Wall clock time and date at job start Tue Mar 31 2020 22:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86791 * 119.99972 * 2 1 4 4 H 1.48505 * 109.47224 * 239.99905 * 3 2 1 5 5 H 1.48506 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47473 * 119.99649 * 3 2 1 7 7 C 1.40034 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.41334 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.40617 * 119.78570 * 179.97438 * 9 7 2 11 11 C 1.38313 * 119.12616 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67028 * 359.75008 * 11 10 9 13 13 C 1.39638 * 119.49598 * 0.51641 * 12 11 10 14 14 N 1.39268 * 119.57233 * 179.75157 * 13 12 11 15 15 C 1.34781 * 119.99787 * 185.39513 * 14 13 12 16 16 O 1.21276 * 119.99894 * 354.85372 * 15 14 13 17 17 C 1.50701 * 120.00101 * 174.85767 * 15 14 13 18 18 C 1.52998 * 109.47173 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47173 * 180.02562 * 18 17 15 20 20 C 1.38355 * 119.85599 * 269.72417 * 19 18 17 21 21 C 1.37957 * 120.14466 * 179.72151 * 20 19 18 22 22 C 1.39571 * 119.85359 * 0.54880 * 21 20 19 23 23 C 1.47850 * 120.14637 * 179.70029 * 22 21 20 24 24 N 1.34779 * 119.99691 * 0.02834 * 23 22 21 25 25 O 1.21549 * 120.00006 * 180.02562 * 23 22 21 26 26 C 1.39576 * 119.71237 * 359.73027 * 22 21 20 27 27 C 1.37960 * 119.85266 * 359.97438 * 26 22 21 28 28 N 1.31933 * 120.84944 * 359.47095 * 13 12 11 29 29 H 0.96992 * 120.00203 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.43707 * 359.97438 * 10 9 7 31 31 H 1.07998 * 120.66367 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.25386 * 180.24503 * 12 11 10 33 33 H 0.96997 * 120.00212 * 5.39034 * 14 13 12 34 34 H 1.09000 * 109.47023 * 60.00063 * 17 15 14 35 35 H 1.08996 * 109.47270 * 300.00109 * 17 15 14 36 36 H 1.08991 * 109.47178 * 59.99859 * 18 17 15 37 37 H 1.09005 * 109.47007 * 299.99967 * 18 17 15 38 38 H 1.08005 * 119.92465 * 0.02562 * 20 19 18 39 39 H 1.08005 * 120.07013 * 180.25910 * 21 20 19 40 40 H 0.97007 * 120.00058 * 359.97438 * 24 23 22 41 41 H 0.96993 * 119.99970 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.07484 * 179.97438 * 26 22 21 43 43 H 1.07998 * 119.92883 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3009 -2.4367 0.0005 10 6 2.0085 -3.6519 0.0005 11 6 1.3032 -4.8416 0.0000 12 6 -0.0829 -4.7935 0.0048 13 6 -0.7278 -3.5550 -0.0010 14 7 -2.1196 -3.5048 -0.0014 15 6 -2.7511 -2.3196 -0.1167 16 8 -2.1108 -1.2897 -0.1260 17 6 -4.2529 -2.2743 -0.2339 18 6 -4.7116 -0.8194 -0.3505 19 6 -6.2134 -0.7741 -0.4671 20 6 -6.8090 -0.8148 -1.7152 21 6 -8.1834 -0.7794 -1.8286 22 6 -8.9731 -0.6908 -0.6812 23 6 -10.4465 -0.6458 -0.7955 24 7 -11.0298 -0.6909 -2.0096 25 8 -11.1316 -0.5681 0.2055 26 6 -8.3658 -0.6442 0.5747 27 6 -6.9905 -0.6865 0.6744 28 7 -0.0356 -2.4318 -0.0004 29 1 -0.4850 0.8400 -0.0004 30 1 3.0885 -3.6561 0.0001 31 1 1.8214 -5.7892 0.0004 32 1 -0.6591 -5.7069 0.0085 33 1 -2.6344 -4.3226 0.0811 34 1 -4.7002 -2.7260 0.6516 35 1 -4.5650 -2.8263 -1.1204 36 1 -4.2643 -0.3673 -1.2357 37 1 -4.3996 -0.2678 0.5363 38 1 -6.1966 -0.8794 -2.6026 39 1 -8.6472 -0.8155 -2.8033 40 1 -10.4830 -0.7525 -2.8085 41 1 -11.9964 -0.6617 -2.0846 42 1 -8.9712 -0.5752 1.4664 43 1 -6.5193 -0.6502 1.6455 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361493281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:58 Heat of formation + Delta-G solvation = -0.464779 kcal Electronic energy + Delta-G solvation = -27433.600965 eV Core-core repulsion = 23443.979944 eV Total energy + Delta-G solvation = -3989.621020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.40440 -39.36665 -38.60854 -37.48298 -34.46607 -34.13586 -33.57258 -32.99815 -31.15327 -30.39771 -30.07854 -28.83723 -25.84185 -25.15167 -22.90211 -22.77592 -21.67648 -21.07616 -20.45319 -19.21960 -18.51000 -17.72788 -17.18066 -16.37686 -16.12807 -15.57719 -15.27456 -15.15361 -15.04486 -14.68887 -14.57824 -14.45543 -13.85721 -13.65915 -13.56815 -13.43784 -13.01403 -12.87228 -12.66198 -12.03464 -11.90611 -11.76581 -11.45897 -11.38737 -11.13724 -10.97573 -10.79741 -10.67312 -10.47739 -10.37988 -10.09814 -9.96274 -9.66883 -9.24058 -9.10016 -9.02025 -8.84981 -7.97435 -7.21746 -6.97107 -6.15007 -4.40936 0.57505 1.13394 2.57653 2.77224 3.07041 3.15172 3.15631 3.17622 3.26350 3.58210 3.73881 3.86977 4.05389 4.45069 4.49436 4.68553 4.78177 4.90838 5.10169 5.12996 5.18670 5.34058 5.39331 5.60085 5.72414 5.75008 5.94207 6.00349 6.03975 6.09983 6.12311 6.26404 6.38716 6.46039 6.48385 6.65790 6.68297 6.83064 6.84331 6.94576 7.22992 7.54523 7.62070 7.80500 7.89060 8.05939 8.19422 8.46334 8.73363 9.04090 9.26594 10.23705 10.47077 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.002289 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.481302 B =12229.616126 C =13552.285650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.656 5.656 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.425 4.425 8 H 0.081 0.919 9 C 0.270 3.730 10 C -0.305 4.305 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.371 3.629 14 N -0.668 5.668 15 C 0.468 3.532 16 O -0.409 6.409 17 C -0.132 4.132 18 C -0.071 4.071 19 C -0.042 4.042 20 C -0.125 4.125 21 C -0.084 4.084 22 C -0.154 4.154 23 C 0.565 3.435 24 N -0.853 5.853 25 O -0.544 6.544 26 C -0.056 4.056 27 C -0.125 4.125 28 N -0.473 5.473 29 H 0.272 0.728 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.398 0.602 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.401 0.599 41 H 0.404 0.596 42 H 0.135 0.865 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -1.433 -4.830 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.171 4.171 3 Si 0.721 3.279 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.132 3.868 14 N -0.315 5.315 15 C 0.249 3.751 16 O -0.273 6.273 17 C -0.172 4.172 18 C -0.109 4.109 19 C -0.042 4.042 20 C -0.143 4.143 21 C -0.102 4.102 22 C -0.157 4.157 23 C 0.352 3.648 24 N -0.417 5.417 25 O -0.422 6.422 26 C -0.075 4.075 27 C -0.143 4.143 28 N -0.192 5.192 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.232 0.768 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.231 0.769 41 H 0.235 0.765 42 H 0.152 0.848 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.289 0.433 -4.118 18.752 hybrid contribution 0.379 -0.778 -0.500 0.999 sum -17.910 -0.344 -4.618 18.499 Atomic orbital electron populations 1.70312 1.05723 1.27457 1.23946 1.26172 0.95155 1.00549 0.95244 0.86580 0.80209 0.81495 0.79652 1.19214 1.20388 1.19198 1.19543 0.94028 0.89387 1.42605 0.90040 1.18394 0.87242 0.91943 0.87907 1.21629 0.98548 0.93554 1.19127 1.20563 0.93219 0.96512 0.95801 1.20505 0.94807 0.95003 1.28062 1.18646 0.83442 0.90899 0.93788 1.43457 1.05064 1.09413 1.73589 1.20734 0.89271 0.84958 0.80092 1.91153 1.65498 1.30733 1.39898 1.21638 0.94232 0.97784 1.03583 1.20441 0.88920 0.96286 1.05222 1.20321 0.96472 0.94476 0.92970 1.21076 0.94267 1.01270 0.97710 1.21228 0.94027 0.97828 0.97160 1.19808 0.92254 1.08725 0.94879 1.18355 0.88093 0.75102 0.83233 1.43767 1.11534 1.77968 1.08427 1.90811 1.65158 1.49758 1.36427 1.21266 0.94642 0.94703 0.96846 1.21159 0.93103 1.01072 0.98937 1.68708 1.06953 1.23216 1.20322 0.91585 0.88602 0.88676 0.89143 0.76836 0.89704 0.89685 0.89592 0.89557 0.85110 0.85818 0.76931 0.76542 0.84750 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.75 9.00 55.55 0.50 -17.25 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 3 Si 0.90 19.02 29.56 -169.99 -5.02 14.00 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.43 -11.59 9.14 -37.73 -0.34 -11.93 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.27 7.54 6.55 -85.00 -0.56 6.98 16 10 C -0.31 -7.66 9.83 -38.66 -0.38 -8.04 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -7.95 9.95 -38.89 -0.39 -8.34 16 13 C 0.37 8.88 7.43 -154.97 -1.15 7.73 16 14 N -0.67 -12.58 5.38 -11.40 -0.06 -12.64 16 15 C 0.47 8.70 7.79 -10.98 -0.09 8.61 16 16 O -0.41 -9.63 11.76 5.56 0.07 -9.56 16 17 C -0.13 -1.64 5.68 -27.88 -0.16 -1.80 16 18 C -0.07 -0.87 4.63 -27.88 -0.13 -1.00 16 19 C -0.04 -0.44 5.14 -104.53 -0.54 -0.97 16 20 C -0.13 -1.13 9.68 -39.64 -0.38 -1.52 16 21 C -0.08 -0.66 9.54 -39.19 -0.37 -1.04 16 22 C -0.15 -1.51 5.87 -104.97 -0.62 -2.12 16 23 C 0.57 5.76 8.05 -12.33 -0.10 5.66 16 24 N -0.85 -4.93 8.82 30.53 0.27 -4.66 16 25 O -0.54 -7.66 17.18 5.32 0.09 -7.57 16 26 C -0.06 -0.58 9.60 -39.18 -0.38 -0.96 16 27 C -0.12 -1.26 9.68 -39.64 -0.38 -1.65 16 28 N -0.47 -13.06 5.74 -10.26 -0.06 -13.12 16 29 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 30 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.40 5.71 8.70 -40.82 -0.36 5.35 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.15 8.04 -51.93 -0.42 0.73 16 37 H 0.09 1.16 8.04 -51.93 -0.42 0.75 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.12 0.57 6.41 -52.48 -0.34 0.23 16 40 H 0.40 1.22 6.86 -40.82 -0.28 0.94 16 41 H 0.40 1.81 8.93 -40.82 -0.36 1.45 16 42 H 0.13 1.39 7.65 -52.49 -0.40 0.99 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -35.58 370.31 -10.17 -45.75 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.08 Total: 9.67 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -6.46 Total: -10.20 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.65 Total: -47.67 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.16 Total: -17.14 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.58 -10.17 -45.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361493281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.288 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds