Wall clock time and date at job start Tue Mar 31 2020 22:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48503 * 109.47010 * 239.99935 * 3 2 1 5 5 H 1.48499 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46923 * 120.00414 * 3 2 1 7 7 C 1.37884 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47402 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47293 * 179.97438 * 11 10 9 13 13 O 1.42105 * 110.54189 * 68.37430 * 12 11 10 14 14 O 1.42099 * 110.54203 * 291.62169 * 12 11 10 15 15 N 1.65608 * 104.44917 * 179.97438 * 12 11 10 16 16 C 1.46923 * 120.62912 * 89.99778 * 15 12 11 17 17 C 1.53190 * 108.77809 * 233.58654 * 16 15 12 18 18 C 1.53036 * 109.31273 * 305.36826 * 17 16 15 19 19 C 1.53041 * 109.53807 * 61.36337 * 18 17 16 20 20 H 1.08990 * 109.49710 * 58.58886 * 19 18 17 21 21 C 1.50703 * 109.49376 * 178.65150 * 19 18 17 22 22 N 1.31796 * 119.12105 * 59.73495 * 21 19 18 23 23 C 1.32341 * 120.81405 * 179.76116 * 22 21 19 24 24 C 1.38596 * 119.10359 * 0.49425 * 23 22 21 25 25 C 1.38602 * 118.40275 * 359.75693 * 24 23 22 26 26 N 1.31796 * 119.12056 * 239.99759 * 21 19 18 27 27 C 1.46927 * 120.63047 * 269.72011 * 15 12 11 28 28 H 0.97003 * 119.99921 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47291 * 60.00239 * 9 7 2 30 30 H 1.09001 * 109.47238 * 300.00056 * 9 7 2 31 31 H 1.09001 * 109.47713 * 59.99658 * 10 9 7 32 32 H 1.09001 * 109.46817 * 299.99882 * 10 9 7 33 33 H 1.09001 * 109.47069 * 59.99138 * 11 10 9 34 34 H 1.09001 * 109.46935 * 299.99683 * 11 10 9 35 35 H 1.09007 * 109.58781 * 353.37587 * 16 15 12 36 36 H 1.08998 * 109.58580 * 113.65404 * 16 15 12 37 37 H 1.09001 * 109.49704 * 65.32018 * 17 16 15 38 38 H 1.09002 * 109.49744 * 185.41599 * 17 16 15 39 39 H 1.09000 * 109.46265 * 181.38787 * 18 17 16 40 40 H 1.09010 * 109.46030 * 301.34357 * 18 17 16 41 41 H 1.07999 * 120.44823 * 180.23061 * 23 22 21 42 42 H 1.08001 * 120.79797 * 179.77509 * 24 23 22 43 43 H 1.07995 * 120.44970 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.58645 * 246.19941 * 27 15 12 45 45 H 1.09001 * 109.58579 * 6.63098 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6590 -6.3659 -0.0019 13 8 3.3559 -6.4268 1.2350 14 8 3.3557 -6.4256 -1.2390 15 7 1.7086 -7.7221 -0.0019 16 6 1.2785 -8.3348 -1.2661 17 6 -0.2467 -8.4774 -1.2512 18 6 -0.6704 -9.2519 -0.0012 19 6 -0.2453 -8.4782 1.2490 20 1 -0.7031 -7.4892 1.2378 21 6 -0.6922 -9.2254 2.4790 22 7 -0.2517 -10.4512 2.6803 23 6 -0.6188 -11.1362 3.7514 24 6 -1.4857 -10.5514 4.6612 25 6 -1.9313 -9.2628 4.4126 26 7 -1.5172 -8.6376 3.3222 27 6 1.2846 -8.3390 1.2624 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6044 0.8894 32 1 2.8719 -3.6043 -0.8906 33 1 0.8538 -5.0445 -0.8913 34 1 0.8534 -5.0451 0.8886 35 1 1.5781 -7.7002 -2.1003 36 1 1.7385 -9.3174 -1.3710 37 1 -0.7044 -7.4882 -1.2389 38 1 -0.5703 -9.0175 -2.1410 39 1 -1.7533 -9.3762 -0.0006 40 1 -0.1926 -10.2318 -0.0017 41 1 -0.2513 -12.1389 3.9124 42 1 -1.8059 -11.0869 5.5427 43 1 -2.6071 -8.7753 5.0996 44 1 1.7430 -9.3230 1.3607 45 1 1.5880 -7.7071 2.0971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350082279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:13 Heat of formation + Delta-G solvation = -38.804530 kcal Electronic energy + Delta-G solvation = -27376.351559 eV Core-core repulsion = 23520.511953 eV Total energy + Delta-G solvation = -3855.839605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45169 -38.64883 -36.95227 -35.73505 -34.63970 -34.03859 -33.82775 -32.20151 -32.14109 -30.46327 -27.78051 -25.22633 -24.87953 -24.68198 -23.64980 -22.51512 -20.85764 -20.18127 -18.80073 -17.81277 -17.70647 -17.14387 -16.59201 -16.18276 -15.74097 -15.63452 -15.28888 -14.82670 -14.68566 -14.48168 -14.33472 -14.17785 -13.86596 -13.70496 -13.65016 -12.83344 -12.57194 -12.27715 -11.97825 -11.92217 -11.83331 -11.74992 -11.63486 -11.35892 -11.30105 -11.19773 -11.10048 -10.89760 -10.87911 -10.84358 -10.76792 -10.39633 -9.92055 -9.88849 -9.55473 -9.44800 -9.21192 -8.89844 -8.38318 -6.03445 -4.06492 0.43192 0.54669 0.75530 2.70573 3.33587 3.37302 3.40260 3.40637 3.52190 3.80563 4.03087 4.24515 4.31571 4.41758 4.45243 4.58843 4.64531 4.71219 4.73602 4.88552 4.93903 5.08260 5.19484 5.21759 5.26502 5.30043 5.32848 5.40520 5.57010 5.64710 5.66455 5.79923 5.82864 5.91499 6.00345 6.03613 6.15697 6.28024 6.47478 6.48228 6.67082 6.90032 7.59521 7.69926 7.77508 7.94580 8.35235 8.99527 9.57954 11.07713 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.002797 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.754901 B =10009.546100 C =11114.063396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.596 3.404 13 O -0.960 6.960 14 O -0.958 6.958 15 N -1.002 6.002 16 C 0.120 3.880 17 C -0.136 4.136 18 C -0.102 4.102 19 C -0.039 4.039 20 H 0.105 0.895 21 C 0.329 3.671 22 N -0.511 5.511 23 C 0.149 3.851 24 C -0.235 4.235 25 C 0.151 3.849 26 N -0.513 5.513 27 C 0.136 3.864 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.168 0.832 42 H 0.147 0.853 43 H 0.169 0.831 44 H 0.083 0.917 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 -25.928 5.026 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.694 3.306 13 O -0.950 6.950 14 O -0.949 6.949 15 N -0.838 5.838 16 C -0.005 4.005 17 C -0.175 4.175 18 C -0.140 4.140 19 C -0.061 4.061 20 H 0.123 0.877 21 C 0.061 3.939 22 N -0.225 5.225 23 C -0.017 4.017 24 C -0.257 4.257 25 C -0.015 4.015 26 N -0.226 5.226 27 C 0.010 3.990 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.185 0.815 42 H 0.165 0.835 43 H 0.186 0.814 44 H 0.102 0.898 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.394 -25.356 4.208 26.076 hybrid contribution -0.795 0.608 1.051 1.452 sum -5.189 -24.748 5.260 25.827 Atomic orbital electron populations 1.69950 1.06075 1.26858 1.50538 1.25017 0.94883 0.99327 0.95117 0.86622 0.79578 0.82863 0.78761 1.20112 1.21252 1.20134 1.21223 0.93210 0.90931 1.51141 0.92445 1.19049 0.93503 0.90381 0.97735 1.21501 0.99382 0.91748 1.01871 1.30608 1.16390 1.15824 1.11250 1.05541 0.75959 0.74943 0.74188 1.93561 1.70346 1.85819 1.45294 1.93560 1.70253 1.85838 1.45202 1.57898 1.70483 1.44089 1.11322 1.21441 0.94417 0.99762 0.84929 1.21961 0.95976 1.01604 0.97965 1.21448 1.00952 0.99237 0.92394 1.20549 0.97048 0.99358 0.89176 0.87672 1.23027 0.88785 0.87809 0.94313 1.68223 1.24646 1.08361 1.21288 1.23266 0.90865 0.99465 0.88132 1.22933 1.01609 0.98316 1.02873 1.23307 0.94217 0.91284 0.92727 1.68322 1.12242 1.38019 1.04004 1.21388 0.91862 1.00385 0.85394 0.92855 0.96111 0.96117 0.91663 0.91632 0.85389 0.85434 0.88790 0.90902 0.90835 0.90189 0.91826 0.90505 0.81457 0.83498 0.81361 0.89839 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.81 4.97 -27.89 -0.14 0.67 16 10 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 11 C -0.61 -9.66 6.18 37.16 0.23 -9.43 16 12 S 2.60 40.04 5.41 -107.50 -0.58 39.46 16 13 O -0.96 -17.47 16.71 -57.54 -0.96 -18.43 16 14 O -0.96 -17.00 16.73 -57.54 -0.96 -17.97 16 15 N -1.00 -12.01 3.21 -113.27 -0.36 -12.37 16 16 C 0.12 1.17 6.31 -3.71 -0.02 1.14 16 17 C -0.14 -1.10 6.08 -26.61 -0.16 -1.26 16 18 C -0.10 -0.88 5.04 -26.69 -0.13 -1.02 16 19 C -0.04 -0.41 2.69 -91.42 -0.25 -0.65 16 20 H 0.11 1.13 8.10 -51.93 -0.42 0.71 16 21 C 0.33 3.57 6.35 -157.19 -1.00 2.57 16 22 N -0.51 -5.04 9.75 -10.72 -0.10 -5.15 16 23 C 0.15 1.05 11.31 -17.20 -0.19 0.86 16 24 C -0.24 -1.41 10.17 -39.31 -0.40 -1.81 16 25 C 0.15 1.18 11.31 -17.20 -0.19 0.99 16 26 N -0.51 -5.67 10.31 -10.72 -0.11 -5.78 16 27 C 0.14 1.56 5.56 -3.48 -0.02 1.54 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 34 H 0.13 1.85 8.14 -51.92 -0.42 1.43 16 35 H 0.09 0.93 7.10 -51.93 -0.37 0.56 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.66 8.04 -51.92 -0.42 0.25 16 41 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 43 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 45 H 0.09 1.12 7.09 -51.93 -0.37 0.75 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -36.59 381.85 -11.47 -48.06 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -7.02 Total: -1.81 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.83 Total: -22.46 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.16 Total: -49.34 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.92 Total: -36.40 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 40.04 SS G_CDS: -0.58 Total: 39.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.59 -11.47 -48.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350082279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.251 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds