Wall clock time and date at job start Tue Mar 31 2020 23:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47569 * 315.27177 * 3 2 1 5 5 C 1.35970 * 117.00116 * 180.02562 * 4 3 2 6 6 C 1.38717 * 119.98235 * 179.97438 * 5 4 3 7 7 C 1.38091 * 120.01569 * 180.02562 * 6 5 4 8 8 C 1.38853 * 119.98339 * 359.97438 * 7 6 5 9 9 N 1.40064 * 120.01470 * 180.02562 * 8 7 6 10 10 C 1.34781 * 119.99834 * 146.79203 * 9 8 7 11 11 O 1.21618 * 120.00087 * 354.72538 * 10 9 8 12 12 C 1.47405 * 119.99884 * 174.72305 * 10 9 8 13 13 C 1.41290 * 126.41746 * 359.97438 * 12 10 9 14 14 N 1.30449 * 108.02807 * 180.02562 * 13 12 10 15 15 N 1.39936 * 108.89790 * 359.74291 * 14 13 12 16 16 C 1.46506 * 125.75698 * 180.29273 * 15 14 13 17 17 C 1.50698 * 109.46779 * 270.15933 * 16 15 14 18 18 H 1.08003 * 120.00676 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99472 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99836 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00350 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46891 * 89.99863 * 21 19 17 23 23 H 1.48493 * 109.47604 * 210.00077 * 21 19 17 24 24 H 1.48500 * 109.47167 * 330.00403 * 21 19 17 25 25 C 1.34269 * 108.49050 * 0.43086 * 15 14 13 26 26 C 1.50701 * 126.29367 * 179.84420 * 25 15 14 27 27 C 1.38856 * 119.96753 * 0.28027 * 8 7 6 28 28 C 1.38088 * 119.98287 * 359.46658 * 27 8 7 29 29 H 4.38450 * 5.44448 * 179.97438 * 4 1 2 30 30 H 1.09006 * 109.46797 * 195.26767 * 3 2 1 31 31 H 1.08995 * 109.46887 * 75.27641 * 3 2 1 32 32 H 1.08003 * 119.99579 * 0.02562 * 6 5 4 33 33 H 1.08002 * 120.00591 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00074 * 326.78810 * 9 8 7 35 35 H 1.08003 * 125.98949 * 359.97438 * 13 12 10 36 36 H 1.09001 * 109.46408 * 30.15798 * 16 15 14 37 37 H 1.08992 * 109.46903 * 150.15918 * 16 15 14 38 38 H 0.96997 * 119.99869 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.47347 * 269.71349 * 26 25 15 40 40 H 1.09003 * 109.46945 * 29.71338 * 26 25 15 41 41 H 1.08999 * 109.46888 * 149.70782 * 26 25 15 42 42 H 1.08004 * 120.00684 * 179.72353 * 27 8 7 43 43 H 1.07999 * 119.99179 * 180.22819 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -0.9563 0.9481 5 6 4.4709 -1.0818 1.0738 6 6 5.0012 -1.9919 1.9764 7 6 6.3702 -2.1196 2.1050 8 6 7.2159 -1.3371 1.3302 9 7 8.6045 -1.4664 1.4597 10 6 9.4007 -1.2909 0.3864 11 8 8.9101 -1.1154 -0.7125 12 6 10.8661 -1.3116 0.5446 13 6 11.5770 -1.5031 1.7505 14 7 12.8521 -1.4549 1.4795 15 7 13.0158 -1.2394 0.1065 16 6 14.2967 -1.1298 -0.5962 17 6 14.7385 0.3108 -0.6133 18 1 14.1263 1.0691 -0.1477 19 6 15.9245 0.6609 -1.2233 20 7 16.3104 1.9181 -1.2378 21 14 16.9837 -0.6506 -2.0278 22 1 16.5854 -0.8048 -3.4501 23 1 18.4111 -0.2479 -1.9545 24 1 16.7966 -1.9418 -1.3187 25 6 11.8010 -1.1470 -0.4579 26 6 11.5112 -0.9131 -1.9181 27 6 6.6843 -0.4225 0.4307 28 6 5.3152 -0.2996 0.2994 29 1 -1.0498 -0.0001 0.0004 30 1 3.0088 0.9923 0.2706 31 1 3.0094 -0.2604 -0.9939 32 1 4.3433 -2.6009 2.5787 33 1 6.7829 -2.8280 2.8081 34 1 8.9932 -1.6822 2.3218 35 1 11.1411 -1.6608 2.7260 36 1 15.0453 -1.7335 -0.0830 37 1 14.1813 -1.4867 -1.6195 38 1 17.1445 2.1644 -1.6673 39 1 11.4382 0.1579 -2.1071 40 1 12.3164 -1.3342 -2.5203 41 1 10.5697 -1.3940 -2.1833 42 1 7.3416 0.1897 -0.1691 43 1 4.9016 0.4091 -0.4028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001360374431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:09 Heat of formation + Delta-G solvation = 88.671003 kcal Electronic energy + Delta-G solvation = -27093.516540 eV Core-core repulsion = 23107.760737 eV Total energy + Delta-G solvation = -3985.755803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08956 -40.48165 -39.34598 -37.39593 -34.55815 -33.95628 -33.59535 -32.23348 -31.44846 -31.18854 -29.45404 -28.07749 -27.37961 -26.67226 -23.62316 -23.14516 -22.57666 -21.63138 -19.92698 -19.29145 -18.80835 -18.51268 -17.53545 -17.27294 -16.99364 -16.33519 -16.09059 -15.25022 -15.12053 -14.79313 -14.56248 -14.29067 -14.26379 -13.98055 -13.64912 -13.34614 -13.20238 -13.16860 -12.76620 -12.60778 -12.51301 -12.34530 -12.15955 -11.98633 -11.67535 -11.40937 -11.27629 -10.91271 -10.88001 -10.64303 -10.45369 -10.32365 -9.94623 -9.83762 -9.56055 -9.13625 -8.88789 -8.74016 -8.16405 -7.74615 -6.36772 -4.41946 1.13283 1.23773 1.90734 2.03640 2.32140 2.63186 2.93158 3.07999 3.15015 3.17568 3.26831 3.37326 3.52815 3.84976 3.97629 4.12157 4.60214 4.66208 4.79595 4.85320 4.85557 4.98394 5.07178 5.11497 5.22187 5.33151 5.41309 5.43546 5.56893 5.71924 5.76028 5.87014 5.97036 6.17068 6.21715 6.25525 6.32195 6.39634 6.43767 6.52005 6.75150 6.92386 7.06052 7.13557 7.17350 7.46489 7.51816 8.14884 8.18383 8.37778 8.65911 9.16825 10.75367 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.001891 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.723105 B =14802.723793 C =15412.064816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.197 4.197 3 C 0.172 3.828 4 O -0.313 6.313 5 C 0.104 3.896 6 C -0.129 4.129 7 C -0.111 4.111 8 C 0.128 3.872 9 N -0.675 5.675 10 C 0.605 3.395 11 O -0.537 6.537 12 C -0.332 4.332 13 C 0.063 3.937 14 N -0.290 5.290 15 N -0.312 5.312 16 C 0.224 3.776 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.082 3.918 20 N -0.882 5.882 21 Si 0.873 3.127 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.263 1.263 25 C 0.173 3.827 26 C -0.096 4.096 27 C -0.080 4.080 28 C -0.186 4.186 29 H 0.224 0.776 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.409 0.591 35 H 0.179 0.821 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.271 0.729 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.142 0.858 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.454 -6.839 3.941 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.198 4.198 3 C 0.097 3.903 4 O -0.228 6.228 5 C 0.059 3.941 6 C -0.148 4.148 7 C -0.132 4.132 8 C 0.034 3.966 9 N -0.320 5.320 10 C 0.397 3.603 11 O -0.415 6.415 12 C -0.348 4.348 13 C -0.125 4.125 14 N -0.109 5.109 15 N -0.088 5.088 16 C 0.106 3.894 17 C -0.585 4.585 18 H 0.100 0.900 19 C -0.123 4.123 20 N -0.518 5.518 21 Si 0.698 3.302 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.188 1.188 25 C 0.036 3.964 26 C -0.154 4.154 27 C -0.101 4.101 28 C -0.206 4.206 29 H 0.241 0.759 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.245 0.755 35 H 0.196 0.804 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.159 0.841 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.319 -6.729 3.608 24.537 hybrid contribution 0.068 -0.338 -0.328 0.476 sum -23.251 -7.067 3.280 24.521 Atomic orbital electron populations 1.25013 0.95872 0.98533 0.98581 1.22328 0.93596 1.01927 1.01904 1.19261 0.84794 0.92978 0.93224 1.86080 1.19645 1.58247 1.58791 1.18870 0.81437 0.97008 0.96756 1.20131 0.94369 1.00088 1.00197 1.20702 0.92094 0.98938 1.01416 1.17653 0.83013 0.96614 0.99357 1.43315 1.03998 1.71754 1.12892 1.17371 0.85322 0.74471 0.83142 1.90710 1.76013 1.49639 1.25118 1.19537 0.92196 1.28969 0.94069 1.23776 0.90997 0.99760 0.97975 1.77171 1.18065 1.22700 0.92954 1.48943 1.06694 1.48426 1.04761 1.20180 0.77609 1.00268 0.91393 1.21081 1.07830 0.90475 1.39126 0.90014 1.24789 0.96803 0.95546 0.95169 1.69860 1.22857 1.16389 1.42694 0.86905 0.80669 0.82173 0.80437 1.19484 1.20316 1.18784 1.21481 0.85059 0.93487 0.96336 1.20623 1.03279 1.04001 0.87470 1.21036 0.94461 0.96512 0.98051 1.21127 0.93792 1.02909 1.02732 0.75909 0.89448 0.89417 0.84952 0.84905 0.75533 0.80396 0.92636 0.93342 0.91927 0.89334 0.90972 0.88599 0.84069 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 19.25 29.55 0.57 -0.55 16 2 C -0.20 -1.70 13.73 -37.12 -0.51 -2.21 16 3 C 0.17 1.38 5.21 34.37 0.18 1.56 16 4 O -0.31 -3.29 10.10 -19.65 -0.20 -3.48 16 5 C 0.10 1.11 6.69 -39.23 -0.26 0.85 16 6 C -0.13 -1.26 9.98 -39.46 -0.39 -1.66 16 7 C -0.11 -1.07 9.96 -39.41 -0.39 -1.47 16 8 C 0.13 1.52 6.28 -83.64 -0.53 0.99 16 9 N -0.67 -8.02 5.33 -10.80 -0.06 -8.08 16 10 C 0.60 9.35 7.55 -12.53 -0.09 9.25 16 11 O -0.54 -9.41 12.53 5.26 0.07 -9.34 16 12 C -0.33 -5.64 6.13 -105.07 -0.64 -6.29 16 13 C 0.06 1.01 11.50 -16.98 -0.20 0.81 16 14 N -0.29 -5.87 12.50 30.86 0.39 -5.49 16 15 N -0.31 -6.64 3.56 -57.77 -0.21 -6.85 16 16 C 0.22 5.08 5.04 -5.19 -0.03 5.06 16 17 C -0.55 -14.70 9.94 -34.44 -0.34 -15.04 16 18 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.88 -25.46 13.96 55.43 0.77 -24.69 16 21 Si 0.87 19.42 27.47 -169.99 -4.67 14.75 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 25 C 0.17 3.31 7.01 -81.59 -0.57 2.74 16 26 C -0.10 -1.61 9.57 36.01 0.34 -1.26 16 27 C -0.08 -1.00 8.65 -39.41 -0.34 -1.34 16 28 C -0.19 -1.98 9.03 -39.46 -0.36 -2.33 16 29 H 0.22 0.66 7.80 -54.10 -0.42 0.24 16 30 H 0.09 0.56 7.66 -51.93 -0.40 0.16 16 31 H 0.09 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.41 3.63 7.79 -40.82 -0.32 3.31 16 35 H 0.18 1.95 7.51 -52.48 -0.39 1.56 16 36 H 0.06 1.26 7.20 -51.93 -0.37 0.89 16 37 H 0.05 1.01 6.44 -51.93 -0.33 0.68 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.07 1.14 7.04 -51.93 -0.37 0.77 16 41 H 0.10 1.52 6.50 -51.93 -0.34 1.18 16 42 H 0.14 1.97 6.42 -52.48 -0.34 1.63 16 43 H 0.13 1.08 6.29 -52.49 -0.33 0.75 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -33.35 376.12 -6.76 -40.12 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.87 Total: 6.18 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.66 Total: -8.79 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.90 Total: -45.10 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.13 Total: -12.82 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.67 Total: 14.75 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.35 -6.76 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360374431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.786 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds