15 H 0.111 0.889 16 C -0.175 4.175 17 C -0.156 4.156 18 C -0.107 4.107 19 H 0.107 0.893 20 C -0.060 4.060 21 N -0.316 5.316 22 C 0.007 3.993 23 C -0.144 4.144 24 C -0.255 4.255 25 C -0.140 4.140 26 O 0.033 5.967 27 N -0.048 5.048 28 C -0.162 4.162 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.163 0.837 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.188 0.812 43 H 0.233 0.767 44 H 0.094 0.906 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 26.659 -22.848 4.117 35.351 hybrid contribution -2.123 -1.024 1.735 2.927 sum 24.536 -23.872 5.852 34.729 Atomic orbital electron populations 1.69941 1.05920 1.27754 1.48100 1.24708 0.94442 0.98952 0.93159 0.86737 0.81894 0.83279 0.79951 1.19196 1.19937 1.15936 1.22322 0.88311 0.97529 1.58777 0.89416 1.84793 1.09226 1.00124 1.97423 1.23288 0.94146 1.04345 1.05746 1.20292 0.90521 0.82445 0.75075 1.90697 1.58759 1.42203 1.47667 1.46018 1.07107 1.07951 1.77362 1.21723 0.81200 0.96836 0.96343 0.88914 1.22555 0.98329 0.99380 0.97232 1.22183 0.99244 0.97829 0.96393 1.21947 0.97355 0.94449 0.96996 0.89314 1.22019 0.88021 0.95957 1.00026 1.60406 1.29981 1.09265 1.31945 1.20158 0.88156 0.90006 1.00977 1.23499 0.96056 1.03541 0.91318 1.22789 0.96034 1.08878 0.97827 1.26052 0.96164 1.02833 0.88974 1.84884 1.31298 1.65065 1.15437 1.73895 0.95953 1.16774 1.18165 1.22760 0.96621 0.95914 1.00886 0.91950 0.88532 0.88539 0.76735 0.91341 0.91081 0.92127 0.91467 0.90545 0.94685 0.83699 0.89124 0.92724 0.81201 0.76680 0.90597 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.83 27.74 -169.99 -4.71 17.12 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 10 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 11 C 0.53 9.30 7.84 -10.99 -0.09 9.22 16 12 O -0.52 -11.13 15.57 5.55 0.09 -11.04 16 13 N -0.73 -9.02 5.12 -52.20 -0.27 -9.28 16 14 C 0.14 1.56 3.15 -66.27 -0.21 1.36 16 15 H 0.09 1.21 7.66 -51.93 -0.40 0.81 16 16 C -0.14 -1.39 6.53 -25.61 -0.17 -1.56 16 17 C -0.12 -0.88 5.54 -25.61 -0.14 -1.02 16 18 C -0.09 -0.62 3.12 -88.94 -0.28 -0.90 16 19 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 20 C 0.07 0.41 5.06 -3.82 -0.02 0.39 16 21 N -0.68 -4.62 6.49 -115.06 -0.75 -5.36 16 22 C 0.14 0.85 6.27 -4.98 -0.03 0.82 16 23 C 0.02 0.11 6.84 -82.10 -0.56 -0.45 16 24 C -0.23 -1.15 11.12 -39.38 -0.44 -1.58 16 25 C -0.06 -0.24 12.30 29.74 0.37 0.12 16 26 O 0.10 0.77 11.20 17.17 0.19 0.96 16 27 N -0.35 -3.28 12.07 33.42 0.40 -2.87 16 28 C -0.12 -0.93 5.92 -24.73 -0.15 -1.07 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 31 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 32 H 0.40 3.76 8.54 -40.82 -0.35 3.42 16 33 H 0.07 0.72 8.04 -51.93 -0.42 0.31 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.40 7.77 -51.94 -0.40 -0.01 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.19 8.05 -51.93 -0.42 -0.23 16 39 H 0.34 2.16 7.92 -39.29 -0.31 1.84 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.17 0.42 8.06 -52.48 -0.42 0.00 16 43 H 0.22 -0.06 8.06 -52.49 -0.42 -0.48 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.48 7.95 -51.93 -0.41 0.06 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -35.77 388.72 -8.62 -44.39 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.94 Total: 0.51 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.28 Total: -8.87 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.16 Total: -43.33 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.28 Total: -10.08 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.77 -8.62 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332236899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.081 kcal (2) G-P(sol) polarization free energy of solvation -35.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds