Wall clock time and date at job start Tue Mar 31 2020 22:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00008 * 2 1 4 4 H 1.48503 * 109.47111 * 94.89740 * 3 2 1 5 5 H 1.48497 * 109.47144 * 214.89876 * 3 2 1 6 6 H 1.48499 * 109.46965 * 334.90199 * 3 2 1 7 7 C 1.37875 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99742 * 1.12851 * 7 2 1 9 9 C 1.50690 * 120.00698 * 181.13691 * 7 2 1 10 10 C 1.53008 * 115.54911 * 273.70431 * 9 7 2 11 11 S 1.81402 * 109.46930 * 299.60367 * 10 9 7 12 12 O 1.42103 * 110.54371 * 297.57339 * 11 10 9 13 13 O 1.42099 * 110.54374 * 74.32157 * 11 10 9 14 14 N 1.65600 * 104.45104 * 185.94873 * 11 10 9 15 15 C 1.46918 * 120.62872 * 89.99851 * 14 11 10 16 16 C 1.53196 * 108.77651 * 126.37509 * 15 14 11 17 17 C 1.53034 * 109.31636 * 54.62745 * 16 15 14 18 18 C 1.53045 * 109.54185 * 298.64499 * 17 16 15 19 19 H 1.09003 * 109.49237 * 301.41186 * 18 17 16 20 20 C 1.50697 * 109.50116 * 181.34689 * 18 17 16 21 21 N 1.30492 * 125.65303 * 144.68744 * 20 18 17 22 22 C 1.34127 * 109.26080 * 179.89142 * 21 20 18 23 23 C 1.34675 * 108.01505 * 0.37520 * 22 21 20 24 24 N 1.35046 * 125.64673 * 324.99902 * 20 18 17 25 25 H 0.97000 * 126.39708 * 359.97438 * 24 20 18 26 26 C 1.46929 * 120.62707 * 269.72214 * 14 11 10 27 27 C 1.52996 * 117.50720 * 127.99325 * 9 7 2 28 28 C 1.53003 * 60.00293 * 252.51124 * 27 9 7 29 29 H 0.96997 * 120.00001 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47265 * 59.59975 * 10 9 7 31 31 H 1.09001 * 109.47264 * 179.60734 * 10 9 7 32 32 H 1.09005 * 109.58962 * 246.15613 * 15 14 11 33 33 H 1.08993 * 109.59182 * 6.44042 * 15 14 11 34 34 H 1.08997 * 109.49981 * 174.58584 * 16 15 14 35 35 H 1.09007 * 109.48986 * 294.68169 * 16 15 14 36 36 H 1.09003 * 109.45719 * 58.65734 * 17 16 15 37 37 H 1.08991 * 109.46701 * 178.63209 * 17 16 15 38 38 H 1.08001 * 125.99326 * 180.18706 * 22 21 20 39 39 H 1.07998 * 126.58819 * 179.81684 * 23 22 21 40 40 H 1.08997 * 109.58501 * 353.41489 * 26 14 11 41 41 H 1.09003 * 109.58637 * 113.84652 * 26 14 11 42 42 H 1.09007 * 117.49645 * 359.97438 * 27 9 7 43 43 H 1.08998 * 117.50748 * 145.01879 * 27 9 7 44 44 H 1.08992 * 117.49424 * 252.50774 * 28 27 9 45 45 H 1.08998 * 117.49761 * 107.48465 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6002 1.9867 1.3950 5 1 3.4911 1.4723 -0.8010 6 1 1.3986 2.6804 -0.5939 7 6 2.0046 -1.1940 -0.0005 8 1 1.4648 -2.1293 -0.0194 9 6 3.5113 -1.1942 0.0254 10 6 4.1948 -1.0908 -1.3397 11 16 3.7107 -2.5054 -2.3669 12 8 4.1459 -3.7225 -1.7766 13 8 2.3760 -2.3519 -2.8298 14 7 4.6359 -2.3602 -3.7326 15 6 5.9585 -2.9949 -3.8117 16 6 6.0125 -3.8671 -5.0700 17 6 5.6487 -3.0183 -6.2902 18 6 4.2236 -2.4824 -6.1346 19 1 3.5307 -3.3171 -6.0283 20 6 3.8544 -1.6741 -7.3517 21 7 2.6691 -1.6143 -7.8941 22 6 2.7099 -0.7979 -8.9576 23 6 3.9704 -0.3408 -9.0836 24 7 4.6968 -0.8963 -8.0652 25 1 5.6405 -0.7574 -7.8889 26 6 4.1471 -1.5992 -4.8906 27 6 4.1995 -2.0406 1.0981 28 6 4.1976 -0.5149 1.2122 29 1 -0.4850 0.8400 0.0004 30 1 3.8908 -0.1655 -1.8291 31 1 5.2765 -1.0925 -1.2055 32 1 6.7299 -2.2267 -3.8664 33 1 6.1206 -3.6131 -2.9288 34 1 7.0189 -4.2675 -5.1922 35 1 5.3027 -4.6888 -4.9737 36 1 6.3439 -2.1827 -6.3716 37 1 5.7100 -3.6305 -7.1899 38 1 1.8784 -0.5528 -9.6018 39 1 4.3373 0.3348 -9.8421 40 1 3.1132 -1.2989 -4.7203 41 1 4.7677 -0.7148 -5.0350 42 1 3.5624 -2.5972 1.7855 43 1 5.1392 -2.5243 0.8315 44 1 5.1361 0.0052 1.0207 45 1 3.5593 -0.0680 1.9743 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363957270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:52 Heat of formation + Delta-G solvation = -14.428824 kcal Electronic energy + Delta-G solvation = -28535.004135 eV Core-core repulsion = 24680.221540 eV Total energy + Delta-G solvation = -3854.782595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.03927 -39.48882 -38.84808 -38.06360 -36.80266 -34.31889 -34.10647 -33.36586 -32.64966 -30.10403 -29.34779 -27.64320 -25.57952 -24.76824 -23.35072 -22.74461 -21.71260 -21.28909 -21.06388 -19.72726 -19.00369 -18.60742 -18.35743 -17.24177 -16.98575 -16.76807 -16.12165 -15.63400 -15.62061 -15.46932 -15.29227 -14.95014 -14.85678 -14.75236 -14.46208 -14.37237 -14.34186 -14.01897 -13.58503 -13.21428 -12.99782 -12.95713 -12.83459 -12.64190 -12.38143 -12.37415 -12.06162 -11.96782 -11.83509 -11.72091 -11.71330 -11.47262 -11.01302 -10.99939 -10.96123 -10.72736 -10.37164 -9.92728 -9.29755 -8.33727 -6.48308 -0.63015 1.12468 1.31689 1.34605 1.46434 1.86360 2.18521 2.27242 2.33176 2.93432 2.98157 3.14469 3.25420 3.36804 3.64469 3.76673 3.82705 4.03162 4.09506 4.18563 4.28469 4.32253 4.32717 4.34438 4.39596 4.54307 4.57241 4.61581 4.68563 4.73791 4.82862 4.85153 4.94369 5.01135 5.06159 5.11277 5.16037 5.19688 5.23789 5.39011 5.45115 5.59601 5.67895 5.83360 6.16725 6.56369 6.63628 7.20542 7.25239 8.82997 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.004129 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.082460 B = 6779.312603 C = 7955.873243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.254 1.254 5 H -0.218 1.218 6 H -0.297 1.297 7 C -0.517 4.517 8 H 0.024 0.976 9 C -0.037 4.037 10 C -0.569 4.569 11 S 2.611 3.389 12 O -0.987 6.987 13 O -0.995 6.995 14 N -1.000 6.000 15 C 0.101 3.899 16 C -0.130 4.130 17 C -0.103 4.103 18 C -0.014 4.014 19 H 0.073 0.927 20 C 0.205 3.795 21 N -0.541 5.541 22 C -0.069 4.069 23 C -0.029 4.029 24 N -0.547 5.547 25 H 0.436 0.564 26 C 0.125 3.875 27 C -0.169 4.169 28 C -0.168 4.168 29 H 0.268 0.732 30 H 0.128 0.872 31 H 0.161 0.839 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.178 0.822 39 H 0.221 0.779 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.191 1.570 -16.824 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.178 1.178 5 H -0.140 1.140 6 H -0.224 1.224 7 C -0.554 4.554 8 H 0.042 0.958 9 C -0.039 4.039 10 C -0.702 4.702 11 S 2.710 3.290 12 O -0.977 6.977 13 O -0.985 6.985 14 N -0.839 5.839 15 C -0.022 4.022 16 C -0.169 4.169 17 C -0.141 4.141 18 C -0.036 4.036 19 H 0.092 0.908 20 C -0.060 4.060 21 N -0.262 5.262 22 C -0.216 4.216 23 C -0.164 4.164 24 N -0.152 5.152 25 H 0.278 0.722 26 C -0.001 4.001 27 C -0.206 4.206 28 C -0.207 4.207 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.179 0.821 32 H 0.127 0.873 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.067 0.933 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.195 0.805 39 H 0.237 0.763 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.663 0.536 -16.421 27.188 hybrid contribution -0.055 1.440 0.081 1.443 sum 21.608 1.976 -16.339 27.162 Atomic orbital electron populations 1.70071 1.08872 1.28469 1.50575 1.26004 0.95303 1.03590 0.92562 0.85972 0.80232 0.77396 0.80638 1.17834 1.14041 1.22425 1.20471 0.89064 0.93104 1.52811 0.95759 1.18772 0.92092 1.06485 0.86588 1.30175 1.10859 1.19121 1.10006 1.04713 0.73274 0.76737 0.74255 1.93445 1.82746 1.43001 1.78509 1.93528 1.37593 1.87670 1.79722 1.57759 1.31500 1.66608 1.28006 1.21895 0.82499 0.97501 1.00348 1.21891 1.03821 0.97712 0.93427 1.21569 0.92534 1.00924 0.99102 1.19819 1.00265 0.96063 0.87432 0.90841 1.22895 0.86219 0.98951 0.97956 1.70217 1.22853 1.21744 1.11337 1.22784 0.98649 1.01314 0.98816 1.23344 0.92449 1.04405 0.96219 1.43164 1.13149 1.35969 1.22898 0.72213 1.21360 1.00285 0.94282 0.84208 1.23075 1.02008 0.93415 1.02116 1.23102 1.02023 0.95327 1.00226 0.92295 0.85396 0.82088 0.87315 0.89198 0.86728 0.93257 0.88443 0.90202 0.80527 0.76273 0.91799 0.88162 0.90364 0.86555 0.86158 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.54 13.96 21.45 0.30 -61.24 16 2 C 0.02 1.46 5.47 84.65 0.46 1.92 16 3 Si 0.94 43.02 24.92 68.60 1.71 44.73 16 4 H -0.25 -10.84 7.06 99.48 0.70 -10.14 16 5 H -0.22 -8.46 5.68 99.48 0.57 -7.89 16 6 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.52 -30.54 8.47 25.60 0.22 -30.32 16 8 H 0.02 1.67 8.06 -2.91 -0.02 1.64 16 9 C -0.04 -1.65 0.87 -52.93 -0.05 -1.70 16 10 C -0.57 -20.61 5.81 71.98 0.42 -20.19 16 11 S 2.61 105.07 5.10 -56.49 -0.29 104.78 16 12 O -0.99 -42.25 16.59 -127.65 -2.12 -44.37 16 13 O -1.00 -52.42 16.07 -127.65 -2.05 -54.47 16 14 N -1.00 -27.38 3.23 -513.85 -1.66 -29.04 16 15 C 0.10 1.82 6.43 86.37 0.56 2.37 16 16 C -0.13 -1.92 6.08 30.67 0.19 -1.73 16 17 C -0.10 -1.37 4.89 30.62 0.15 -1.22 16 18 C -0.01 -0.32 2.79 -11.61 -0.03 -0.35 16 19 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 20 C 0.20 4.86 6.88 138.13 0.95 5.81 16 21 N -0.54 -16.68 11.25 -188.13 -2.12 -18.80 16 22 C -0.07 -1.57 11.87 83.53 0.99 -0.58 16 23 C -0.03 -0.42 12.04 83.09 1.00 0.58 16 24 N -0.55 -7.73 5.91 -186.28 -1.10 -8.83 16 25 H 0.44 2.54 8.20 -92.71 -0.76 1.78 16 26 C 0.13 3.28 5.67 86.22 0.49 3.77 16 27 C -0.17 -6.53 9.95 30.59 0.30 -6.22 16 28 C -0.17 -6.28 7.67 30.60 0.23 -6.04 16 29 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 30 H 0.13 4.57 6.34 -2.39 -0.02 4.55 16 31 H 0.16 3.95 8.11 -2.39 -0.02 3.93 16 32 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.09 1.78 6.86 -2.39 -0.02 1.76 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.98 8.14 -2.38 -0.02 0.97 16 36 H 0.10 0.62 7.49 -2.39 -0.02 0.60 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.18 3.37 8.06 -2.91 -0.02 3.34 16 39 H 0.22 1.05 8.06 -2.91 -0.02 1.03 16 40 H 0.06 2.23 6.85 -2.39 -0.02 2.22 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 43 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 44 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 45 H 0.08 3.19 7.28 -2.39 -0.02 3.17 16 Total: -1.00 -93.37 368.67 -1.35 -94.72 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.10 Total: 26.42 kcal Atomic # 6 Polarization: -59.77 SS G_CDS: 5.88 Total: -53.89 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -4.58 Total: -117.91 kcal Atomic # 8 Polarization: -94.67 SS G_CDS: -4.17 Total: -98.84 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.71 Total: 44.73 kcal Atomic # 16 Polarization: 105.07 SS G_CDS: -0.29 Total: 104.78 kcal Total: -93.37 -1.35 -94.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363957270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.287 kcal (2) G-P(sol) polarization free energy of solvation -93.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds