Wall clock time and date at job start Tue Mar 31 2020 22:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 119.99848 * 2 1 4 4 H 1.48496 * 109.47084 * 270.00304 * 3 2 1 5 5 H 1.48499 * 109.47349 * 30.00486 * 3 2 1 6 6 H 1.48506 * 109.47048 * 150.00279 * 3 2 1 7 7 C 1.38794 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00241 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99880 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00204 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47445 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99707 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00285 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00322 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.05465 * 325.04315 * 14 13 11 16 16 C 1.53876 * 110.02963 * 86.45662 * 14 13 11 17 17 C 1.54261 * 106.59992 * 119.28957 * 16 14 13 18 18 C 1.54898 * 104.19332 * 336.38968 * 17 16 14 19 19 H 1.09004 * 110.75056 * 279.44539 * 18 17 16 20 20 C 1.53002 * 110.75528 * 156.26173 * 18 17 16 21 21 N 1.46900 * 109.47420 * 68.93114 * 20 18 17 22 22 C 1.46891 * 110.99804 * 179.97438 * 21 20 18 23 23 C 1.50698 * 109.47164 * 180.02562 * 22 21 20 24 24 C 1.41384 * 126.80687 * 94.99982 * 23 22 21 25 25 C 1.35448 * 103.98528 * 180.20620 * 24 23 22 26 26 O 1.34034 * 106.44971 * 359.65054 * 25 24 23 27 27 N 1.20926 * 111.56615 * 0.38038 * 26 25 24 28 28 C 1.54461 * 109.85896 * 203.62638 * 14 13 11 29 29 H 0.97002 * 119.99948 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47302 * 59.99976 * 10 9 7 31 31 H 1.09005 * 109.47195 * 300.00198 * 10 9 7 32 32 H 0.97000 * 120.00056 * 0.02562 * 13 11 10 33 33 H 1.09001 * 110.03475 * 359.97438 * 16 14 13 34 34 H 1.09001 * 110.07221 * 238.59310 * 16 14 13 35 35 H 1.08999 * 110.48962 * 217.71464 * 17 16 14 36 36 H 1.09000 * 110.60317 * 95.11990 * 17 16 14 37 37 H 1.09000 * 109.46558 * 308.93061 * 20 18 17 38 38 H 1.09002 * 109.46995 * 188.93230 * 20 18 17 39 39 H 1.00903 * 111.00040 * 303.95376 * 21 20 18 40 40 H 1.09001 * 109.47669 * 60.00412 * 22 21 20 41 41 H 1.09003 * 109.47465 * 299.99934 * 22 21 20 42 42 H 1.08002 * 128.00125 * 359.93933 * 24 23 22 43 43 H 1.08001 * 126.77311 * 179.73996 * 25 24 23 44 44 H 1.08995 * 110.40474 * 145.52125 * 28 14 13 45 45 H 1.08992 * 110.66310 * 22.80845 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3440 -2.2963 -0.0014 13 7 6.0457 -4.4947 -0.0030 14 6 7.4907 -4.7358 -0.0037 15 1 7.9973 -3.9695 -0.5905 16 6 8.0259 -4.7347 1.4390 17 6 8.6350 -6.1306 1.6842 18 6 7.9150 -7.0441 0.6613 19 1 6.9307 -7.3345 1.0287 20 6 8.7610 -8.2800 0.3485 21 7 8.8131 -9.1500 1.5311 22 6 9.6184 -10.3497 1.2669 23 6 9.6483 -11.2161 2.4995 24 6 8.7989 -12.3092 2.7873 25 6 9.2226 -12.7428 3.9986 26 8 10.2422 -11.9475 4.3511 27 7 10.4615 -11.1067 3.5101 28 6 7.7889 -6.1349 -0.5863 29 1 -0.4850 0.8401 0.0004 30 1 3.6433 -3.4310 -0.8926 31 1 3.6440 -3.4322 0.8873 32 1 5.4290 -5.2435 -0.0036 33 1 7.2106 -4.5542 2.1396 34 1 8.7920 -3.9677 1.5532 35 1 8.4307 -6.4625 2.7021 36 1 9.7085 -6.1191 1.4959 37 1 9.7712 -7.9703 0.0805 38 1 8.3150 -8.8245 -0.4838 39 1 9.1632 -8.6486 2.3337 40 1 10.6346 -10.0549 1.0049 41 1 9.1779 -10.9084 0.4411 42 1 7.9953 -12.7039 2.1833 43 1 8.8193 -13.5676 4.5673 44 1 8.7246 -6.1223 -1.1451 45 1 6.9688 -6.4700 -1.2211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332236902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:01 Heat of formation + Delta-G solvation = 13.155159 kcal Electronic energy + Delta-G solvation = -25468.141879 eV Core-core repulsion = 21614.555415 eV Total energy + Delta-G solvation = -3853.586464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.37928 -39.91946 -38.34864 -36.69626 -34.41468 -33.17963 -32.42852 -32.09589 -30.23957 -29.47779 -28.01332 -26.25356 -25.57901 -23.72196 -23.58453 -21.51449 -20.97552 -20.29842 -20.10360 -18.32129 -17.98993 -17.85039 -16.78284 -16.31595 -16.22270 -15.75244 -15.51595 -15.05594 -14.96631 -14.66671 -14.41991 -13.98827 -13.74000 -13.63569 -13.47385 -13.25292 -12.82879 -12.79197 -12.70326 -12.44593 -11.83442 -11.74247 -11.52687 -11.32311 -11.25065 -11.05722 -10.99833 -10.95171 -10.80351 -10.62966 -10.56293 -10.11750 -9.84643 -9.47420 -9.00821 -8.99522 -8.92416 -8.48765 -6.90557 -6.28114 -3.99644 1.04765 1.72629 2.79222 2.81473 2.99911 3.32520 3.36190 3.51373 3.52674 3.68937 3.85546 4.04898 4.24773 4.31624 4.34085 4.54731 4.67913 4.75695 4.80577 4.81954 4.95577 5.05512 5.10797 5.11192 5.16607 5.19827 5.27254 5.30080 5.34009 5.34327 5.52071 5.53667 5.55471 5.64079 5.77557 5.81797 5.98658 6.03284 6.07940 6.15634 6.41403 6.66716 6.78863 7.66456 7.79238 7.94988 8.42470 8.53569 9.18172 10.81110 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.001593 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.378479 B =17574.593231 C =18029.947900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.730 5.730 14 C 0.144 3.856 15 H 0.089 0.911 16 C -0.134 4.134 17 C -0.121 4.121 18 C -0.092 4.092 19 H 0.088 0.912 20 C 0.068 3.932 21 N -0.684 5.684 22 C 0.137 3.863 23 C 0.018 3.982 24 C -0.218 4.218 25 C -0.061 4.061 26 O 0.100 5.900 27 N -0.363 5.363 28 C -0.124 4.124 29 H 0.270 0.730 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.398 0.602 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.346 0.654 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.172 0.828 43 H 0.217 0.783 44 H 0.079 0.921 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.276 -27.862 3.451 34.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.384 5.384 14 C 0.039 3.961 15 H 0.107 0.893 16 C -0.173 4.173 17 C -0.159 4.159 18 C -0.110 4.110 19 H 0.106 0.894 20 C -0.061 4.061 21 N -0.316 5.316 22 C 0.008 3.992 23 C -0.141 4.141 24 C -0.240 4.240 25 C -0.142 4.142 26 O 0.033 5.967 27 N -0.067 5.067 28 C -0.163 4.163 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.233 0.767 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.165 0.835 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.190 0.810 43 H 0.234 0.766 44 H 0.097 0.903 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.819 -25.660 3.591 33.873 hybrid contribution -1.051 -0.867 -0.318 1.399 sum 20.768 -26.527 3.273 33.848 Atomic orbital electron populations 1.69943 1.05908 1.27740 1.48124 1.24712 0.94451 0.98957 0.93191 0.86731 0.81897 0.83280 0.79918 1.19224 1.19950 1.15939 1.22325 0.88317 0.97531 1.58721 0.89402 1.84781 1.09226 1.00190 1.97421 1.23287 0.94193 1.04282 1.05748 1.20286 0.90508 0.82480 0.75092 1.90694 1.58761 1.42238 1.47785 1.46132 1.07150 1.07886 1.77270 1.21519 0.81381 0.96959 0.96259 0.89265 1.22582 1.01020 0.96831 0.96821 1.22446 0.99373 0.94893 0.99179 1.22186 0.99960 0.93197 0.95693 0.89368 1.21998 0.98457 0.93062 0.92611 1.60463 1.55689 1.08097 1.07379 1.20176 0.96919 0.90492 0.91652 1.23533 0.94741 0.98431 0.97385 1.22745 1.04018 0.98998 0.98254 1.26061 0.91657 0.98989 0.97541 1.84843 1.41728 1.32081 1.38096 1.73862 1.22432 1.09919 1.00452 1.22705 1.02620 0.93724 0.97204 0.91963 0.88563 0.88526 0.76737 0.90944 0.91180 0.91486 0.91830 0.94742 0.90538 0.83533 0.93330 0.88604 0.81009 0.76639 0.90287 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.91 27.74 -169.99 -4.71 17.19 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 10 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 11 C 0.53 9.34 7.84 -10.99 -0.09 9.26 16 12 O -0.52 -11.18 15.54 5.55 0.09 -11.09 16 13 N -0.73 -9.09 4.94 -52.62 -0.26 -9.35 16 14 C 0.14 1.56 3.23 -66.71 -0.22 1.35 16 15 H 0.09 1.15 7.61 -51.93 -0.40 0.75 16 16 C -0.13 -1.41 6.59 -25.61 -0.17 -1.58 16 17 C -0.12 -0.95 5.61 -25.07 -0.14 -1.10 16 18 C -0.09 -0.63 3.12 -88.62 -0.28 -0.91 16 19 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 20 C 0.07 0.41 5.17 -3.82 -0.02 0.39 16 21 N -0.68 -4.69 6.49 -115.06 -0.75 -5.44 16 22 C 0.14 0.86 6.27 -4.98 -0.03 0.83 16 23 C 0.02 0.14 6.84 -82.10 -0.56 -0.42 16 24 C -0.22 -1.20 11.12 -39.38 -0.44 -1.64 16 25 C -0.06 -0.27 12.30 29.74 0.37 0.09 16 26 O 0.10 0.76 11.20 17.19 0.19 0.95 16 27 N -0.36 -3.34 12.07 33.42 0.40 -2.94 16 28 C -0.12 -0.92 5.89 -24.97 -0.15 -1.07 16 29 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.10 1.75 8.14 -51.91 -0.42 1.32 16 32 H 0.40 3.90 8.55 -40.82 -0.35 3.55 16 33 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.54 8.03 -51.93 -0.42 0.12 16 36 H 0.06 0.47 7.97 -51.93 -0.41 0.05 16 37 H 0.03 0.20 8.05 -51.93 -0.42 -0.21 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.35 2.62 7.97 -39.29 -0.31 2.31 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.22 0.03 8.06 -52.49 -0.42 -0.39 16 44 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 45 H 0.08 0.54 7.97 -51.93 -0.41 0.12 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -35.40 388.69 -8.62 -44.01 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.93 Total: 1.37 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.28 Total: -9.06 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.17 Total: -43.60 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.28 Total: -10.14 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.40 -8.62 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332236902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.166 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds