Wall clock time and date at job start Tue Mar 31 2020 23:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46936 * 259.76356 * 3 2 1 5 5 C 1.35900 * 116.99929 * 180.02562 * 4 3 2 6 6 C 1.38808 * 120.01862 * 0.02562 * 5 4 3 7 7 C 1.38172 * 120.08704 * 179.97438 * 6 5 4 8 8 C 1.38162 * 120.12834 * 359.74611 * 7 6 5 9 9 C 1.38906 * 120.03061 * 0.50697 * 8 7 6 10 10 N 1.39867 * 120.03723 * 179.77188 * 9 8 7 11 11 C 1.34775 * 119.99626 * 214.82483 * 10 9 8 12 12 O 1.21613 * 120.00192 * 355.37839 * 11 10 9 13 13 C 1.47408 * 120.00245 * 175.38265 * 11 10 9 14 14 C 1.41295 * 126.41326 * 0.02562 * 13 11 10 15 15 N 1.30450 * 108.02519 * 179.73609 * 14 13 11 16 16 N 1.39931 * 108.89845 * 0.38475 * 15 14 13 17 17 C 1.46496 * 125.75371 * 179.87599 * 16 15 14 18 18 C 1.50705 * 109.47258 * 269.68654 * 17 16 15 19 19 H 1.07999 * 119.99527 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00296 * 179.72130 * 18 17 16 21 21 N 1.31514 * 120.00085 * 0.28270 * 20 18 17 22 22 Si 1.86802 * 120.00120 * 180.27608 * 20 18 17 23 23 H 1.48508 * 109.46917 * 60.00246 * 22 20 18 24 24 H 1.48495 * 109.47453 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47314 * 300.00768 * 22 20 18 26 26 C 1.34265 * 108.49584 * 359.60639 * 16 15 14 27 27 C 1.50695 * 126.29861 * 180.24917 * 26 16 15 28 28 C 1.38575 * 120.01863 * 179.97438 * 5 4 3 29 29 H 4.38445 * 5.44469 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.47010 * 139.76726 * 3 2 1 31 31 H 1.08998 * 109.47253 * 19.76347 * 3 2 1 32 32 H 1.08003 * 119.96162 * 359.95445 * 6 5 4 33 33 H 1.08000 * 119.93555 * 179.97438 * 7 6 5 34 34 H 1.07993 * 119.98623 * 180.27236 * 8 7 6 35 35 H 0.96994 * 120.00518 * 34.82209 * 10 9 8 36 36 H 1.07999 * 125.98770 * 359.97438 * 14 13 11 37 37 H 1.09000 * 109.47376 * 149.68771 * 17 16 15 38 38 H 1.09000 * 109.47581 * 29.69039 * 17 16 15 39 39 H 0.96997 * 120.00191 * 180.02562 * 21 20 18 40 40 H 1.09003 * 109.47278 * 89.99779 * 27 26 16 41 41 H 1.09005 * 109.47699 * 210.00328 * 27 26 16 42 42 H 1.09002 * 109.46998 * 330.00153 * 27 26 16 43 43 H 1.07997 * 120.06528 * 0.05401 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.2403 1.3259 5 6 4.4695 0.2731 1.5010 6 6 5.3155 0.0789 0.4178 7 6 6.6855 0.1125 0.5942 8 6 7.2179 0.3446 1.8479 9 6 6.3760 0.5343 2.9364 10 7 6.9148 0.7645 4.2064 11 6 6.2939 0.2792 5.2998 12 8 5.2226 -0.2858 5.1902 13 6 6.9134 0.4333 6.6285 14 6 8.1463 1.0629 6.9112 15 7 8.3451 1.0012 8.1990 16 7 7.2692 0.3314 8.7921 17 6 7.1167 0.0548 10.2226 18 6 7.7360 -1.2808 10.5449 19 1 8.1974 -1.8649 9.7624 20 6 7.7191 -1.7542 11.8397 21 7 7.1576 -1.0427 12.7927 22 14 8.4935 -3.4062 12.2405 23 1 9.9360 -3.3750 11.8887 24 1 8.3433 -3.6844 13.6914 25 1 7.8166 -4.4727 11.4597 26 6 6.3973 -0.0100 7.8299 27 6 5.0946 -0.7420 8.0251 28 6 4.9995 0.5014 2.7609 29 1 -1.0500 0.0002 -0.0001 30 1 3.0090 0.7854 -0.6638 31 1 3.0098 -0.9663 -0.3475 32 1 4.9025 -0.0989 -0.5641 33 1 7.3415 -0.0393 -0.2502 34 1 8.2890 0.3747 1.9823 35 1 7.7352 1.2732 4.3003 36 1 8.8064 1.5190 6.1883 37 1 6.0573 0.0351 10.4780 38 1 7.6148 0.8347 10.7987 39 1 7.1461 -1.3755 13.7037 40 1 4.2946 -0.0212 8.1943 41 1 4.8714 -1.3304 7.1351 42 1 5.1755 -1.4039 8.8874 43 1 4.3427 0.6526 3.6048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360163663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:04 Heat of formation + Delta-G solvation = 63.468133 kcal Electronic energy + Delta-G solvation = -27301.649459 eV Core-core repulsion = 23314.800778 eV Total energy + Delta-G solvation = -3986.848681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.43106 -41.42921 -40.34570 -38.36114 -35.88551 -35.53543 -34.37410 -33.82981 -32.84357 -31.47632 -30.53801 -29.02959 -28.41045 -28.10222 -25.49135 -24.38393 -23.47921 -22.76038 -21.28744 -20.65722 -19.48093 -19.41478 -18.87829 -18.47175 -17.13969 -17.10237 -17.02423 -16.79087 -16.66788 -16.47117 -16.09706 -15.59498 -15.51736 -14.88901 -14.64676 -14.41583 -14.30542 -14.12863 -13.98485 -13.86302 -13.66620 -13.60334 -13.13241 -12.98203 -12.79999 -12.71532 -12.68098 -12.32991 -12.25510 -11.89442 -11.76507 -11.59977 -11.30493 -11.06825 -10.77190 -10.75482 -10.29337 -9.64671 -9.35397 -8.97612 -8.38768 -6.55384 0.21957 0.51003 0.71094 1.26450 1.29611 1.38032 1.38474 1.46931 1.60622 1.75127 2.16775 2.31980 2.41351 2.69711 2.89455 2.93374 3.43239 3.69900 3.71300 3.92456 4.03746 4.13380 4.18040 4.21448 4.31491 4.33358 4.46349 4.49513 4.62113 4.63559 4.77605 4.81677 4.88605 4.94382 5.06966 5.12441 5.33535 5.38726 5.42533 5.47739 5.54022 5.64174 5.73357 5.90693 6.00608 6.44465 6.48672 6.52759 6.53221 6.80743 7.15712 7.21272 8.68881 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016701 B = 0.002140 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.169998 B =13081.057241 C =13895.517604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.248 4.248 3 C 0.167 3.833 4 O -0.337 6.337 5 C 0.131 3.869 6 C -0.223 4.223 7 C -0.055 4.055 8 C -0.178 4.178 9 C 0.178 3.822 10 N -0.657 5.657 11 C 0.605 3.395 12 O -0.560 6.560 13 C -0.331 4.331 14 C 0.083 3.917 15 N -0.333 5.333 16 N -0.336 5.336 17 C 0.267 3.733 18 C -0.557 4.557 19 H 0.052 0.948 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.971 3.029 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.267 1.267 26 C 0.151 3.849 27 C -0.092 4.092 28 C -0.186 4.186 29 H 0.256 0.744 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.428 0.572 36 H 0.232 0.768 37 H 0.050 0.950 38 H 0.033 0.967 39 H 0.275 0.725 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 3.618 -28.659 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.248 4.248 3 C 0.094 3.906 4 O -0.252 6.252 5 C 0.085 3.915 6 C -0.242 4.242 7 C -0.073 4.073 8 C -0.198 4.198 9 C 0.083 3.917 10 N -0.303 5.303 11 C 0.396 3.604 12 O -0.439 6.439 13 C -0.347 4.347 14 C -0.104 4.104 15 N -0.153 5.153 16 N -0.113 5.113 17 C 0.148 3.852 18 C -0.595 4.595 19 H 0.071 0.929 20 C -0.178 4.178 21 N -0.554 5.554 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.192 1.192 26 C 0.014 3.986 27 C -0.150 4.150 28 C -0.207 4.207 29 H 0.272 0.728 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.175 0.825 33 H 0.185 0.815 34 H 0.173 0.827 35 H 0.267 0.733 36 H 0.248 0.752 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.261 3.552 -27.162 27.723 hybrid contribution -0.098 -0.628 0.352 0.726 sum -4.359 2.924 -26.810 27.319 Atomic orbital electron populations 1.25934 0.96860 0.98776 0.94831 1.22900 0.94693 1.02667 1.04503 1.19558 0.84743 1.03788 0.82557 1.86086 1.20033 1.87158 1.31962 1.18829 0.81943 0.96649 0.94043 1.21539 0.94673 1.09464 0.98506 1.21159 0.94286 0.94589 0.97246 1.21188 1.00623 1.06192 0.91798 1.17560 0.91219 0.97882 0.85047 1.43048 1.29025 1.55015 1.03174 1.17274 0.83372 0.76571 0.83155 1.90722 1.22430 1.44337 1.86457 1.19756 1.01761 1.20682 0.92453 1.24576 0.95232 0.97193 0.93389 1.77110 1.09742 1.18445 1.09958 1.49119 1.13702 1.39661 1.08827 1.19382 0.98202 0.96860 0.70736 1.21362 1.39704 1.03607 0.94799 0.92937 1.25734 0.95127 1.01621 0.95313 1.69986 1.43693 1.39666 1.02030 0.85409 0.78903 0.78639 0.77603 1.19719 1.19780 1.19228 1.21939 0.93825 0.94441 0.88364 1.20596 0.90336 0.99878 1.04171 1.20415 0.94899 1.09255 0.96113 0.72801 0.87333 0.87832 0.82471 0.81513 0.82660 0.73297 0.75198 0.93216 0.94871 0.91637 0.89032 0.88423 0.91023 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 19.25 74.32 1.43 -0.72 16 2 C -0.25 -4.58 13.73 31.13 0.43 -4.15 16 3 C 0.17 2.70 5.21 70.18 0.37 3.07 16 4 O -0.34 -8.50 10.09 -92.43 -0.93 -9.44 16 5 C 0.13 3.14 6.68 22.49 0.15 3.29 16 6 C -0.22 -3.53 9.04 22.39 0.20 -3.33 16 7 C -0.05 -0.72 10.03 22.24 0.22 -0.50 16 8 C -0.18 -2.90 9.96 22.41 0.22 -2.68 16 9 C 0.18 4.23 6.30 38.16 0.24 4.47 16 10 N -0.66 -15.51 5.32 -306.49 -1.63 -17.14 16 11 C 0.60 19.61 7.66 86.66 0.66 20.27 16 12 O -0.56 -21.58 12.27 -4.07 -0.05 -21.63 16 13 C -0.33 -11.63 6.13 -20.15 -0.12 -11.76 16 14 C 0.08 2.65 11.51 85.65 0.99 3.63 16 15 N -0.33 -14.01 12.50 -56.27 -0.70 -14.71 16 16 N -0.34 -15.41 3.56 -336.69 -1.20 -16.61 16 17 C 0.27 13.75 5.78 85.64 0.50 14.25 16 18 C -0.56 -30.61 9.39 25.60 0.24 -30.37 16 19 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 20 C 0.02 1.28 5.46 84.65 0.46 1.74 16 21 N -0.92 -51.28 13.29 21.45 0.28 -51.00 16 22 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 C 0.15 6.17 7.01 42.14 0.30 6.47 16 27 C -0.09 -3.43 9.34 71.23 0.67 -2.76 16 28 C -0.19 -5.34 8.63 22.49 0.19 -5.15 16 29 H 0.26 1.49 7.80 -4.42 -0.03 1.46 16 30 H 0.11 1.17 7.66 -2.39 -0.02 1.15 16 31 H 0.10 1.23 7.66 -2.39 -0.02 1.21 16 32 H 0.16 1.43 6.29 -2.91 -0.02 1.41 16 33 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.43 6.75 7.79 -92.71 -0.72 6.03 16 36 H 0.23 4.37 7.51 -2.91 -0.02 4.35 16 37 H 0.05 2.58 7.62 -2.39 -0.02 2.56 16 38 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.10 3.59 6.50 -2.38 -0.02 3.58 16 42 H 0.07 2.81 7.70 -2.39 -0.02 2.80 16 43 H 0.11 4.05 6.22 -2.91 -0.02 4.03 16 Total: -1.00 -75.38 380.26 5.27 -70.10 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.34 Total: 19.96 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 7.14 Total: -4.22 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -3.25 Total: -99.46 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.98 Total: -31.07 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -75.38 5.27 -70.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360163663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.572 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds