Wall clock time and date at job start Tue Mar 31 2020 23:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47569 * 315.27177 * 3 2 1 5 5 C 1.35970 * 117.00116 * 180.02562 * 4 3 2 6 6 C 1.38717 * 119.98235 * 179.97438 * 5 4 3 7 7 C 1.38091 * 120.01569 * 180.02562 * 6 5 4 8 8 C 1.38853 * 119.98339 * 359.97438 * 7 6 5 9 9 N 1.40064 * 120.01470 * 180.02562 * 8 7 6 10 10 C 1.34781 * 119.99834 * 146.79203 * 9 8 7 11 11 O 1.21618 * 120.00087 * 354.72538 * 10 9 8 12 12 C 1.47405 * 119.99884 * 174.72305 * 10 9 8 13 13 C 1.41290 * 126.41746 * 359.97438 * 12 10 9 14 14 N 1.30449 * 108.02807 * 180.02562 * 13 12 10 15 15 N 1.39936 * 108.89790 * 359.74291 * 14 13 12 16 16 C 1.46506 * 125.75698 * 180.29273 * 15 14 13 17 17 C 1.50698 * 109.46779 * 270.15933 * 16 15 14 18 18 H 1.08003 * 120.00676 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99472 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99836 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00350 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46891 * 89.99863 * 21 19 17 23 23 H 1.48493 * 109.47604 * 210.00077 * 21 19 17 24 24 H 1.48500 * 109.47167 * 330.00403 * 21 19 17 25 25 C 1.34269 * 108.49050 * 0.43086 * 15 14 13 26 26 C 1.50701 * 126.29367 * 179.84420 * 25 15 14 27 27 C 1.38856 * 119.96753 * 0.28027 * 8 7 6 28 28 C 1.38088 * 119.98287 * 359.46658 * 27 8 7 29 29 H 4.38450 * 5.44448 * 179.97438 * 4 1 2 30 30 H 1.09006 * 109.46797 * 195.26767 * 3 2 1 31 31 H 1.08995 * 109.46887 * 75.27641 * 3 2 1 32 32 H 1.08003 * 119.99579 * 0.02562 * 6 5 4 33 33 H 1.08002 * 120.00591 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00074 * 326.78810 * 9 8 7 35 35 H 1.08003 * 125.98949 * 359.97438 * 13 12 10 36 36 H 1.09001 * 109.46408 * 30.15798 * 16 15 14 37 37 H 1.08992 * 109.46903 * 150.15918 * 16 15 14 38 38 H 0.96997 * 119.99869 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.47347 * 269.71349 * 26 25 15 40 40 H 1.09003 * 109.46945 * 29.71338 * 26 25 15 41 41 H 1.08999 * 109.46888 * 149.70782 * 26 25 15 42 42 H 1.08004 * 120.00684 * 179.72353 * 27 8 7 43 43 H 1.07999 * 119.99179 * 180.22819 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -0.9563 0.9481 5 6 4.4709 -1.0818 1.0738 6 6 5.0012 -1.9919 1.9764 7 6 6.3702 -2.1196 2.1050 8 6 7.2159 -1.3371 1.3302 9 7 8.6045 -1.4664 1.4597 10 6 9.4007 -1.2909 0.3864 11 8 8.9101 -1.1154 -0.7125 12 6 10.8661 -1.3116 0.5446 13 6 11.5770 -1.5031 1.7505 14 7 12.8521 -1.4549 1.4795 15 7 13.0158 -1.2394 0.1065 16 6 14.2967 -1.1298 -0.5962 17 6 14.7385 0.3108 -0.6133 18 1 14.1263 1.0691 -0.1477 19 6 15.9245 0.6609 -1.2233 20 7 16.3104 1.9181 -1.2378 21 14 16.9837 -0.6506 -2.0278 22 1 16.5854 -0.8048 -3.4501 23 1 18.4111 -0.2479 -1.9545 24 1 16.7966 -1.9418 -1.3187 25 6 11.8010 -1.1470 -0.4579 26 6 11.5112 -0.9131 -1.9181 27 6 6.6843 -0.4225 0.4307 28 6 5.3152 -0.2996 0.2994 29 1 -1.0498 -0.0001 0.0004 30 1 3.0088 0.9923 0.2706 31 1 3.0094 -0.2604 -0.9939 32 1 4.3433 -2.6009 2.5787 33 1 6.7829 -2.8280 2.8081 34 1 8.9932 -1.6822 2.3218 35 1 11.1411 -1.6608 2.7260 36 1 15.0453 -1.7335 -0.0830 37 1 14.1813 -1.4867 -1.6195 38 1 17.1445 2.1644 -1.6673 39 1 11.4382 0.1579 -2.1071 40 1 12.3164 -1.3342 -2.5203 41 1 10.5697 -1.3940 -2.1833 42 1 7.3416 0.1897 -0.1691 43 1 4.9016 0.4091 -0.4028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001360374431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:08 Heat of formation + Delta-G solvation = 67.175320 kcal Electronic energy + Delta-G solvation = -27094.448662 eV Core-core repulsion = 23107.760737 eV Total energy + Delta-G solvation = -3986.687925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.43538 -41.40457 -40.35863 -38.32559 -35.83670 -35.44075 -34.29774 -33.93332 -32.89420 -32.02387 -30.52729 -29.39477 -28.47636 -27.84757 -25.12856 -24.30267 -23.66436 -22.70173 -21.18249 -20.63213 -19.49331 -19.29338 -19.26408 -18.62593 -18.11645 -17.03083 -17.00664 -16.74684 -16.37813 -16.08421 -15.76248 -15.47731 -15.39022 -15.01472 -14.92631 -14.52014 -14.20256 -14.16673 -14.00853 -13.98664 -13.77395 -13.71248 -13.30864 -13.13517 -13.04541 -12.78415 -12.56707 -12.18697 -12.12551 -11.85773 -11.75605 -11.55241 -11.28155 -10.94951 -10.91959 -10.69512 -10.29073 -9.95636 -9.57708 -8.65575 -8.43605 -6.55865 0.24764 0.38690 0.70847 1.29975 1.30681 1.33965 1.34922 1.44951 1.58991 1.76471 2.22189 2.24294 2.41984 2.65707 2.87077 2.88919 3.44753 3.66103 3.69174 3.86677 3.94097 4.06504 4.13875 4.16778 4.29367 4.33894 4.38682 4.46819 4.50084 4.62031 4.68498 4.72123 4.90336 4.96016 5.05647 5.08784 5.11761 5.17052 5.37099 5.39898 5.49473 5.60186 5.81061 5.86658 6.18779 6.39224 6.47148 6.52145 6.53458 6.77033 7.08166 7.24704 8.72784 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.001891 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.723105 B =14802.723793 C =15412.064816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.247 4.247 3 C 0.166 3.834 4 O -0.325 6.325 5 C 0.101 3.899 6 C -0.132 4.132 7 C -0.097 4.097 8 C 0.107 3.893 9 N -0.656 5.656 10 C 0.606 3.394 11 O -0.562 6.562 12 C -0.330 4.330 13 C 0.083 3.917 14 N -0.332 5.332 15 N -0.337 5.337 16 C 0.233 3.767 17 C -0.555 4.555 18 H 0.026 0.974 19 C 0.024 3.976 20 N -0.935 5.935 21 Si 0.949 3.051 22 H -0.252 1.252 23 H -0.278 1.278 24 H -0.242 1.242 25 C 0.152 3.848 26 C -0.091 4.091 27 C -0.100 4.100 28 C -0.190 4.190 29 H 0.258 0.742 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.425 0.575 35 H 0.231 0.769 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.274 0.726 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.274 -9.265 4.583 28.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.247 4.247 3 C 0.092 3.908 4 O -0.240 6.240 5 C 0.056 3.944 6 C -0.151 4.151 7 C -0.117 4.117 8 C 0.013 3.987 9 N -0.302 5.302 10 C 0.397 3.603 11 O -0.441 6.441 12 C -0.346 4.346 13 C -0.104 4.104 14 N -0.151 5.151 15 N -0.114 5.114 16 C 0.113 3.887 17 C -0.593 4.593 18 H 0.044 0.956 19 C -0.176 4.176 20 N -0.573 5.573 21 Si 0.770 3.230 22 H -0.177 1.177 23 H -0.203 1.203 24 H -0.165 1.165 25 C 0.016 3.984 26 C -0.149 4.149 27 C -0.120 4.120 28 C -0.209 4.209 29 H 0.274 0.726 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.170 0.830 33 H 0.182 0.818 34 H 0.263 0.737 35 H 0.247 0.753 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.137 0.863 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -25.188 -9.166 4.288 27.144 hybrid contribution 0.333 0.507 -0.423 0.740 sum -24.854 -8.659 3.864 26.602 Atomic orbital electron populations 1.25921 0.96762 0.96611 0.96652 1.22758 0.94409 1.03769 1.03749 1.19438 0.85041 0.93091 0.93218 1.86061 1.19415 1.58994 1.59499 1.19060 0.81633 0.96973 0.96719 1.20471 0.94810 0.99848 0.99951 1.20967 0.91684 0.98336 1.00737 1.17824 0.82878 0.97616 1.00390 1.43043 1.03990 1.70549 1.12625 1.17190 0.84876 0.74591 0.83634 1.90702 1.76207 1.50865 1.26374 1.19803 0.92963 1.27822 0.93971 1.24579 0.89562 0.96674 0.99610 1.77114 1.20370 1.24881 0.92723 1.48784 1.06603 1.50614 1.05396 1.19906 0.78764 0.97142 0.92846 1.21192 1.07546 0.91855 1.38665 0.95553 1.25814 0.98177 0.98072 0.95584 1.70024 1.23788 1.19162 1.44283 0.85706 0.77925 0.79369 0.80036 1.17657 1.20312 1.16516 1.21980 0.85020 0.93684 0.97669 1.20619 1.04029 1.03455 0.86751 1.20989 0.95037 0.97276 0.98745 1.21246 0.93145 1.03337 1.03133 0.72635 0.88312 0.88577 0.82972 0.81811 0.73663 0.75329 0.92471 0.91078 0.91654 0.90321 0.90079 0.87716 0.86272 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 19.25 74.32 1.43 -0.25 16 2 C -0.25 -4.00 13.73 31.13 0.43 -3.57 16 3 C 0.17 2.55 5.21 70.18 0.37 2.92 16 4 O -0.32 -6.46 10.10 -93.22 -0.94 -7.40 16 5 C 0.10 2.02 6.69 22.50 0.15 2.17 16 6 C -0.13 -2.27 9.98 22.35 0.22 -2.05 16 7 C -0.10 -1.60 9.96 22.38 0.22 -1.38 16 8 C 0.11 2.36 6.28 38.12 0.24 2.60 16 9 N -0.66 -14.35 5.33 -306.34 -1.63 -15.99 16 10 C 0.61 18.22 7.55 86.66 0.65 18.87 16 11 O -0.56 -19.73 12.53 -4.09 -0.05 -19.78 16 12 C -0.33 -10.97 6.13 -20.16 -0.12 -11.09 16 13 C 0.08 2.53 11.50 85.65 0.99 3.52 16 14 N -0.33 -13.34 12.50 -56.27 -0.70 -14.05 16 15 N -0.34 -14.49 3.56 -336.68 -1.20 -15.69 16 16 C 0.23 10.60 5.04 85.63 0.43 11.03 16 17 C -0.55 -30.92 9.94 25.60 0.25 -30.67 16 18 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 19 C 0.02 1.31 5.47 84.66 0.46 1.77 16 20 N -0.93 -55.94 13.96 21.45 0.30 -55.64 16 21 Si 0.95 39.79 27.47 68.60 1.88 41.67 16 22 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 25 C 0.15 5.85 7.01 42.14 0.30 6.14 16 26 C -0.09 -3.08 9.57 71.24 0.68 -2.40 16 27 C -0.10 -2.48 8.65 22.38 0.19 -2.29 16 28 C -0.19 -3.92 9.03 22.35 0.20 -3.72 16 29 H 0.26 0.72 7.80 -4.43 -0.03 0.68 16 30 H 0.10 1.22 7.66 -2.38 -0.02 1.20 16 31 H 0.10 1.24 7.66 -2.39 -0.02 1.23 16 32 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.42 6.21 7.79 -92.71 -0.72 5.49 16 35 H 0.23 4.17 7.51 -2.91 -0.02 4.15 16 36 H 0.06 2.56 7.20 -2.39 -0.02 2.54 16 37 H 0.07 2.88 6.44 -2.39 -0.02 2.87 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.08 2.55 7.04 -2.39 -0.02 2.53 16 41 H 0.10 3.34 6.50 -2.39 -0.02 3.32 16 42 H 0.12 3.46 6.42 -2.91 -0.02 3.44 16 43 H 0.15 2.37 6.29 -2.91 -0.02 2.36 16 Total: -1.00 -76.74 376.12 5.04 -71.70 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.29 Total: 23.56 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 7.10 Total: -8.40 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -3.24 Total: -101.36 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.99 Total: -27.18 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.88 Total: 41.67 kcal Total: -76.74 5.04 -71.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001360374431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.879 kcal (2) G-P(sol) polarization free energy of solvation -76.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds