Wall clock time and date at job start Tue Mar 31 2020 22:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 299.99438 * 3 2 1 6 6 H 1.48496 * 109.47496 * 59.99848 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09000 * 110.01907 * 33.33167 * 14 13 11 16 16 C 1.54269 * 110.03103 * 271.88580 * 14 13 11 17 17 C 1.54882 * 104.19543 * 217.10663 * 16 14 13 18 18 C 1.54892 * 102.74961 * 37.94458 * 17 16 14 19 19 H 1.09001 * 110.48514 * 80.73996 * 18 17 16 20 20 C 1.53002 * 110.59738 * 203.32074 * 18 17 16 21 21 N 1.46899 * 109.47072 * 289.84070 * 20 18 17 22 22 C 1.46902 * 110.99504 * 179.97438 * 21 20 18 23 23 C 1.50702 * 109.47047 * 180.02562 * 22 21 20 24 24 C 1.41379 * 126.80778 * 94.70914 * 23 22 21 25 25 C 1.35445 * 103.98852 * 179.89108 * 24 23 22 26 26 O 1.34042 * 106.44691 * 0.36960 * 25 24 23 27 27 N 1.20924 * 111.56705 * 359.74945 * 26 25 24 28 28 C 1.53876 * 110.03388 * 154.72379 * 14 13 11 29 29 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 31 31 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.08997 * 110.48606 * 335.79133 * 16 14 13 34 34 H 1.09004 * 110.48130 * 98.42846 * 16 14 13 35 35 H 1.09004 * 110.75978 * 279.62431 * 17 16 14 36 36 H 1.09003 * 110.91199 * 156.33036 * 17 16 14 37 37 H 1.09002 * 109.47008 * 49.84223 * 20 18 17 38 38 H 1.09000 * 109.47168 * 169.83615 * 20 18 17 39 39 H 1.00899 * 111.00119 * 56.05214 * 21 20 18 40 40 H 1.09003 * 109.47366 * 299.99959 * 22 21 20 41 41 H 1.08999 * 109.47301 * 60.00472 * 22 21 20 42 42 H 1.08009 * 128.00279 * 0.02562 * 24 23 22 43 43 H 1.08005 * 126.77354 * 180.09416 * 25 24 23 44 44 H 1.09000 * 110.03305 * 238.57213 * 28 14 13 45 45 H 1.09000 * 110.02869 * 359.94632 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 1 1.4006 -7.7630 -0.5702 16 6 2.0950 -8.1969 1.4427 17 6 2.5045 -9.6904 1.4170 18 6 3.7335 -9.6917 0.4743 19 1 4.6275 -9.3770 1.0126 20 6 3.9398 -11.0780 -0.1393 21 7 4.3982 -12.0100 0.8996 22 6 4.6067 -13.3545 0.3457 23 6 5.0750 -14.2808 1.4383 24 6 4.2706 -15.1348 2.2273 25 6 5.1542 -15.7494 3.0496 26 8 6.3635 -15.2605 2.7406 27 7 6.2997 -14.4489 1.8465 28 6 3.3724 -8.6655 -0.6194 29 1 -0.4849 0.8400 -0.0004 30 1 3.1246 -3.7313 0.8905 31 1 3.1246 -3.7313 -0.8894 32 1 3.8011 -6.1834 0.0015 33 1 2.7244 -7.6406 2.1374 34 1 1.0440 -8.0941 1.7126 35 1 1.7023 -10.3039 1.0068 36 1 2.7815 -10.0351 2.4133 37 1 2.9982 -11.4342 -0.5571 38 1 4.6882 -11.0179 -0.9295 39 1 3.7520 -12.0346 1.6740 40 1 3.6695 -13.7263 -0.0685 41 1 5.3596 -13.3106 -0.4413 42 1 3.1997 -15.2681 2.1829 43 1 4.9283 -16.4845 3.8079 44 1 2.9477 -9.1753 -1.4842 45 1 4.2598 -8.1059 -0.9150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332236904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:05 Heat of formation + Delta-G solvation = 13.265290 kcal Electronic energy + Delta-G solvation = -25288.198346 eV Core-core repulsion = 21434.616657 eV Total energy + Delta-G solvation = -3853.581688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.38254 -39.81325 -38.31609 -36.66944 -34.40685 -33.17956 -32.42057 -32.09861 -30.16471 -29.40466 -27.93213 -26.16800 -25.43666 -23.74875 -23.44575 -21.60221 -20.90567 -20.33344 -20.08303 -18.26019 -17.98265 -17.82095 -16.81728 -16.36714 -16.24362 -15.43597 -15.24930 -15.04280 -14.79909 -14.76604 -14.26370 -14.09588 -13.81197 -13.72644 -13.49425 -13.10678 -12.83546 -12.65085 -12.56081 -12.32505 -11.81074 -11.70823 -11.51012 -11.30470 -11.06584 -11.01254 -10.96613 -10.85176 -10.80309 -10.74625 -10.62625 -10.11803 -9.79363 -9.35201 -9.07000 -8.97758 -8.83086 -8.22048 -6.48921 -6.21190 -3.91404 1.05211 1.70729 2.80757 3.06558 3.11800 3.22053 3.29076 3.34231 3.56081 3.73861 3.80502 4.12224 4.21140 4.28258 4.41177 4.53338 4.63952 4.74739 4.81116 4.96837 5.10041 5.13764 5.14163 5.18133 5.20614 5.21438 5.27920 5.35194 5.38346 5.47703 5.50180 5.57387 5.66126 5.70649 5.82840 5.90909 6.07652 6.10721 6.15700 6.19028 6.43954 6.74557 6.82461 7.60693 7.75929 7.82869 8.36217 8.65560 9.24400 10.86339 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036769 B = 0.001437 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.330341 B =19474.442587 C =19687.271231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.733 5.733 14 C 0.143 3.857 15 H 0.090 0.910 16 C -0.134 4.134 17 C -0.121 4.121 18 C -0.090 4.090 19 H 0.086 0.914 20 C 0.067 3.933 21 N -0.683 5.683 22 C 0.136 3.864 23 C 0.016 3.984 24 C -0.233 4.233 25 C -0.059 4.059 26 O 0.101 5.899 27 N -0.346 5.346 28 C -0.124 4.124 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.344 0.656 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.171 0.829 43 H 0.217 0.783 44 H 0.074 0.926 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.992 -32.669 3.242 34.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.038 3.962 15 H 0.108 0.892 16 C -0.173 4.173 17 C -0.159 4.159 18 C -0.109 4.109 19 H 0.105 0.895 20 C -0.061 4.061 21 N -0.316 5.316 22 C 0.007 3.993 23 C -0.144 4.144 24 C -0.255 4.255 25 C -0.141 4.141 26 O 0.033 5.967 27 N -0.048 5.048 28 C -0.163 4.163 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.163 0.837 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.188 0.812 43 H 0.233 0.767 44 H 0.093 0.907 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.666 -32.176 2.789 33.712 hybrid contribution 0.560 0.777 0.064 0.960 sum 10.226 -31.398 2.853 33.145 Atomic orbital electron populations 1.70028 1.05952 1.27325 1.47014 1.24992 0.95019 0.99023 0.94546 0.86119 0.79600 0.81894 0.77895 1.19618 1.20572 1.20564 1.22918 0.94953 0.91675 1.58769 0.90887 1.85383 1.05025 0.96343 1.96706 1.23540 1.06512 0.95533 1.04876 1.20321 0.86606 0.86345 0.74938 1.90691 1.15391 1.85611 1.47587 1.46200 1.09725 1.05264 1.77556 1.21512 0.97622 0.80843 0.96225 0.89184 1.22777 1.02331 0.95157 0.96989 1.22564 0.96978 0.96843 0.99487 1.22001 0.99083 0.93429 0.96339 0.89517 1.22049 0.98691 0.91635 0.93766 1.60416 1.53546 1.06584 1.11018 1.20161 1.00244 0.86365 0.92542 1.23509 0.89173 1.00569 1.01146 1.22787 1.02268 1.01038 0.99407 1.26051 0.83942 1.01745 1.02318 1.84884 1.31051 1.41357 1.39406 1.73899 1.21665 1.06746 1.02506 1.22444 0.99080 0.96635 0.98144 0.92253 0.89278 0.89284 0.76859 0.90997 0.90959 0.91579 0.91345 0.94623 0.90641 0.83725 0.92721 0.89150 0.81190 0.76688 0.90750 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 9.91 7.85 -10.98 -0.09 9.82 16 12 O -0.52 -11.74 15.51 5.55 0.09 -11.66 16 13 N -0.73 -9.71 5.03 -52.72 -0.27 -9.97 16 14 C 0.14 1.64 3.25 -66.81 -0.22 1.42 16 15 H 0.09 1.22 7.56 -51.93 -0.39 0.83 16 16 C -0.13 -1.44 6.53 -25.07 -0.16 -1.60 16 17 C -0.12 -0.93 5.70 -24.74 -0.14 -1.07 16 18 C -0.09 -0.65 3.08 -88.96 -0.27 -0.92 16 19 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 20 C 0.07 0.43 5.03 -3.82 -0.02 0.41 16 21 N -0.68 -4.75 6.49 -115.05 -0.75 -5.50 16 22 C 0.14 0.87 6.27 -4.97 -0.03 0.84 16 23 C 0.02 0.12 6.84 -82.10 -0.56 -0.44 16 24 C -0.23 -1.17 11.12 -39.38 -0.44 -1.61 16 25 C -0.06 -0.25 12.30 29.74 0.37 0.12 16 26 O 0.10 0.78 11.20 17.17 0.19 0.97 16 27 N -0.35 -3.33 12.07 33.43 0.40 -2.92 16 28 C -0.12 -1.01 6.14 -25.62 -0.16 -1.17 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 32 H 0.40 4.16 8.32 -40.82 -0.34 3.82 16 33 H 0.07 0.81 8.05 -51.93 -0.42 0.40 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.48 7.97 -51.93 -0.41 0.06 16 36 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 37 H 0.04 0.21 8.03 -51.93 -0.42 -0.21 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.34 2.21 8.01 -39.29 -0.31 1.90 16 40 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.17 0.44 8.06 -52.48 -0.42 0.02 16 43 H 0.22 -0.04 8.06 -52.48 -0.42 -0.46 16 44 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 45 H 0.07 0.57 7.62 -51.93 -0.40 0.17 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -36.17 390.90 -9.11 -45.29 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.87 Total: 0.98 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.30 Total: -10.14 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.12 Total: -43.93 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.28 Total: -10.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.17 -9.11 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332236904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.551 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds