Wall clock time and date at job start Tue Mar 31 2020 23:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46936 * 259.76356 * 3 2 1 5 5 C 1.35900 * 116.99929 * 180.02562 * 4 3 2 6 6 C 1.38808 * 120.01862 * 0.02562 * 5 4 3 7 7 C 1.38172 * 120.08704 * 179.97438 * 6 5 4 8 8 C 1.38162 * 120.12834 * 359.74611 * 7 6 5 9 9 C 1.38906 * 120.03061 * 0.50697 * 8 7 6 10 10 N 1.39867 * 120.03723 * 179.77188 * 9 8 7 11 11 C 1.34775 * 119.99626 * 214.82483 * 10 9 8 12 12 O 1.21613 * 120.00192 * 355.37839 * 11 10 9 13 13 C 1.47408 * 120.00245 * 175.38265 * 11 10 9 14 14 C 1.41295 * 126.41326 * 0.02562 * 13 11 10 15 15 N 1.30450 * 108.02519 * 179.73609 * 14 13 11 16 16 N 1.39931 * 108.89845 * 0.38475 * 15 14 13 17 17 C 1.46496 * 125.75371 * 179.87599 * 16 15 14 18 18 C 1.50705 * 109.47258 * 269.68654 * 17 16 15 19 19 H 1.07999 * 119.99527 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00296 * 179.72130 * 18 17 16 21 21 N 1.31514 * 120.00085 * 0.28270 * 20 18 17 22 22 Si 1.86802 * 120.00120 * 180.27608 * 20 18 17 23 23 H 1.48508 * 109.46917 * 60.00246 * 22 20 18 24 24 H 1.48495 * 109.47453 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47314 * 300.00768 * 22 20 18 26 26 C 1.34265 * 108.49584 * 359.60639 * 16 15 14 27 27 C 1.50695 * 126.29861 * 180.24917 * 26 16 15 28 28 C 1.38575 * 120.01863 * 179.97438 * 5 4 3 29 29 H 4.38445 * 5.44469 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47010 * 139.76726 * 3 2 1 31 31 H 1.08998 * 109.47253 * 19.76347 * 3 2 1 32 32 H 1.08003 * 119.96162 * 359.95445 * 6 5 4 33 33 H 1.08000 * 119.93555 * 179.97438 * 7 6 5 34 34 H 1.07993 * 119.98623 * 180.27236 * 8 7 6 35 35 H 0.96994 * 120.00518 * 34.82209 * 10 9 8 36 36 H 1.07999 * 125.98770 * 359.97438 * 14 13 11 37 37 H 1.09000 * 109.47376 * 149.68771 * 17 16 15 38 38 H 1.09000 * 109.47581 * 29.69039 * 17 16 15 39 39 H 0.96997 * 120.00191 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.47278 * 89.99779 * 27 26 16 41 41 H 1.09005 * 109.47699 * 210.00328 * 27 26 16 42 42 H 1.09002 * 109.46998 * 330.00153 * 27 26 16 43 43 H 1.07997 * 120.06528 * 0.05401 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.2403 1.3259 5 6 4.4695 0.2731 1.5010 6 6 5.3155 0.0789 0.4178 7 6 6.6855 0.1125 0.5942 8 6 7.2179 0.3446 1.8479 9 6 6.3760 0.5343 2.9364 10 7 6.9148 0.7645 4.2064 11 6 6.2939 0.2792 5.2998 12 8 5.2226 -0.2858 5.1902 13 6 6.9134 0.4333 6.6285 14 6 8.1463 1.0629 6.9112 15 7 8.3451 1.0012 8.1990 16 7 7.2692 0.3314 8.7921 17 6 7.1167 0.0548 10.2226 18 6 7.7360 -1.2808 10.5449 19 1 8.1974 -1.8649 9.7624 20 6 7.7191 -1.7542 11.8397 21 7 7.1576 -1.0427 12.7927 22 14 8.4935 -3.4062 12.2405 23 1 9.9360 -3.3750 11.8887 24 1 8.3433 -3.6844 13.6914 25 1 7.8166 -4.4727 11.4597 26 6 6.3973 -0.0100 7.8299 27 6 5.0946 -0.7420 8.0251 28 6 4.9995 0.5014 2.7609 29 1 -1.0500 0.0002 -0.0001 30 1 3.0090 0.7854 -0.6638 31 1 3.0098 -0.9663 -0.3475 32 1 4.9025 -0.0989 -0.5641 33 1 7.3415 -0.0393 -0.2502 34 1 8.2890 0.3747 1.9823 35 1 7.7352 1.2732 4.3003 36 1 8.8064 1.5190 6.1883 37 1 6.0573 0.0351 10.4780 38 1 7.6148 0.8347 10.7987 39 1 7.1461 -1.3755 13.7037 40 1 4.2946 -0.0212 8.1943 41 1 4.8714 -1.3304 7.1351 42 1 5.1755 -1.4039 8.8874 43 1 4.3427 0.6526 3.6048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360163663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:05 Heat of formation + Delta-G solvation = 83.599647 kcal Electronic energy + Delta-G solvation = -27300.776491 eV Core-core repulsion = 23314.800778 eV Total energy + Delta-G solvation = -3985.975713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02630 -40.44209 -39.27292 -37.40899 -34.57338 -33.91030 -33.70081 -32.12773 -31.33801 -30.59368 -29.51834 -27.77452 -27.26121 -26.66098 -23.80544 -23.15482 -22.50109 -21.66543 -19.97836 -19.27221 -18.77471 -18.46429 -17.24678 -16.80010 -16.31152 -16.27931 -16.09899 -15.84749 -15.24217 -15.00514 -14.55242 -14.28970 -14.20853 -13.80895 -13.53281 -13.28116 -13.19472 -13.10365 -12.62562 -12.50915 -12.11879 -12.05691 -11.91642 -11.81079 -11.53572 -11.43396 -11.15674 -10.93425 -10.89956 -10.57703 -10.39170 -10.28609 -10.17143 -9.99123 -9.46104 -8.73113 -8.65311 -8.50603 -8.23675 -7.94598 -6.35868 -4.44244 1.13758 1.32279 1.94289 2.10642 2.38122 2.70979 2.98761 3.18868 3.23014 3.25437 3.33122 3.49254 3.57778 3.87192 4.03469 4.22436 4.58803 4.76024 4.87093 4.89811 4.95026 5.02488 5.06752 5.17901 5.22101 5.42115 5.43298 5.46432 5.69112 5.76724 5.87188 6.05982 6.10594 6.15500 6.30090 6.32782 6.47038 6.53468 6.72789 6.80230 6.86580 7.09111 7.12545 7.24585 7.50655 7.53073 7.72748 7.74414 8.29429 8.40917 8.60995 9.22956 10.72234 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016701 B = 0.002140 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.169998 B =13081.057241 C =13895.517604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.200 4.200 3 C 0.174 3.826 4 O -0.307 6.307 5 C 0.146 3.854 6 C -0.232 4.232 7 C -0.062 4.062 8 C -0.185 4.185 9 C 0.199 3.801 10 N -0.676 5.676 11 C 0.604 3.396 12 O -0.531 6.531 13 C -0.335 4.335 14 C 0.059 3.941 15 N -0.293 5.293 16 N -0.312 5.312 17 C 0.251 3.749 18 C -0.542 4.542 19 H 0.065 0.935 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.172 3.828 27 C -0.100 4.100 28 C -0.154 4.154 29 H 0.225 0.775 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.411 0.589 36 H 0.177 0.823 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.270 0.730 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 4.059 -25.239 26.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.200 4.200 3 C 0.099 3.901 4 O -0.221 6.221 5 C 0.100 3.900 6 C -0.252 4.252 7 C -0.080 4.080 8 C -0.206 4.206 9 C 0.104 3.896 10 N -0.320 5.320 11 C 0.396 3.604 12 O -0.408 6.408 13 C -0.351 4.351 14 C -0.128 4.128 15 N -0.112 5.112 16 N -0.088 5.088 17 C 0.134 3.866 18 C -0.581 4.581 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.526 5.526 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 C 0.034 3.966 27 C -0.158 4.158 28 C -0.175 4.175 29 H 0.241 0.759 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.248 0.752 36 H 0.194 0.806 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.553 3.969 -23.697 24.660 hybrid contribution 0.389 -0.828 -0.486 1.036 sum -5.165 3.141 -24.183 24.927 Atomic orbital electron populations 1.25029 0.95884 1.00174 0.96552 1.22300 0.93605 1.01216 1.02915 1.19251 0.84913 1.02110 0.83799 1.86136 1.19608 1.86902 1.29499 1.18694 0.81515 0.95994 0.93800 1.21150 0.94472 1.11437 0.98131 1.20644 0.94149 0.96667 0.96565 1.20846 0.99559 1.07762 0.92402 1.17374 0.91384 0.96226 0.84635 1.43344 1.28992 1.55793 1.03878 1.17446 0.83670 0.76458 0.82805 1.90721 1.21179 1.42896 1.86039 1.19523 1.01549 1.21603 0.92403 1.23742 0.95560 0.99475 0.94056 1.77156 1.09249 1.16850 1.07982 1.49410 1.12328 1.37607 1.09505 1.19881 0.99294 0.98481 0.68990 1.21206 1.39390 1.02748 0.94729 0.91675 1.24924 0.94866 0.98257 0.95576 1.69900 1.42939 1.38127 1.01635 0.86374 0.79933 0.82793 0.77392 1.19884 1.20853 1.19814 1.21490 0.93429 0.93913 0.87757 1.20648 0.90415 0.99912 1.04826 1.20504 0.94252 1.06662 0.96049 0.75870 0.89547 0.89511 0.85601 0.85459 0.85464 0.75238 0.80616 0.92471 0.92406 0.92009 0.90316 0.88546 0.89734 0.83178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 19.25 29.55 0.57 -0.69 16 2 C -0.20 -1.91 13.73 -37.12 -0.51 -2.42 16 3 C 0.17 1.49 5.21 34.37 0.18 1.67 16 4 O -0.31 -3.82 10.09 -19.43 -0.20 -4.02 16 5 C 0.15 1.78 6.68 -39.25 -0.26 1.52 16 6 C -0.23 -2.20 9.04 -39.39 -0.36 -2.55 16 7 C -0.06 -0.54 10.03 -39.63 -0.40 -0.94 16 8 C -0.18 -1.84 9.96 -39.36 -0.39 -2.23 16 9 C 0.20 2.51 6.30 -83.73 -0.53 1.98 16 10 N -0.68 -8.48 5.32 -10.85 -0.06 -8.53 16 11 C 0.60 9.84 7.66 -12.53 -0.10 9.74 16 12 O -0.53 -9.91 12.27 5.27 0.06 -9.84 16 13 C -0.34 -5.93 6.13 -105.07 -0.64 -6.58 16 14 C 0.06 0.98 11.51 -16.98 -0.20 0.79 16 15 N -0.29 -6.13 12.50 30.86 0.39 -5.74 16 16 N -0.31 -6.91 3.56 -57.77 -0.21 -7.11 16 17 C 0.25 6.15 5.78 -5.19 -0.03 6.12 16 18 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 19 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 21 N -0.89 -24.37 13.29 55.43 0.74 -23.64 16 22 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C 0.17 3.42 7.01 -81.60 -0.57 2.85 16 27 C -0.10 -1.78 9.34 36.00 0.34 -1.44 16 28 C -0.15 -2.16 8.63 -39.25 -0.34 -2.50 16 29 H 0.22 0.89 7.80 -54.09 -0.42 0.47 16 30 H 0.09 0.55 7.66 -51.93 -0.40 0.15 16 31 H 0.09 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.13 0.83 6.29 -52.48 -0.33 0.50 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.41 3.84 7.79 -40.82 -0.32 3.53 16 36 H 0.18 2.01 7.51 -52.49 -0.39 1.62 16 37 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 38 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.10 1.69 6.50 -51.93 -0.34 1.36 16 42 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 43 H 0.15 2.45 6.22 -52.49 -0.33 2.12 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -32.57 380.26 -7.17 -39.75 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -4.96 Total: 5.48 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -3.66 Total: -7.73 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.86 Total: -45.02 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.13 Total: -13.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.57 -7.17 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360163663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.347 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds