Wall clock time and date at job start Tue Mar 31 2020 22:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86791 * 119.99972 * 2 1 4 4 H 1.48505 * 109.47224 * 239.99905 * 3 2 1 5 5 H 1.48506 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47473 * 119.99649 * 3 2 1 7 7 C 1.40034 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.41334 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.40617 * 119.78570 * 179.97438 * 9 7 2 11 11 C 1.38313 * 119.12616 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67028 * 359.75008 * 11 10 9 13 13 C 1.39638 * 119.49598 * 0.51641 * 12 11 10 14 14 N 1.39268 * 119.57233 * 179.75157 * 13 12 11 15 15 C 1.34781 * 119.99787 * 185.39513 * 14 13 12 16 16 O 1.21276 * 119.99894 * 354.85372 * 15 14 13 17 17 C 1.50701 * 120.00101 * 174.85767 * 15 14 13 18 18 C 1.52998 * 109.47173 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47173 * 180.02562 * 18 17 15 20 20 C 1.38355 * 119.85599 * 269.72417 * 19 18 17 21 21 C 1.37957 * 120.14466 * 179.72151 * 20 19 18 22 22 C 1.39571 * 119.85359 * 0.54880 * 21 20 19 23 23 C 1.47850 * 120.14637 * 179.70029 * 22 21 20 24 24 N 1.34779 * 119.99691 * 0.02834 * 23 22 21 25 25 O 1.21549 * 120.00006 * 180.02562 * 23 22 21 26 26 C 1.39576 * 119.71237 * 359.73027 * 22 21 20 27 27 C 1.37960 * 119.85266 * 359.97438 * 26 22 21 28 28 N 1.31933 * 120.84944 * 359.47095 * 13 12 11 29 29 H 0.96992 * 120.00203 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.43707 * 359.97438 * 10 9 7 31 31 H 1.07998 * 120.66367 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.25386 * 180.24503 * 12 11 10 33 33 H 0.96997 * 120.00212 * 5.39034 * 14 13 12 34 34 H 1.09000 * 109.47023 * 60.00063 * 17 15 14 35 35 H 1.08996 * 109.47270 * 300.00109 * 17 15 14 36 36 H 1.08991 * 109.47178 * 59.99859 * 18 17 15 37 37 H 1.09005 * 109.47007 * 299.99967 * 18 17 15 38 38 H 1.08005 * 119.92465 * 0.02562 * 20 19 18 39 39 H 1.08005 * 120.07013 * 180.25910 * 21 20 19 40 40 H 0.97007 * 120.00058 * 359.97438 * 24 23 22 41 41 H 0.96993 * 119.99970 * 179.97438 * 24 23 22 42 42 H 1.07996 * 120.07484 * 179.97438 * 26 22 21 43 43 H 1.07998 * 119.92883 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6963 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3009 -2.4367 0.0005 10 6 2.0085 -3.6519 0.0005 11 6 1.3032 -4.8416 0.0000 12 6 -0.0829 -4.7935 0.0048 13 6 -0.7278 -3.5550 -0.0010 14 7 -2.1196 -3.5048 -0.0014 15 6 -2.7511 -2.3196 -0.1167 16 8 -2.1108 -1.2897 -0.1260 17 6 -4.2529 -2.2743 -0.2339 18 6 -4.7116 -0.8194 -0.3505 19 6 -6.2134 -0.7741 -0.4671 20 6 -6.8090 -0.8148 -1.7152 21 6 -8.1834 -0.7794 -1.8286 22 6 -8.9731 -0.6908 -0.6812 23 6 -10.4465 -0.6458 -0.7955 24 7 -11.0298 -0.6909 -2.0096 25 8 -11.1316 -0.5681 0.2055 26 6 -8.3658 -0.6442 0.5747 27 6 -6.9905 -0.6865 0.6744 28 7 -0.0356 -2.4318 -0.0004 29 1 -0.4850 0.8400 -0.0004 30 1 3.0885 -3.6561 0.0001 31 1 1.8214 -5.7892 0.0004 32 1 -0.6591 -5.7069 0.0085 33 1 -2.6344 -4.3226 0.0811 34 1 -4.7002 -2.7260 0.6516 35 1 -4.5650 -2.8263 -1.1204 36 1 -4.2643 -0.3673 -1.2357 37 1 -4.3996 -0.2678 0.5363 38 1 -6.1966 -0.8794 -2.6026 39 1 -8.6472 -0.8155 -2.8033 40 1 -10.4830 -0.7525 -2.8085 41 1 -11.9964 -0.6617 -2.0846 42 1 -8.9712 -0.5752 1.4664 43 1 -6.5193 -0.6502 1.6455 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361493281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:57 Heat of formation + Delta-G solvation = -24.392114 kcal Electronic energy + Delta-G solvation = -27434.638532 eV Core-core repulsion = 23443.979944 eV Total energy + Delta-G solvation = -3990.658587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20749 -40.87705 -39.60094 -39.06559 -35.93950 -35.20151 -34.79323 -34.46168 -32.21168 -31.86699 -31.38961 -30.32131 -27.54495 -26.36474 -24.00877 -23.61434 -23.26013 -22.63697 -21.26947 -20.73095 -19.52073 -19.16456 -17.92467 -17.87192 -17.68359 -16.55670 -16.49582 -16.25008 -16.06787 -16.03566 -15.84141 -15.64334 -15.44697 -14.94382 -14.65547 -14.49026 -14.39400 -14.19039 -13.74799 -13.68061 -13.49387 -12.84716 -12.77254 -12.70937 -12.55760 -12.38726 -12.29632 -12.19738 -11.77607 -11.74994 -11.44483 -11.20714 -10.82729 -10.75147 -10.57676 -9.95105 -9.87059 -9.74607 -9.04540 -8.77824 -8.03066 -6.39884 -0.18591 0.42029 0.95090 1.27684 1.41016 1.51960 1.54549 1.80456 2.22272 2.27794 2.42271 2.53776 2.87703 3.01777 3.66266 3.81976 3.91518 4.03096 4.07155 4.10173 4.24014 4.29135 4.43481 4.45456 4.54070 4.69340 4.80309 4.84778 4.94672 4.95514 4.97807 5.10435 5.11391 5.26861 5.28526 5.32825 5.38206 5.65527 5.70610 5.84161 5.89618 5.92797 5.95057 6.18080 6.40114 6.40372 6.79004 6.88871 7.11212 7.26887 7.78240 8.37831 8.58669 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.002289 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.481302 B =12229.616126 C =13552.285650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.012 3.988 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.467 4.467 8 H 0.083 0.917 9 C 0.236 3.764 10 C -0.332 4.332 11 C -0.036 4.036 12 C -0.348 4.348 13 C 0.349 3.651 14 N -0.658 5.658 15 C 0.458 3.542 16 O -0.463 6.463 17 C -0.113 4.113 18 C -0.063 4.063 19 C -0.048 4.048 20 C -0.126 4.126 21 C -0.070 4.070 22 C -0.161 4.161 23 C 0.562 3.438 24 N -0.829 5.829 25 O -0.592 6.592 26 C -0.070 4.070 27 C -0.129 4.129 28 N -0.506 5.506 29 H 0.271 0.729 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.420 0.580 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.147 0.853 39 H 0.163 0.837 40 H 0.417 0.583 41 H 0.413 0.587 42 H 0.127 0.873 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.251 -2.666 -6.326 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.214 4.214 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.497 4.497 8 H 0.101 0.899 9 C 0.110 3.890 10 C -0.355 4.355 11 C -0.060 4.060 12 C -0.374 4.374 13 C 0.110 3.890 14 N -0.307 5.307 15 C 0.243 3.757 16 O -0.329 6.329 17 C -0.153 4.153 18 C -0.100 4.100 19 C -0.048 4.048 20 C -0.144 4.144 21 C -0.089 4.089 22 C -0.165 4.165 23 C 0.349 3.651 24 N -0.393 5.393 25 O -0.474 6.474 26 C -0.089 4.089 27 C -0.147 4.147 28 N -0.226 5.226 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.258 0.742 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.165 0.835 39 H 0.180 0.820 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.145 0.855 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.774 -0.862 -5.663 20.588 hybrid contribution 0.736 -0.577 -0.079 0.938 sum -19.039 -1.438 -5.742 19.938 Atomic orbital electron populations 1.70500 1.07097 1.28049 1.24951 1.26993 0.96077 1.03802 0.94498 0.85411 0.78707 0.76702 0.79743 1.18606 1.19729 1.18701 1.19853 0.94372 0.90528 1.44986 0.89851 1.18886 0.88155 0.93306 0.88663 1.21801 0.99128 0.93944 1.20652 1.21030 0.93704 0.97239 0.94017 1.20996 0.95140 0.95913 1.25305 1.19204 0.85566 0.90947 0.93321 1.43497 1.03359 1.10938 1.72923 1.21831 0.91626 0.83978 0.78251 1.91151 1.67283 1.32478 1.42027 1.21569 0.89142 0.98514 1.06037 1.20267 0.90332 0.95876 1.03569 1.20146 0.95000 0.95827 0.93837 1.21300 0.94978 1.00557 0.97565 1.21549 0.93416 0.95782 0.98137 1.19939 0.92384 1.08835 0.95300 1.18484 0.88152 0.74774 0.83713 1.43582 1.12311 1.75752 1.07695 1.90791 1.66015 1.52349 1.38238 1.21304 0.94716 0.95551 0.97306 1.21182 0.93034 1.01266 0.99236 1.68686 1.07132 1.25359 1.21374 0.91821 0.87984 0.84751 0.85105 0.74198 0.87203 0.86747 0.91070 0.91642 0.83486 0.81979 0.75010 0.75512 0.85518 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -38.88 9.00 21.84 0.20 -38.68 16 2 C 0.01 0.65 5.50 85.29 0.47 1.12 16 3 Si 0.97 40.43 29.56 68.60 2.03 42.46 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.47 -26.57 9.14 23.47 0.21 -26.36 16 8 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.24 13.61 6.55 40.21 0.26 13.87 16 10 C -0.33 -16.88 9.83 22.87 0.22 -16.65 16 11 C -0.04 -1.56 10.15 22.40 0.23 -1.33 16 12 C -0.35 -14.72 9.95 22.72 0.23 -14.49 16 13 C 0.35 16.57 7.43 133.23 0.99 17.56 16 14 N -0.66 -23.98 5.38 -308.37 -1.66 -25.64 16 15 C 0.46 16.93 7.79 87.66 0.68 17.62 16 16 O -0.46 -22.52 11.76 -3.02 -0.04 -22.56 16 17 C -0.11 -2.59 5.68 29.85 0.17 -2.42 16 18 C -0.06 -1.51 4.63 29.85 0.14 -1.37 16 19 C -0.05 -0.92 5.14 -19.81 -0.10 -1.02 16 20 C -0.13 -1.93 9.68 22.23 0.22 -1.72 16 21 C -0.07 -0.89 9.54 22.52 0.21 -0.67 16 22 C -0.16 -2.89 5.87 -20.09 -0.12 -3.00 16 23 C 0.56 10.62 8.05 86.79 0.70 11.32 16 24 N -0.83 -7.35 8.82 -175.60 -1.55 -8.90 16 25 O -0.59 -16.63 17.18 -3.87 -0.07 -16.69 16 26 C -0.07 -1.43 9.60 22.53 0.22 -1.21 16 27 C -0.13 -2.54 9.68 22.23 0.22 -2.32 16 28 N -0.51 -28.73 5.74 -186.36 -1.07 -29.80 16 29 H 0.27 14.42 8.29 -92.71 -0.77 13.65 16 30 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 32 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.42 10.91 8.70 -92.71 -0.81 10.11 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.01 16 36 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 37 H 0.06 1.84 8.04 -2.38 -0.02 1.82 16 38 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.16 0.70 6.41 -2.91 -0.02 0.68 16 40 H 0.42 0.94 6.86 -92.70 -0.64 0.31 16 41 H 0.41 2.69 8.93 -92.71 -0.83 1.87 16 42 H 0.13 2.72 7.65 -2.91 -0.02 2.69 16 43 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -82.78 370.31 1.61 -81.17 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -1.18 Total: 29.71 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 4.94 Total: -11.08 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -4.08 Total: -103.01 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.10 Total: -39.25 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -82.78 1.61 -81.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361493281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.779 kcal (2) G-P(sol) polarization free energy of solvation -82.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds