Wall clock time and date at job start Tue Mar 31 2020 23:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34659 * 125.80072 * 2 1 4 4 H 0.96993 * 124.85227 * 0.02562 * 3 2 1 5 5 C 1.36446 * 110.29349 * 180.27419 * 3 2 1 6 6 C 1.34493 * 108.85916 * 359.76381 * 5 3 2 7 7 C 1.36766 * 125.79720 * 179.87090 * 2 1 3 8 8 C 1.47263 * 126.94376 * 0.02562 * 7 2 1 9 9 O 1.21625 * 120.00243 * 323.99564 * 8 7 2 10 10 N 1.34776 * 119.99785 * 143.72662 * 8 7 2 11 11 C 1.46500 * 120.00269 * 4.79331 * 10 8 7 12 12 C 1.46499 * 119.99851 * 184.80114 * 10 8 7 13 13 C 1.52997 * 109.47445 * 89.99514 * 12 10 8 14 14 H 1.09003 * 109.47026 * 65.00485 * 13 12 10 15 15 C 1.53000 * 109.47032 * 184.99969 * 13 12 10 16 16 N 1.46498 * 109.47125 * 304.99778 * 13 12 10 17 17 C 1.34781 * 119.99770 * 154.99775 * 16 13 12 18 18 O 1.21278 * 119.99859 * 0.02562 * 17 16 13 19 19 C 1.50700 * 119.99816 * 180.02562 * 17 16 13 20 20 S 1.80996 * 109.47173 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00096 * 180.02562 * 20 19 17 22 22 H 1.07990 * 120.00117 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99868 * 179.97438 * 21 20 19 24 24 N 1.31637 * 120.00108 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99838 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.46913 * 90.00357 * 25 23 21 27 27 H 1.48505 * 109.47161 * 210.00148 * 25 23 21 28 28 H 1.48496 * 109.47019 * 330.00426 * 25 23 21 29 29 H 1.08994 * 109.47240 * 270.12626 * 1 2 3 30 30 H 1.09008 * 109.46586 * 30.12486 * 1 2 3 31 31 H 1.09003 * 109.46973 * 150.11939 * 1 2 3 32 32 H 1.08003 * 125.57027 * 179.79646 * 5 3 2 33 33 H 1.07998 * 126.83269 * 179.97438 * 6 5 3 34 34 H 1.09004 * 109.46905 * 84.87090 * 11 10 8 35 35 H 1.09006 * 109.47223 * 204.86779 * 11 10 8 36 36 H 1.08996 * 109.47283 * 324.87203 * 11 10 8 37 37 H 1.09003 * 109.47122 * 209.99667 * 12 10 8 38 38 H 1.09000 * 109.46924 * 329.99092 * 12 10 8 39 39 H 1.09001 * 109.47464 * 299.99608 * 15 13 12 40 40 H 1.08997 * 109.47325 * 59.99936 * 15 13 12 41 41 H 1.09001 * 109.47291 * 179.97438 * 15 13 12 42 42 H 0.96993 * 120.00250 * 335.00689 * 16 13 12 43 43 H 1.08994 * 109.47280 * 300.00418 * 19 17 16 44 44 H 1.09007 * 109.46795 * 60.00293 * 19 17 16 45 45 H 0.97003 * 119.99516 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0073 0.0004 5 6 3.6095 0.7274 -0.0061 6 6 3.6882 -0.6153 -0.0049 7 6 2.3070 -1.1093 0.0025 8 6 1.8701 -2.5156 0.0051 9 8 0.8757 -2.8424 0.6246 10 7 2.5691 -3.4397 -0.6833 11 6 3.8205 -3.0667 -1.3475 12 6 2.0773 -4.8171 -0.7677 13 6 1.1718 -4.9613 -1.9925 14 1 1.7588 -4.8087 -2.8982 15 6 0.5595 -6.3633 -2.0117 16 7 0.1023 -3.9621 -1.9294 17 6 -0.4971 -3.5442 -3.0620 18 8 -0.1513 -3.9957 -4.1332 19 6 -1.5969 -2.5160 -2.9972 20 16 -2.1940 -2.1650 -4.6694 21 6 -3.4352 -0.9683 -4.3062 22 1 -3.6182 -0.6734 -3.2836 23 6 -4.1771 -0.4039 -5.3346 24 7 -3.9537 -0.7630 -6.5812 25 14 -5.4925 0.8654 -4.9496 26 1 -4.8917 2.2232 -4.9718 27 1 -6.5712 0.7846 -5.9671 28 1 -6.0602 0.5973 -3.6039 29 1 -0.3633 0.0023 1.0276 30 1 -0.3633 0.8890 -0.5158 31 1 -0.3633 -0.8911 -0.5120 32 1 4.4498 1.4059 -0.0106 33 1 4.5890 -1.2110 -0.0091 34 1 4.6422 -3.1258 -0.6337 35 1 4.0094 -3.7490 -2.1763 36 1 3.7411 -2.0479 -1.7265 37 1 2.9223 -5.4997 -0.8582 38 1 1.5116 -5.0567 0.1327 39 1 1.3552 -7.1068 -2.0587 40 1 -0.0274 -6.5159 -1.1060 41 1 -0.0860 -6.4659 -2.8841 42 1 -0.1744 -3.6012 -1.0727 43 1 -2.4175 -2.8994 -2.3909 44 1 -1.2117 -1.5998 -2.5495 45 1 -4.4725 -0.3687 -7.2998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337107832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:41 Heat of formation + Delta-G solvation = -54.799140 kcal Electronic energy + Delta-G solvation = -27882.321156 eV Core-core repulsion = 24025.787973 eV Total energy + Delta-G solvation = -3856.533184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22411 -41.03267 -39.99532 -37.28021 -35.70736 -34.59541 -32.91167 -32.51781 -31.85176 -30.06565 -28.33906 -27.80275 -27.66844 -26.43207 -23.56540 -22.33069 -21.64306 -21.42012 -19.90753 -19.46087 -18.51612 -17.97946 -17.59391 -17.15617 -16.89181 -16.85341 -16.36179 -16.10329 -15.83919 -15.36464 -14.92037 -14.72681 -14.64551 -14.57230 -14.26244 -13.97215 -13.82719 -13.74301 -13.53704 -13.45843 -13.29050 -13.17395 -13.08650 -12.96250 -12.89972 -12.63487 -12.57120 -12.52172 -12.10182 -11.74380 -11.15288 -10.95911 -10.89453 -10.30916 -10.14595 -9.71628 -9.58359 -9.05603 -8.68066 -8.35567 -6.13750 0.85369 1.24798 1.40823 1.44698 1.56107 1.58529 1.60753 1.94661 2.25461 2.34062 2.40463 2.51378 2.98317 3.31140 3.77464 3.84486 3.91488 3.99154 4.13446 4.19237 4.25314 4.28284 4.37067 4.41189 4.43214 4.50638 4.63895 4.64937 4.69601 4.75177 4.85027 4.97813 4.99397 5.04409 5.05878 5.18801 5.25942 5.40448 5.49323 5.65610 5.85324 6.03332 6.18906 6.42875 6.49371 6.68121 7.05399 7.21316 7.28477 8.73790 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010271 B = 0.003816 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.382584 B = 7336.503554 C = 9259.691274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.083 3.917 3 N -0.544 5.544 4 H 0.429 0.571 5 C -0.006 4.006 6 C -0.183 4.183 7 C -0.263 4.263 8 C 0.589 3.411 9 O -0.582 6.582 10 N -0.609 5.609 11 C 0.074 3.926 12 C 0.112 3.888 13 C 0.122 3.878 14 H 0.074 0.926 15 C -0.155 4.155 16 N -0.710 5.710 17 C 0.534 3.466 18 O -0.562 6.562 19 C -0.128 4.128 20 S -0.138 6.138 21 C -0.548 4.548 22 H 0.079 0.921 23 C 0.017 3.983 24 N -0.910 5.910 25 Si 0.997 3.003 26 H -0.265 1.265 27 H -0.276 1.276 28 H -0.260 1.260 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.206 0.794 33 H 0.166 0.834 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.408 0.592 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.719 -0.072 18.099 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.036 4.036 3 N -0.140 5.140 4 H 0.268 0.732 5 C -0.134 4.134 6 C -0.206 4.206 7 C -0.273 4.273 8 C 0.380 3.620 9 O -0.463 6.463 10 N -0.340 5.340 11 C -0.068 4.068 12 C -0.011 4.011 13 C 0.017 3.983 14 H 0.092 0.908 15 C -0.214 4.214 16 N -0.366 5.366 17 C 0.319 3.681 18 O -0.440 6.440 19 C -0.280 4.280 20 S 0.090 5.910 21 C -0.695 4.695 22 H 0.097 0.903 23 C -0.188 4.188 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.184 1.184 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.223 0.777 33 H 0.183 0.817 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.247 0.753 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.783 -0.858 16.493 25.770 hybrid contribution -1.610 1.644 1.238 2.613 sum 18.173 0.786 17.730 25.401 Atomic orbital electron populations 1.20413 0.87648 1.03239 1.03537 1.20315 0.93737 0.86648 1.02862 1.41629 1.06352 1.08585 1.57423 0.73165 1.22378 0.86091 0.96696 1.08214 1.22391 0.94978 0.94353 1.08901 1.20213 0.95313 0.91435 1.20342 1.17772 0.81810 0.85113 0.77260 1.90676 1.28212 1.81914 1.45544 1.47682 1.24935 1.09594 1.51814 1.22195 0.84378 1.02350 0.97886 1.21921 0.99037 0.82959 0.97140 1.21598 0.88202 0.88490 1.00043 0.90816 1.22075 1.02102 0.95413 1.01820 1.46170 1.37976 1.43677 1.08792 1.19987 0.82267 0.81595 0.84208 1.90653 1.64852 1.58315 1.30200 1.23352 0.99922 1.00896 1.03801 1.85461 1.46008 1.54576 1.05004 1.23180 1.22564 1.27266 0.96522 0.90279 1.26098 0.99632 0.99098 0.94005 1.70183 1.41126 1.43181 1.00184 0.84976 0.76936 0.77671 0.78544 1.19045 1.20132 1.18408 0.89558 0.90268 0.92050 0.77697 0.81652 0.90024 0.90159 0.91033 0.85121 0.89475 0.88387 0.91550 0.94566 0.75333 0.88345 0.88496 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.16 9.83 71.24 0.70 -1.46 16 2 C 0.08 1.91 7.17 41.78 0.30 2.21 16 3 N -0.54 -8.53 5.90 -182.71 -1.08 -9.61 16 4 H 0.43 4.22 8.96 -92.71 -0.83 3.39 16 5 C -0.01 -0.08 11.89 83.12 0.99 0.91 16 6 C -0.18 -3.08 8.74 23.62 0.21 -2.87 16 7 C -0.26 -6.33 5.51 -19.04 -0.10 -6.44 16 8 C 0.59 15.62 6.53 86.62 0.57 16.18 16 9 O -0.58 -18.30 13.72 -4.11 -0.06 -18.36 16 10 N -0.61 -12.70 2.77 -850.85 -2.36 -15.06 16 11 C 0.07 1.09 9.03 127.77 1.15 2.24 16 12 C 0.11 2.07 5.13 86.38 0.44 2.51 16 13 C 0.12 3.05 2.88 44.99 0.13 3.18 16 14 H 0.07 2.08 7.58 -2.39 -0.02 2.06 16 15 C -0.16 -3.45 9.48 71.98 0.68 -2.77 16 16 N -0.71 -22.80 4.48 -442.53 -1.98 -24.79 16 17 C 0.53 22.23 7.81 87.66 0.68 22.91 16 18 O -0.56 -27.44 15.52 -3.02 -0.05 -27.49 16 19 C -0.13 -5.73 6.16 71.24 0.44 -5.29 16 20 S -0.14 -7.94 20.57 -56.49 -1.16 -9.10 16 21 C -0.55 -32.11 9.50 67.95 0.65 -31.47 16 22 H 0.08 4.36 7.80 -2.92 -0.02 4.34 16 23 C 0.02 0.95 5.49 84.86 0.47 1.42 16 24 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 25 Si 1.00 44.10 29.55 68.60 2.03 46.12 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.06 1.77 7.24 -2.39 -0.02 1.75 16 32 H 0.21 1.04 8.06 -2.91 -0.02 1.01 16 33 H 0.17 1.94 6.41 -2.91 -0.02 1.93 16 34 H 0.08 0.77 7.38 -2.38 -0.02 0.75 16 35 H 0.08 1.01 8.03 -2.38 -0.02 0.99 16 36 H 0.07 1.23 5.79 -2.39 -0.01 1.22 16 37 H 0.13 1.39 8.07 -2.39 -0.02 1.37 16 38 H 0.09 1.73 7.36 -2.39 -0.02 1.72 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.41 12.90 6.02 -92.71 -0.56 12.34 16 43 H 0.10 4.14 8.14 -2.40 -0.02 4.12 16 44 H 0.10 4.05 7.83 -2.39 -0.02 4.03 16 45 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -84.34 385.92 2.56 -81.78 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.36 Total: 31.40 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 7.30 Total: 1.28 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -5.14 Total: -105.63 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -0.10 Total: -45.85 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -84.34 2.56 -81.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337107832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.978 kcal (2) G-P(sol) polarization free energy of solvation -84.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds