Wall clock time and date at job start Tue Mar 31 2020 22:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99842 * 2 1 4 4 H 1.48503 * 109.47094 * 269.99936 * 3 2 1 5 5 H 1.48501 * 109.47344 * 30.00256 * 3 2 1 6 6 H 1.48500 * 109.47159 * 150.00316 * 3 2 1 7 7 C 1.38798 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99996 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99882 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99684 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99791 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99941 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99596 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.43979 * 323.91016 * 14 13 11 16 16 C 1.54264 * 110.48575 * 86.45425 * 14 13 11 17 17 C 1.53881 * 106.60199 * 142.41314 * 16 14 13 18 18 C 1.54271 * 106.59353 * 0.02562 * 17 16 14 19 19 H 1.09000 * 110.48787 * 95.19781 * 18 17 16 20 20 C 1.53001 * 110.48480 * 217.70671 * 18 17 16 21 21 N 1.46902 * 109.46896 * 293.54760 * 20 18 17 22 22 C 1.46904 * 110.99852 * 179.97438 * 21 20 18 23 23 C 1.50693 * 109.47186 * 179.97438 * 22 21 20 24 24 C 1.41387 * 126.80461 * 94.99855 * 23 22 21 25 25 C 1.35449 * 103.98917 * 180.02562 * 24 23 22 26 26 O 1.34042 * 106.44291 * 0.02562 * 25 24 23 27 27 N 1.20923 * 111.56962 * 359.97438 * 26 25 24 28 28 C 1.54889 * 110.59556 * 201.29223 * 14 13 11 29 29 H 0.97008 * 119.99918 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.46934 * 60.00256 * 10 9 7 31 31 H 1.09001 * 109.46832 * 300.00339 * 10 9 7 32 32 H 0.96995 * 119.99994 * 0.02562 * 13 11 10 33 33 H 1.09004 * 110.03258 * 23.13509 * 16 14 13 34 34 H 1.08994 * 110.07772 * 261.72733 * 16 14 13 35 35 H 1.08988 * 110.03785 * 240.71741 * 17 16 14 36 36 H 1.09001 * 110.06552 * 119.30492 * 17 16 14 37 37 H 1.08992 * 109.46893 * 173.54672 * 20 18 17 38 38 H 1.09004 * 109.46850 * 53.54337 * 20 18 17 39 39 H 1.00901 * 111.00355 * 56.04686 * 21 20 18 40 40 H 1.08997 * 109.46926 * 59.99697 * 22 21 20 41 41 H 1.09006 * 109.47035 * 299.99949 * 22 21 20 42 42 H 1.08004 * 128.00352 * 359.97438 * 24 23 22 43 43 H 1.07997 * 126.78069 * 180.02562 * 25 24 23 44 44 H 1.09002 * 110.75760 * 85.01342 * 28 14 13 45 45 H 1.08997 * 110.75866 * 321.63970 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0008 12 8 6.3441 -2.2961 -0.0014 13 7 6.0457 -4.4946 -0.0011 14 6 7.4908 -4.7356 -0.0016 15 1 8.0018 -3.9840 -0.6033 16 6 8.0384 -4.7364 1.4406 17 6 9.1223 -5.8272 1.4986 18 6 9.1959 -6.4506 0.0894 19 1 9.9840 -5.9774 -0.4964 20 6 9.4326 -7.9593 0.1831 21 7 10.7665 -8.2118 0.7443 22 6 11.0290 -9.6533 0.8497 23 6 12.4034 -9.8726 1.4274 24 6 12.7253 -10.0971 2.7857 25 6 14.0732 -10.2313 2.7849 26 8 14.4678 -10.0897 1.5118 27 7 13.5296 -9.8920 0.7749 28 6 7.8058 -6.1577 -0.5284 29 1 -0.4850 0.8401 0.0004 30 1 3.6434 -3.4317 -0.8907 31 1 3.6440 -3.4313 0.8893 32 1 5.4291 -5.2433 -0.0018 33 1 7.2382 -4.9676 2.1437 34 1 8.4731 -3.7651 1.6763 35 1 8.8482 -6.5875 2.2298 36 1 10.0835 -5.3856 1.7619 37 1 9.3676 -8.3996 -0.8118 38 1 8.6763 -8.4063 0.8284 39 1 10.8740 -7.7586 1.6393 40 1 10.9749 -10.1058 -0.1404 41 1 10.2838 -10.1117 1.4999 42 1 12.0524 -10.1487 3.6289 43 1 14.7051 -10.4160 3.6410 44 1 7.8582 -6.1635 -1.6171 45 1 7.0658 -6.8743 -0.1723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332236899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:53 Heat of formation + Delta-G solvation = -13.517760 kcal Electronic energy + Delta-G solvation = -25321.945828 eV Core-core repulsion = 21467.202739 eV Total energy + Delta-G solvation = -3854.743089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.85735 -40.97993 -39.35770 -37.33172 -35.24131 -34.67725 -34.11577 -32.55122 -31.34669 -30.37352 -28.87899 -27.85608 -26.81057 -24.32360 -23.91954 -22.27748 -22.01144 -21.56539 -20.42811 -19.85911 -18.70231 -18.48969 -17.94279 -17.62915 -17.16270 -17.00031 -16.66820 -16.23451 -15.85500 -15.66043 -15.41789 -15.11206 -14.87557 -14.66760 -14.38866 -14.23061 -13.90022 -13.76769 -13.36929 -13.30839 -13.24371 -13.03525 -12.96214 -12.65583 -12.48038 -12.18748 -11.97410 -11.87087 -11.72469 -11.58667 -11.35886 -11.17658 -11.12680 -10.97157 -10.53908 -10.53732 -10.09066 -9.43818 -9.00105 -8.52103 -6.22860 0.66393 0.98957 1.28626 1.30874 1.46519 1.55843 1.57124 2.22388 2.26689 2.50621 2.71729 2.86306 3.12965 3.33738 3.53082 3.63751 3.72699 3.89355 3.99700 4.22407 4.24920 4.27484 4.35162 4.42812 4.46331 4.46935 4.48408 4.53051 4.60464 4.68243 4.73561 4.81622 4.87589 4.92294 5.06002 5.13793 5.16835 5.18049 5.28400 5.47620 5.58801 5.70223 5.95428 6.10801 6.36363 6.50479 6.93324 7.22603 7.40285 8.60244 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.044448 B = 0.001461 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.794387 B =19163.047229 C =19353.913460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.705 5.705 14 C 0.138 3.862 15 H 0.067 0.933 16 C -0.134 4.134 17 C -0.108 4.108 18 C -0.081 4.081 19 H 0.075 0.925 20 C 0.075 3.925 21 N -0.696 5.696 22 C 0.139 3.861 23 C 0.003 3.997 24 C -0.241 4.241 25 C -0.048 4.048 26 O 0.083 5.917 27 N -0.391 5.391 28 C -0.111 4.111 29 H 0.277 0.723 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.417 0.583 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.347 0.653 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.195 0.805 43 H 0.258 0.742 44 H 0.080 0.920 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.923 -26.591 7.157 37.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.048 5.952 10 C -0.262 4.262 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.358 5.358 14 C 0.033 3.967 15 H 0.085 0.915 16 C -0.173 4.173 17 C -0.146 4.146 18 C -0.101 4.101 19 H 0.093 0.907 20 C -0.053 4.053 21 N -0.330 5.330 22 C 0.009 3.991 23 C -0.156 4.156 24 C -0.262 4.262 25 C -0.129 4.129 26 O 0.017 5.983 27 N -0.097 5.097 28 C -0.149 4.149 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.254 0.746 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.166 0.834 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.212 0.788 43 H 0.274 0.726 44 H 0.098 0.902 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 27.676 -24.768 5.251 37.509 hybrid contribution -2.388 -0.612 1.422 2.846 sum 25.288 -25.379 6.673 36.444 Atomic orbital electron populations 1.70014 1.07272 1.29007 1.49146 1.25539 0.95245 1.02174 0.92869 0.85881 0.80665 0.79706 0.80200 1.18740 1.18264 1.16190 1.22463 0.90234 0.96712 1.58272 0.91907 1.84741 1.06451 1.06386 1.97590 1.23282 0.95975 0.99496 1.07462 1.19990 0.89325 0.83588 0.75108 1.90689 1.59345 1.43926 1.50273 1.45799 1.08375 1.06662 1.74975 1.21881 0.79579 0.98399 0.96844 0.91450 1.22506 0.99077 0.99236 0.96501 1.22109 0.98119 0.97236 0.97181 1.21848 0.96599 0.95279 0.96323 0.90676 1.21946 0.88156 0.94821 1.00420 1.60353 1.30502 1.09784 1.32319 1.20175 0.88232 0.89728 1.00940 1.23897 0.96043 1.03136 0.92561 1.23143 0.96788 1.08866 0.97428 1.26892 0.96741 1.00671 0.88603 1.84824 1.31210 1.65449 1.16806 1.73891 0.96944 1.19076 1.19770 1.22708 0.97339 0.93697 1.01165 0.91365 0.86823 0.86799 0.74558 0.91321 0.93551 0.90282 0.91598 0.90531 0.93138 0.83399 0.90080 0.90641 0.78758 0.72616 0.90153 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.77 13.97 21.65 0.30 -55.47 16 2 C 0.05 2.77 5.50 84.86 0.47 3.24 16 3 Si 0.91 45.17 27.74 68.60 1.90 47.07 16 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.79 6.74 99.48 0.67 -11.12 16 7 C -0.53 -30.83 10.04 67.95 0.68 -30.15 16 8 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 9 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 10 C -0.11 -4.14 6.16 71.24 0.44 -3.70 16 11 C 0.53 18.19 7.84 87.66 0.69 18.88 16 12 O -0.56 -24.27 15.57 -3.05 -0.05 -24.31 16 13 N -0.70 -16.01 5.12 -437.45 -2.24 -18.25 16 14 C 0.14 2.80 3.15 46.07 0.15 2.95 16 15 H 0.07 1.76 7.66 -2.39 -0.02 1.74 16 16 C -0.13 -2.59 6.53 31.32 0.20 -2.38 16 17 C -0.11 -1.39 5.54 31.32 0.17 -1.22 16 18 C -0.08 -0.97 3.12 -9.71 -0.03 -1.00 16 19 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 20 C 0.08 0.71 5.06 86.30 0.44 1.14 16 21 N -0.70 -8.14 6.49 -517.93 -3.36 -11.51 16 22 C 0.14 1.50 6.27 85.55 0.54 2.04 16 23 C 0.00 0.04 6.84 43.58 0.30 0.33 16 24 C -0.24 -1.84 11.12 22.40 0.25 -1.59 16 25 C -0.05 -0.30 12.30 67.17 0.83 0.53 16 26 O 0.08 1.21 11.20 71.61 0.80 2.01 16 27 N -0.39 -7.40 12.07 -49.56 -0.60 -8.00 16 28 C -0.11 -1.37 5.92 31.89 0.19 -1.18 16 29 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 30 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 31 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.42 6.54 8.54 -92.71 -0.79 5.75 16 33 H 0.07 1.32 8.04 -2.38 -0.02 1.30 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 0.77 7.77 -2.39 -0.02 0.75 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.35 8.05 -2.39 -0.02 0.33 16 39 H 0.35 3.62 7.92 -89.69 -0.71 2.91 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 43 H 0.26 -1.02 8.06 -2.91 -0.02 -1.04 16 44 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 0.83 7.95 -2.39 -0.02 0.81 16 Total: -1.00 -80.07 388.72 0.49 -79.59 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -0.53 Total: 11.06 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.30 Total: -12.11 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -5.90 Total: -93.23 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.75 Total: -22.30 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -80.07 0.49 -79.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332236899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.069 kcal (2) G-P(sol) polarization free energy of solvation -80.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds