Wall clock time and date at job start Tue Mar 31 2020 22:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86794 * 119.99848 * 2 1 4 4 H 1.48496 * 109.47084 * 270.00304 * 3 2 1 5 5 H 1.48499 * 109.47349 * 30.00486 * 3 2 1 6 6 H 1.48506 * 109.47048 * 150.00279 * 3 2 1 7 7 C 1.38794 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00241 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99880 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00204 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47445 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99707 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00285 * 179.97438 * 11 10 9 14 14 C 1.46504 * 120.00322 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.05465 * 325.04315 * 14 13 11 16 16 C 1.53876 * 110.02963 * 86.45662 * 14 13 11 17 17 C 1.54261 * 106.59992 * 119.28957 * 16 14 13 18 18 C 1.54898 * 104.19332 * 336.38968 * 17 16 14 19 19 H 1.09004 * 110.75056 * 279.44539 * 18 17 16 20 20 C 1.53002 * 110.75528 * 156.26173 * 18 17 16 21 21 N 1.46900 * 109.47420 * 68.93114 * 20 18 17 22 22 C 1.46891 * 110.99804 * 179.97438 * 21 20 18 23 23 C 1.50698 * 109.47164 * 180.02562 * 22 21 20 24 24 C 1.41384 * 126.80687 * 94.99982 * 23 22 21 25 25 C 1.35448 * 103.98528 * 180.20620 * 24 23 22 26 26 O 1.34034 * 106.44971 * 359.65054 * 25 24 23 27 27 N 1.20926 * 111.56615 * 0.38038 * 26 25 24 28 28 C 1.54461 * 109.85896 * 203.62638 * 14 13 11 29 29 H 0.97002 * 119.99948 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47302 * 59.99976 * 10 9 7 31 31 H 1.09005 * 109.47195 * 300.00198 * 10 9 7 32 32 H 0.97000 * 120.00056 * 0.02562 * 13 11 10 33 33 H 1.09001 * 110.03475 * 359.97438 * 16 14 13 34 34 H 1.09001 * 110.07221 * 238.59310 * 16 14 13 35 35 H 1.08999 * 110.48962 * 217.71464 * 17 16 14 36 36 H 1.09000 * 110.60317 * 95.11990 * 17 16 14 37 37 H 1.09000 * 109.46558 * 308.93061 * 20 18 17 38 38 H 1.09002 * 109.46995 * 188.93230 * 20 18 17 39 39 H 1.00903 * 111.00040 * 303.95376 * 21 20 18 40 40 H 1.09001 * 109.47669 * 60.00412 * 22 21 20 41 41 H 1.09003 * 109.47465 * 299.99934 * 22 21 20 42 42 H 1.08002 * 128.00125 * 359.93933 * 24 23 22 43 43 H 1.08001 * 126.77311 * 179.73996 * 25 24 23 44 44 H 1.08995 * 110.40474 * 145.52125 * 28 14 13 45 45 H 1.08992 * 110.66310 * 22.80845 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2020 -0.0012 10 6 4.0866 -2.9845 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3440 -2.2963 -0.0014 13 7 6.0457 -4.4947 -0.0030 14 6 7.4907 -4.7358 -0.0037 15 1 7.9973 -3.9695 -0.5905 16 6 8.0259 -4.7347 1.4390 17 6 8.6350 -6.1306 1.6842 18 6 7.9150 -7.0441 0.6613 19 1 6.9307 -7.3345 1.0287 20 6 8.7610 -8.2800 0.3485 21 7 8.8131 -9.1500 1.5311 22 6 9.6184 -10.3497 1.2669 23 6 9.6483 -11.2161 2.4995 24 6 8.7989 -12.3092 2.7873 25 6 9.2226 -12.7428 3.9986 26 8 10.2422 -11.9475 4.3511 27 7 10.4615 -11.1067 3.5101 28 6 7.7889 -6.1349 -0.5863 29 1 -0.4850 0.8401 0.0004 30 1 3.6433 -3.4310 -0.8926 31 1 3.6440 -3.4322 0.8873 32 1 5.4290 -5.2435 -0.0036 33 1 7.2106 -4.5542 2.1396 34 1 8.7920 -3.9677 1.5532 35 1 8.4307 -6.4625 2.7021 36 1 9.7085 -6.1191 1.4959 37 1 9.7712 -7.9703 0.0805 38 1 8.3150 -8.8245 -0.4838 39 1 9.1632 -8.6486 2.3337 40 1 10.6346 -10.0549 1.0049 41 1 9.1779 -10.9084 0.4411 42 1 7.9953 -12.7039 2.1833 43 1 8.8193 -13.5676 4.5673 44 1 8.7246 -6.1223 -1.1451 45 1 6.9688 -6.4700 -1.2211 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332236902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:00 Heat of formation + Delta-G solvation = -12.474989 kcal Electronic energy + Delta-G solvation = -25469.253286 eV Core-core repulsion = 21614.555415 eV Total energy + Delta-G solvation = -3854.697871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.85602 -41.03070 -39.30051 -37.33986 -35.16133 -34.67411 -34.06398 -32.55514 -31.32562 -30.40205 -28.87476 -27.85287 -26.89412 -24.28280 -24.02602 -22.27133 -21.87615 -21.14879 -20.86852 -19.88476 -18.76297 -18.49689 -17.99205 -17.41123 -17.08142 -16.96800 -16.57413 -16.17508 -16.07270 -15.78944 -15.42262 -15.08551 -14.84993 -14.62918 -14.39258 -14.21180 -13.98823 -13.76013 -13.35660 -13.29869 -13.18965 -13.04915 -12.89742 -12.65970 -12.32184 -12.17533 -11.96546 -11.86331 -11.80481 -11.56615 -11.49059 -11.17406 -11.11348 -10.95278 -10.53811 -10.53704 -10.09577 -9.47869 -8.99802 -8.51836 -6.22592 0.63978 0.99278 1.29741 1.30882 1.46670 1.56167 1.58169 2.23505 2.28814 2.49305 2.72430 2.86380 3.07545 3.37618 3.52318 3.65995 3.66675 3.87494 3.94857 4.22885 4.26537 4.34780 4.37472 4.42496 4.44443 4.47163 4.53157 4.57760 4.67288 4.68025 4.69756 4.76103 4.90656 4.93573 5.03840 5.07385 5.19097 5.19651 5.28683 5.47542 5.61053 5.70482 5.94294 6.11057 6.25180 6.50896 6.93424 7.23182 7.35531 8.60522 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.001593 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.378479 B =17574.593231 C =18029.947900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.177 6.177 10 C -0.112 4.112 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.705 5.705 14 C 0.139 3.861 15 H 0.070 0.930 16 C -0.133 4.133 17 C -0.113 4.113 18 C -0.082 4.082 19 H 0.084 0.916 20 C 0.072 3.928 21 N -0.689 5.689 22 C 0.139 3.861 23 C 0.005 3.995 24 C -0.232 4.232 25 C -0.049 4.049 26 O 0.082 5.918 27 N -0.401 5.401 28 C -0.112 4.112 29 H 0.277 0.723 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.415 0.585 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.088 0.912 39 H 0.340 0.660 40 H 0.044 0.956 41 H 0.112 0.888 42 H 0.193 0.807 43 H 0.258 0.742 44 H 0.094 0.906 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.116 -29.929 3.074 36.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.263 4.263 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.359 5.359 14 C 0.034 3.966 15 H 0.088 0.912 16 C -0.172 4.172 17 C -0.151 4.151 18 C -0.101 4.101 19 H 0.103 0.897 20 C -0.056 4.056 21 N -0.321 5.321 22 C 0.009 3.991 23 C -0.153 4.153 24 C -0.253 4.253 25 C -0.130 4.130 26 O 0.017 5.983 27 N -0.107 5.107 28 C -0.150 4.150 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.252 0.748 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.158 0.842 40 H 0.063 0.937 41 H 0.130 0.870 42 H 0.210 0.790 43 H 0.274 0.726 44 H 0.112 0.888 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 22.654 -27.797 3.221 36.003 hybrid contribution -1.302 -0.420 -0.176 1.380 sum 21.351 -28.217 3.045 35.515 Atomic orbital electron populations 1.70018 1.07264 1.29005 1.49134 1.25556 0.95276 1.02218 0.92890 0.85866 0.80631 0.79640 0.80221 1.18654 1.18297 1.16219 1.22467 0.90262 0.96709 1.58265 0.91944 1.84714 1.06424 1.06341 1.97584 1.23283 0.96094 0.99506 1.07371 1.19967 0.89281 0.83616 0.75141 1.90684 1.59303 1.43895 1.50355 1.45937 1.08484 1.06553 1.74879 1.21704 0.79664 0.98654 0.96532 0.91215 1.22534 1.00248 0.98323 0.96122 1.22383 0.99785 0.93273 0.99622 1.22089 0.99825 0.93287 0.94874 0.89724 1.21966 0.98546 0.92528 0.92600 1.60487 1.55808 1.08325 1.07448 1.20235 0.96804 0.90317 0.91705 1.23915 0.94868 0.99146 0.97398 1.23090 1.04530 0.98684 0.99022 1.26872 0.89974 0.98675 0.97443 1.84790 1.42866 1.32474 1.38148 1.73859 1.24042 1.11364 1.01472 1.22658 1.03835 0.91086 0.97457 0.91370 0.86809 0.87030 0.74759 0.92685 0.92285 0.91539 0.91025 0.94285 0.89349 0.84247 0.93746 0.87005 0.79027 0.72625 0.88790 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.95 13.97 21.65 0.30 -55.65 16 2 C 0.05 2.72 5.50 84.86 0.47 3.18 16 3 Si 0.91 45.33 27.74 68.60 1.90 47.23 16 4 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 7 C -0.53 -31.01 10.04 67.95 0.68 -30.32 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 9 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 10 C -0.11 -4.21 6.16 71.23 0.44 -3.77 16 11 C 0.53 18.33 7.84 87.66 0.69 19.02 16 12 O -0.56 -24.23 15.54 -3.05 -0.05 -24.28 16 13 N -0.70 -16.33 4.94 -438.78 -2.17 -18.50 16 14 C 0.14 2.82 3.23 45.78 0.15 2.96 16 15 H 0.07 1.74 7.61 -2.39 -0.02 1.73 16 16 C -0.13 -2.72 6.59 31.32 0.21 -2.51 16 17 C -0.11 -1.60 5.61 31.67 0.18 -1.43 16 18 C -0.08 -0.92 3.12 -9.50 -0.03 -0.95 16 19 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 20 C 0.07 0.67 5.17 86.30 0.45 1.12 16 21 N -0.69 -8.17 6.49 -517.95 -3.36 -11.53 16 22 C 0.14 1.53 6.27 85.56 0.54 2.06 16 23 C 0.01 0.08 6.84 43.58 0.30 0.37 16 24 C -0.23 -2.11 11.12 22.40 0.25 -1.86 16 25 C -0.05 -0.34 12.30 67.17 0.83 0.48 16 26 O 0.08 1.20 11.20 71.69 0.80 2.00 16 27 N -0.40 -7.28 12.07 -49.55 -0.60 -7.88 16 28 C -0.11 -1.35 5.89 31.74 0.19 -1.16 16 29 H 0.28 15.63 8.31 -92.71 -0.77 14.85 16 30 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 31 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 32 H 0.42 7.00 8.55 -92.71 -0.79 6.21 16 33 H 0.05 1.31 7.92 -2.39 -0.02 1.29 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 0.98 8.03 -2.39 -0.02 0.96 16 36 H 0.07 0.93 7.97 -2.39 -0.02 0.91 16 37 H 0.04 0.35 8.05 -2.39 -0.02 0.33 16 38 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.34 4.73 7.97 -89.69 -0.71 4.02 16 40 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 42 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.26 -0.78 8.06 -2.91 -0.02 -0.80 16 44 H 0.09 0.94 8.05 -2.39 -0.02 0.92 16 45 H 0.09 0.92 7.97 -2.39 -0.02 0.90 16 Total: -1.00 -78.49 388.69 0.57 -77.92 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -0.53 Total: 13.56 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 5.32 Total: -12.80 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -5.83 Total: -93.56 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.76 Total: -22.28 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -78.49 0.57 -77.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332236902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.445 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds