Wall clock time and date at job start Tue Mar 31 2020 22:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00008 * 2 1 4 4 H 1.48503 * 109.47111 * 94.89740 * 3 2 1 5 5 H 1.48497 * 109.47144 * 214.89876 * 3 2 1 6 6 H 1.48499 * 109.46965 * 334.90199 * 3 2 1 7 7 C 1.37875 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99742 * 1.12851 * 7 2 1 9 9 C 1.50690 * 120.00698 * 181.13691 * 7 2 1 10 10 C 1.53008 * 115.54911 * 273.70431 * 9 7 2 11 11 S 1.81402 * 109.46930 * 299.60367 * 10 9 7 12 12 O 1.42103 * 110.54371 * 297.57339 * 11 10 9 13 13 O 1.42099 * 110.54374 * 74.32157 * 11 10 9 14 14 N 1.65600 * 104.45104 * 185.94873 * 11 10 9 15 15 C 1.46918 * 120.62872 * 89.99851 * 14 11 10 16 16 C 1.53196 * 108.77651 * 126.37509 * 15 14 11 17 17 C 1.53034 * 109.31636 * 54.62745 * 16 15 14 18 18 C 1.53045 * 109.54185 * 298.64499 * 17 16 15 19 19 H 1.09003 * 109.49237 * 301.41186 * 18 17 16 20 20 C 1.50697 * 109.50116 * 181.34689 * 18 17 16 21 21 N 1.30492 * 125.65303 * 144.68744 * 20 18 17 22 22 C 1.34127 * 109.26080 * 179.89142 * 21 20 18 23 23 C 1.34675 * 108.01505 * 0.37520 * 22 21 20 24 24 N 1.35046 * 125.64673 * 324.99902 * 20 18 17 25 25 H 0.97000 * 126.39708 * 359.97438 * 24 20 18 26 26 C 1.46929 * 120.62707 * 269.72214 * 14 11 10 27 27 C 1.52996 * 117.50720 * 127.99325 * 9 7 2 28 28 C 1.53003 * 60.00293 * 252.51124 * 27 9 7 29 29 H 0.96997 * 120.00001 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47265 * 59.59975 * 10 9 7 31 31 H 1.09001 * 109.47264 * 179.60734 * 10 9 7 32 32 H 1.09005 * 109.58962 * 246.15613 * 15 14 11 33 33 H 1.08993 * 109.59182 * 6.44042 * 15 14 11 34 34 H 1.08997 * 109.49981 * 174.58584 * 16 15 14 35 35 H 1.09007 * 109.48986 * 294.68169 * 16 15 14 36 36 H 1.09003 * 109.45719 * 58.65734 * 17 16 15 37 37 H 1.08991 * 109.46701 * 178.63209 * 17 16 15 38 38 H 1.08001 * 125.99326 * 180.18706 * 22 21 20 39 39 H 1.07998 * 126.58819 * 179.81684 * 23 22 21 40 40 H 1.08997 * 109.58501 * 353.41489 * 26 14 11 41 41 H 1.09003 * 109.58637 * 113.84652 * 26 14 11 42 42 H 1.09007 * 117.49645 * 359.97438 * 27 9 7 43 43 H 1.08998 * 117.50748 * 145.01879 * 27 9 7 44 44 H 1.08992 * 117.49424 * 252.50774 * 28 27 9 45 45 H 1.08998 * 117.49761 * 107.48465 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6002 1.9867 1.3950 5 1 3.4911 1.4723 -0.8010 6 1 1.3986 2.6804 -0.5939 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1293 -0.0194 9 6 3.5113 -1.1942 0.0254 10 6 4.1948 -1.0908 -1.3397 11 16 3.7107 -2.5054 -2.3669 12 8 4.1459 -3.7225 -1.7766 13 8 2.3760 -2.3519 -2.8298 14 7 4.6359 -2.3602 -3.7326 15 6 5.9585 -2.9949 -3.8117 16 6 6.0125 -3.8671 -5.0700 17 6 5.6487 -3.0183 -6.2902 18 6 4.2236 -2.4824 -6.1346 19 1 3.5307 -3.3171 -6.0283 20 6 3.8544 -1.6741 -7.3517 21 7 2.6691 -1.6143 -7.8941 22 6 2.7099 -0.7979 -8.9576 23 6 3.9704 -0.3408 -9.0836 24 7 4.6968 -0.8963 -8.0652 25 1 5.6405 -0.7574 -7.8889 26 6 4.1471 -1.5992 -4.8906 27 6 4.1995 -2.0406 1.0981 28 6 4.1976 -0.5149 1.2122 29 1 -0.4850 0.8400 0.0004 30 1 3.8908 -0.1655 -1.8291 31 1 5.2765 -1.0925 -1.2055 32 1 6.7299 -2.2267 -3.8664 33 1 6.1206 -3.6131 -2.9288 34 1 7.0189 -4.2675 -5.1922 35 1 5.3027 -4.6888 -4.9737 36 1 6.3439 -2.1827 -6.3716 37 1 5.7100 -3.6305 -7.1899 38 1 1.8784 -0.5528 -9.6018 39 1 4.3373 0.3348 -9.8421 40 1 3.1132 -1.2989 -4.7203 41 1 4.7677 -0.7148 -5.0350 42 1 3.5624 -2.5972 1.7855 43 1 5.1392 -2.5243 0.8315 44 1 5.1361 0.0052 1.0207 45 1 3.5593 -0.0680 1.9743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363957270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:53 Heat of formation + Delta-G solvation = 14.598607 kcal Electronic energy + Delta-G solvation = -28533.745411 eV Core-core repulsion = 24680.221540 eV Total energy + Delta-G solvation = -3853.523872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.23473 -38.57606 -37.13535 -36.41306 -35.13580 -33.16429 -32.52432 -32.16179 -31.80465 -28.56720 -28.48281 -25.55966 -24.64868 -23.87057 -21.94830 -21.72316 -20.84288 -20.28954 -19.41813 -18.42283 -18.00761 -17.19516 -16.63743 -15.91567 -15.39348 -15.21005 -14.92786 -14.70149 -14.46839 -14.42839 -14.06682 -13.92293 -13.70107 -13.58654 -13.50016 -12.99744 -12.63012 -12.62731 -12.40868 -11.67605 -11.58243 -11.37644 -11.36445 -11.20291 -11.19062 -10.90779 -10.75146 -10.64846 -10.61691 -10.38674 -10.15341 -10.12331 -10.09025 -9.72924 -9.18519 -9.05283 -8.66704 -8.55120 -8.39739 -6.15698 -4.24645 0.87635 1.89418 2.92934 3.03449 3.21208 3.22428 3.30827 3.33119 4.09850 4.34602 4.45258 4.53191 4.59065 4.75538 4.76290 4.84833 4.92627 5.02451 5.03632 5.14243 5.17035 5.27311 5.32278 5.40767 5.46847 5.54252 5.58776 5.72495 5.74082 5.82292 5.88970 5.93125 5.96146 6.01107 6.12066 6.16461 6.19908 6.40323 6.59636 6.62048 6.71783 6.86564 7.04367 7.18685 7.58894 8.00503 8.37074 8.88558 9.44800 10.95825 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.004129 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.082460 B = 6779.312603 C = 7955.873243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.091 3.909 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.291 1.291 7 C -0.514 4.514 8 H 0.087 0.913 9 C 0.002 3.998 10 C -0.578 4.578 11 S 2.613 3.387 12 O -0.963 6.963 13 O -0.928 6.928 14 N -1.010 6.010 15 C 0.114 3.886 16 C -0.129 4.129 17 C -0.113 4.113 18 C -0.017 4.017 19 H 0.111 0.889 20 C 0.221 3.779 21 N -0.481 5.481 22 C -0.026 4.026 23 C -0.062 4.062 24 N -0.566 5.566 25 H 0.417 0.583 26 C 0.127 3.873 27 C -0.174 4.174 28 C -0.187 4.187 29 H 0.268 0.732 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.830 -0.869 -15.398 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.114 4.114 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.185 1.185 6 H -0.217 1.217 7 C -0.551 4.551 8 H 0.105 0.895 9 C -0.001 4.001 10 C -0.710 4.710 11 S 2.710 3.290 12 O -0.954 6.954 13 O -0.918 6.918 14 N -0.846 5.846 15 C -0.012 4.012 16 C -0.168 4.168 17 C -0.151 4.151 18 C -0.038 4.038 19 H 0.129 0.871 20 C -0.044 4.044 21 N -0.200 5.200 22 C -0.174 4.174 23 C -0.195 4.195 24 N -0.169 5.169 25 H 0.254 0.746 26 C 0.001 3.999 27 C -0.212 4.212 28 C -0.226 4.226 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.251 -1.857 -15.004 21.475 hybrid contribution 1.979 2.338 -0.313 3.079 sum 17.230 0.481 -15.317 23.059 Atomic orbital electron populations 1.69880 1.06364 1.27380 1.47758 1.24937 0.94520 0.98898 0.93051 0.86946 0.80252 0.83501 0.79021 1.19875 1.18536 1.21723 1.20340 0.85533 0.95468 1.53736 0.89507 1.18848 0.94938 1.02538 0.83783 1.30351 1.07823 1.19984 1.12793 1.05121 0.73981 0.76609 0.73321 1.93492 1.82697 1.41652 1.77521 1.93602 1.33033 1.86862 1.78345 1.58252 1.30484 1.66088 1.29763 1.21430 0.83922 0.96093 0.99748 1.21837 1.02420 0.98598 0.93969 1.21567 0.94750 0.99766 0.99054 1.19913 0.98416 0.97457 0.88055 0.87126 1.23066 0.86086 0.97747 0.97455 1.70320 1.20559 1.19768 1.09388 1.22404 0.96450 1.00076 0.98483 1.22738 0.93797 1.06205 0.96791 1.43269 1.12496 1.37326 1.23824 0.74554 1.21269 1.01826 0.92720 0.84132 1.22973 1.01317 0.92815 1.04055 1.22999 1.01177 0.95288 1.03136 0.92210 0.85709 0.87717 0.91831 0.88478 0.90432 0.90643 0.92081 0.91201 0.81303 0.80720 0.87524 0.91983 0.88636 0.90191 0.90754 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.09 2.62 5.47 -17.82 -0.10 2.52 16 3 Si 0.88 21.20 24.92 -169.99 -4.24 16.97 16 4 H -0.27 -6.39 7.06 56.52 0.40 -5.99 16 5 H -0.26 -5.80 5.68 56.52 0.32 -5.48 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.51 -14.44 8.47 -34.45 -0.29 -14.73 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 C 0.00 0.04 0.87 -155.66 -0.14 -0.10 16 10 C -0.58 -11.28 5.81 37.16 0.22 -11.07 16 11 S 2.61 51.70 5.10 -107.50 -0.55 51.15 16 12 O -0.96 -20.27 16.59 -57.54 -0.95 -21.22 16 13 O -0.93 -22.52 16.07 -57.54 -0.92 -23.44 16 14 N -1.01 -14.53 3.23 -113.77 -0.37 -14.90 16 15 C 0.11 1.23 6.43 -3.71 -0.02 1.21 16 16 C -0.13 -1.16 6.08 -26.61 -0.16 -1.32 16 17 C -0.11 -0.94 4.89 -26.69 -0.13 -1.07 16 18 C -0.02 -0.20 2.79 -91.87 -0.26 -0.45 16 19 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 20 C 0.22 2.71 6.88 -155.42 -1.07 1.64 16 21 N -0.48 -7.17 11.25 -10.82 -0.12 -7.29 16 22 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 23 C -0.06 -0.54 12.04 -16.56 -0.20 -0.74 16 24 N -0.57 -4.97 5.91 -10.23 -0.06 -5.03 16 25 H 0.42 2.30 8.20 -40.82 -0.33 1.97 16 26 C 0.13 1.72 5.67 -3.93 -0.02 1.70 16 27 C -0.17 -3.55 9.95 -26.73 -0.27 -3.82 16 28 C -0.19 -3.86 7.67 -26.73 -0.21 -4.07 16 29 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 30 H 0.12 2.43 6.34 -51.92 -0.33 2.10 16 31 H 0.10 1.62 8.11 -51.92 -0.42 1.19 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 1.11 6.86 -51.93 -0.36 0.75 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 36 H 0.06 0.39 7.49 -51.93 -0.39 0.00 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.11 1.74 6.85 -51.93 -0.36 1.38 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.09 2.01 7.28 -51.93 -0.38 1.63 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -37.02 368.67 -10.59 -47.61 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.86 Total: 7.52 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: -2.85 Total: -30.81 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.22 Total: -53.33 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.88 Total: -44.66 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.24 Total: 16.97 kcal Atomic # 16 Polarization: 51.70 SS G_CDS: -0.55 Total: 51.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.02 -10.59 -47.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363957270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.213 kcal (2) G-P(sol) polarization free energy of solvation -37.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds