Wall clock time and date at job start Tue Mar 31 2020 23:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38481 * 120.82489 * 2 1 4 4 C 1.39283 * 119.19059 * 180.26488 * 3 2 1 5 5 C 1.48292 * 119.56845 * 179.73016 * 4 3 2 6 6 O 1.21501 * 120.00340 * 359.72620 * 5 4 3 7 7 N 1.34778 * 119.99614 * 179.73006 * 5 4 3 8 8 C 1.39815 * 119.99794 * 185.19612 * 7 5 4 9 9 C 1.38899 * 120.07421 * 33.64630 * 8 7 5 10 10 C 1.38108 * 119.92314 * 179.97438 * 9 8 7 11 11 C 1.38287 * 120.07517 * 0.02562 * 10 9 8 12 12 C 1.50705 * 119.92460 * 179.72058 * 11 10 9 13 13 C 1.50699 * 109.46927 * 90.00129 * 12 11 10 14 14 H 1.07995 * 119.99951 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99724 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00233 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99886 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47097 * 89.99959 * 17 15 13 19 19 H 1.48498 * 109.47113 * 210.00204 * 17 15 13 20 20 H 1.48502 * 109.46948 * 329.99843 * 17 15 13 21 21 C 1.38282 * 120.14723 * 0.02562 * 11 10 9 22 22 C 1.38110 * 120.07428 * 359.97438 * 21 11 10 23 23 N 1.32761 * 120.85773 * 359.45423 * 4 3 2 24 24 C 1.31381 * 121.79603 * 0.27327 * 23 4 3 25 25 C 1.39767 * 120.72283 * 0.02562 * 24 23 4 26 26 C 1.47992 * 120.46342 * 180.02562 * 25 24 23 27 27 N 1.34778 * 120.00233 * 353.85563 * 26 25 24 28 28 O 1.21532 * 120.00127 * 173.86552 * 26 25 24 29 29 H 1.09003 * 109.46992 * 263.65460 * 1 2 3 30 30 H 1.08997 * 109.47079 * 23.64465 * 1 2 3 31 31 H 1.08991 * 109.47542 * 143.65190 * 1 2 3 32 32 H 1.07995 * 120.40134 * 359.97438 * 3 2 1 33 33 H 0.97000 * 120.00721 * 5.18661 * 7 5 4 34 34 H 1.08001 * 120.04139 * 359.96480 * 9 8 7 35 35 H 1.08010 * 119.95865 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.46792 * 210.00031 * 12 11 10 37 37 H 1.09004 * 109.47206 * 329.99822 * 12 11 10 38 38 H 0.97002 * 119.99794 * 179.97438 * 16 15 13 39 39 H 1.07999 * 119.96323 * 179.97438 * 21 11 10 40 40 H 1.07998 * 120.03560 * 179.97438 * 22 21 11 41 41 H 1.08004 * 119.63930 * 179.97438 * 24 23 4 42 42 H 0.97001 * 119.99417 * 0.02562 * 27 26 25 43 43 H 0.97001 * 120.00310 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2165 1.1892 0.0000 4 6 3.6088 1.1495 -0.0056 5 6 4.3770 2.4179 -0.0117 6 8 3.7918 3.4826 -0.0169 7 7 5.7245 2.3895 -0.0117 8 6 6.4488 3.5809 0.0922 9 6 5.9522 4.6335 0.8504 10 6 6.6704 5.8088 0.9513 11 6 7.8824 5.9385 0.2982 12 6 8.6604 7.2248 0.4055 13 6 9.5915 7.1515 1.5882 14 1 9.6170 6.2626 2.2010 15 6 10.4099 8.2196 1.8884 16 7 10.3777 9.3026 1.1430 17 14 11.5636 8.1291 3.3549 18 1 12.8695 7.5691 2.9234 19 1 11.7679 9.4916 3.9088 20 1 10.9703 7.2545 4.3981 21 6 8.3791 4.8929 -0.4583 22 6 7.6660 3.7149 -0.5634 23 7 4.2570 -0.0091 -0.0001 24 6 3.6205 -1.1584 0.0055 25 6 2.2234 -1.2010 0.0053 26 6 1.5123 -2.4988 0.0122 27 7 2.2062 -3.6481 -0.1062 28 8 0.3025 -2.5283 0.1244 29 1 -0.3633 -0.1136 1.0214 30 1 -0.3633 0.9414 -0.4121 31 1 -0.3634 -0.8276 -0.6090 32 1 1.6967 2.1358 -0.0004 33 1 6.1919 1.5426 -0.0836 34 1 5.0054 4.5331 1.3603 35 1 6.2846 6.6278 1.5404 36 1 9.2405 7.3755 -0.5049 37 1 7.9694 8.0574 0.5381 38 1 10.9533 10.0542 1.3545 39 1 9.3258 4.9976 -0.9674 40 1 8.0543 2.8989 -1.1547 41 1 4.1829 -2.0805 0.0095 42 1 3.1718 -3.6246 -0.1956 43 1 1.7401 -4.4988 -0.1021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361762240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:15 Heat of formation + Delta-G solvation = -15.223045 kcal Electronic energy + Delta-G solvation = -26955.938477 eV Core-core repulsion = 22965.677491 eV Total energy + Delta-G solvation = -3990.260987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51544 -40.31672 -39.21404 -38.05398 -35.16086 -34.77214 -34.17040 -33.00935 -31.96468 -30.44374 -30.30730 -28.45607 -27.05387 -25.51446 -23.63343 -23.06887 -22.42553 -21.91791 -20.75993 -20.01345 -18.54148 -18.30051 -17.93889 -16.93326 -16.43195 -16.28079 -15.85826 -15.69840 -15.43922 -15.11488 -14.94752 -14.46553 -14.25549 -14.21767 -13.77906 -13.43163 -13.23906 -13.17935 -13.00762 -12.84288 -12.67218 -12.59322 -12.04128 -11.42712 -11.29050 -10.87175 -10.77769 -10.65426 -10.46103 -10.38316 -10.32364 -10.09577 -10.02765 -9.86972 -9.81972 -9.46450 -9.27877 -8.41919 -8.31534 -7.41556 -6.03150 -4.07249 -0.28587 0.59763 1.71180 2.03268 2.14331 2.70727 2.76213 2.85830 3.30776 3.36976 3.38099 3.41484 3.53313 4.00798 4.11715 4.22301 4.37940 4.39175 4.54900 4.61568 4.93240 5.15500 5.18809 5.29320 5.30812 5.41791 5.52475 5.56883 5.78329 5.89651 5.93767 6.02893 6.07291 6.15083 6.17734 6.61984 6.63054 6.71599 6.82715 7.05066 7.14524 7.19021 7.45353 7.51387 7.57998 7.67250 7.85973 7.92549 8.01430 8.32764 8.98065 9.56481 11.06390 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028704 B = 0.001804 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.245004 B =15521.177369 C =15842.860272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.019 3.981 3 C -0.120 4.120 4 C 0.114 3.886 5 C 0.563 3.437 6 O -0.507 6.507 7 N -0.643 5.643 8 C 0.100 3.900 9 C -0.116 4.116 10 C -0.108 4.108 11 C -0.039 4.039 12 C 0.047 3.953 13 C -0.511 4.511 14 H 0.057 0.943 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.108 4.108 22 C -0.138 4.138 23 N -0.467 5.467 24 C 0.140 3.860 25 C -0.185 4.185 26 C 0.570 3.430 27 N -0.848 5.848 28 O -0.527 6.527 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.159 0.841 33 H 0.416 0.584 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.262 0.738 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.166 0.834 42 H 0.402 0.598 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.278 -26.534 -4.315 31.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.010 3.990 3 C -0.141 4.141 4 C -0.023 4.023 5 C 0.347 3.653 6 O -0.382 6.382 7 N -0.287 5.287 8 C 0.008 3.992 9 C -0.135 4.135 10 C -0.126 4.126 11 C -0.040 4.040 12 C 0.010 3.990 13 C -0.549 4.549 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.127 4.127 22 C -0.158 4.158 23 N -0.179 5.179 24 C -0.021 4.021 25 C -0.190 4.190 26 C 0.355 3.645 27 N -0.413 5.413 28 O -0.404 6.404 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.177 0.823 33 H 0.253 0.747 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.183 0.817 42 H 0.232 0.768 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -16.508 -25.385 -4.241 30.577 hybrid contribution 0.517 -0.905 0.749 1.284 sum -15.991 -26.290 -3.492 30.969 Atomic orbital electron populations 1.21135 0.88312 1.04134 1.04429 1.20534 0.97967 0.90763 0.89709 1.22114 0.93578 0.99835 0.98580 1.21359 0.91797 0.92143 0.97045 1.17886 0.82357 0.87367 0.77641 1.90840 1.69427 1.29755 1.48129 1.43154 1.05487 1.09505 1.70602 1.17515 0.93670 0.87085 1.00975 1.20983 1.00425 0.93377 0.98760 1.20999 0.94828 0.96990 0.99812 1.20745 0.93273 0.97818 0.92138 1.18368 0.94326 0.88448 0.97848 1.21061 1.20984 1.01153 1.11734 0.92438 1.25017 0.97227 0.95346 0.96787 1.69960 1.39355 1.05064 1.38892 0.86538 0.81106 0.77292 0.82777 1.20616 1.21185 1.19821 1.20900 0.99570 0.92319 0.99890 1.20759 0.95282 0.98803 1.00970 1.67558 1.40561 0.97732 1.12002 1.22895 0.90178 0.96249 0.92826 1.20952 0.95244 0.94371 1.08440 1.17999 0.86764 0.83909 0.75830 1.43744 1.11872 1.08581 1.77057 1.90805 1.13560 1.87124 1.48955 0.89523 0.91085 0.88215 0.82326 0.74716 0.85882 0.85946 0.95246 0.95211 0.92853 0.85860 0.86617 0.81688 0.76842 0.75968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 8.82 36.00 0.32 -0.59 16 2 C 0.02 0.16 5.95 -103.93 -0.62 -0.46 16 3 C -0.12 -1.15 9.30 -39.10 -0.36 -1.51 16 4 C 0.11 1.23 6.75 -82.94 -0.56 0.67 16 5 C 0.56 7.74 7.55 -12.12 -0.09 7.64 16 6 O -0.51 -8.45 14.01 5.36 0.08 -8.37 16 7 N -0.64 -8.63 5.32 -10.59 -0.06 -8.69 16 8 C 0.10 1.65 6.27 -83.73 -0.53 1.13 16 9 C -0.12 -2.12 8.65 -39.38 -0.34 -2.46 16 10 C -0.11 -2.18 9.69 -39.61 -0.38 -2.57 16 11 C -0.04 -0.86 5.07 -104.59 -0.53 -1.39 16 12 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 13 C -0.51 -14.25 9.09 -34.44 -0.31 -14.56 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 17 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.11 -2.07 9.69 -39.61 -0.38 -2.45 16 22 C -0.14 -2.25 9.97 -39.38 -0.39 -2.64 16 23 N -0.47 -4.22 9.53 -9.48 -0.09 -4.31 16 24 C 0.14 0.89 10.69 -17.17 -0.18 0.70 16 25 C -0.18 -1.34 5.90 -104.73 -0.62 -1.95 16 26 C 0.57 3.89 8.00 -12.26 -0.10 3.79 16 27 N -0.85 -2.29 8.83 30.56 0.27 -2.02 16 28 O -0.53 -5.26 14.33 5.34 0.08 -5.19 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 31 H 0.10 0.82 5.97 -51.93 -0.31 0.51 16 32 H 0.16 1.46 7.63 -52.49 -0.40 1.06 16 33 H 0.42 4.51 8.15 -40.82 -0.33 4.17 16 34 H 0.12 2.20 6.44 -52.49 -0.34 1.87 16 35 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.37 16 37 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.17 0.35 6.46 -52.48 -0.34 0.01 16 42 H 0.40 0.01 6.93 -40.82 -0.28 -0.28 16 43 H 0.41 0.64 8.93 -40.82 -0.36 0.28 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -34.66 371.21 -8.60 -43.27 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.86 Total: 2.94 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -5.33 Total: -14.08 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.86 Total: -40.64 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.15 Total: -13.56 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.66 -8.60 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361762240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.043 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds