Wall clock time and date at job start Tue Mar 31 2020 22:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86808 * 119.99903 * 2 1 4 4 H 1.48498 * 109.47211 * 240.00082 * 3 2 1 5 5 H 1.48495 * 109.46864 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46586 * 120.00197 * 3 2 1 7 7 C 1.40031 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.41336 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.40606 * 119.78563 * 179.97438 * 9 7 2 11 11 C 1.38312 * 119.13022 * 180.02562 * 10 9 7 12 12 C 1.38686 * 118.66775 * 359.74421 * 11 10 9 13 13 C 1.39647 * 119.49829 * 0.50233 * 12 11 10 14 14 N 1.39250 * 119.57737 * 179.77387 * 13 12 11 15 15 C 1.34771 * 120.00318 * 174.26730 * 14 13 12 16 16 O 1.21577 * 119.99728 * 5.37535 * 15 14 13 17 17 N 1.34771 * 120.00321 * 185.37257 * 15 14 13 18 18 C 1.47583 * 134.49581 * 179.97438 * 17 15 14 19 19 C 1.53951 * 86.11569 * 155.36375 * 18 17 15 20 20 O 1.42897 * 113.73770 * 137.95797 * 19 18 17 21 21 C 1.35899 * 116.99957 * 158.19055 * 20 19 18 22 22 C 1.38734 * 120.05582 * 356.77483 * 21 20 19 23 23 C 1.38139 * 119.94445 * 180.30120 * 22 21 20 24 24 C 1.38263 * 120.05635 * 359.95260 * 23 22 21 25 25 C 1.38268 * 120.11244 * 0.04818 * 24 23 22 26 26 C 1.38142 * 120.05691 * 359.97438 * 25 24 23 27 27 C 1.47809 * 134.45541 * 359.87185 * 17 15 14 28 28 N 1.31925 * 120.84802 * 359.48735 * 13 12 11 29 29 H 0.96999 * 120.00226 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.43468 * 359.97438 * 10 9 7 31 31 H 1.08002 * 120.66622 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.25230 * 180.24754 * 12 11 10 33 33 H 0.97001 * 119.99551 * 354.25718 * 14 13 12 34 34 H 1.09000 * 113.76350 * 41.06417 * 18 17 15 35 35 H 1.08993 * 113.87347 * 269.68204 * 18 17 15 36 36 H 1.08997 * 113.73888 * 269.15393 * 19 18 17 37 37 H 1.07999 * 120.02583 * 0.25581 * 22 21 20 38 38 H 1.07996 * 119.97154 * 179.97438 * 23 22 21 39 39 H 1.08005 * 119.94795 * 180.02562 * 24 23 22 40 40 H 1.08004 * 119.97017 * 179.97438 * 25 24 23 41 41 H 1.07997 * 120.03014 * 179.97438 * 26 25 24 42 42 H 1.09003 * 113.77367 * 90.37229 * 27 17 15 43 43 H 1.09001 * 113.83622 * 318.91496 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0077 -1.2127 -0.0005 8 1 3.0877 -1.2126 -0.0001 9 6 1.3010 -2.4367 -0.0005 10 6 2.0086 -3.6517 -0.0016 11 6 1.3034 -4.8416 -0.0022 12 6 -0.0826 -4.7935 0.0038 13 6 -0.7277 -3.5550 -0.0004 14 7 -2.1193 -3.5048 0.0008 15 6 -2.7509 -2.3195 0.1133 16 8 -2.1094 -1.2868 0.1153 17 7 -4.0935 -2.2791 0.2235 18 6 -5.0879 -1.1972 0.3603 19 6 -6.0945 -2.1870 -0.2538 20 8 -7.3742 -2.1747 0.3819 21 6 -8.4258 -2.6448 -0.3392 22 6 -8.2425 -3.0459 -1.6546 23 6 -9.3143 -3.5175 -2.3874 24 6 -10.5688 -3.5909 -1.8107 25 6 -10.7542 -3.1918 -0.5000 26 6 -9.6857 -2.7190 0.2370 27 6 -5.1609 -3.3010 0.2539 28 7 -0.0357 -2.4318 0.0000 29 1 -0.4850 0.8400 0.0004 30 1 3.0886 -3.6559 -0.0029 31 1 1.8217 -5.7891 -0.0026 32 1 -0.6588 -5.7070 0.0076 33 1 -2.6342 -4.3230 -0.0795 34 1 -4.8839 -0.3309 -0.2690 35 1 -5.3093 -0.9296 1.3935 36 1 -6.1592 -2.1296 -1.3403 37 1 -7.2628 -2.9887 -2.1055 38 1 -9.1722 -3.8294 -3.4115 39 1 -11.4055 -3.9603 -2.3852 40 1 -11.7352 -3.2497 -0.0519 41 1 -9.8310 -2.4070 1.2607 42 1 -5.4028 -3.6540 1.2565 43 1 -5.0152 -4.1116 -0.4601 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364466630.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:27 Heat of formation + Delta-G solvation = 56.713858 kcal Electronic energy + Delta-G solvation = -27986.833100 eV Core-core repulsion = 23999.691532 eV Total energy + Delta-G solvation = -3987.141569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.82595 -40.89220 -39.90492 -38.75607 -37.35882 -35.90955 -34.84798 -32.25318 -31.96709 -31.43786 -30.71454 -29.30708 -27.50932 -27.19697 -24.76751 -23.67174 -23.34088 -22.96959 -21.80082 -20.50055 -19.74078 -19.49247 -18.63315 -18.06132 -17.28313 -16.77953 -16.66701 -16.41400 -16.25538 -16.12242 -15.67890 -15.49494 -15.48009 -14.80093 -14.72559 -14.39612 -14.28930 -13.95212 -13.92697 -13.69493 -13.66552 -13.07874 -12.88034 -12.73469 -12.69923 -12.56964 -12.42664 -12.32095 -11.79871 -11.66607 -11.63227 -11.52961 -10.93808 -10.88226 -9.91654 -9.91109 -9.66650 -9.15765 -9.12402 -8.81075 -8.03155 -6.41874 0.43202 0.51842 0.95196 1.27300 1.31936 1.38904 1.50961 1.53607 2.15576 2.26404 2.53666 2.84312 2.89014 3.02496 3.22690 3.63304 3.87721 3.99067 4.05723 4.08619 4.26320 4.33307 4.38165 4.42663 4.47914 4.51509 4.55422 4.61948 4.75948 4.77365 4.89677 4.95665 4.97159 5.04739 5.13308 5.26594 5.40459 5.53068 5.65160 5.66752 5.83501 5.88675 5.92208 6.06969 6.29455 6.38979 6.44621 6.82238 7.03982 7.11506 7.89722 8.36018 8.57526 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.002429 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.895209 B =11526.802992 C =12706.832064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.465 4.465 8 H 0.087 0.913 9 C 0.236 3.764 10 C -0.328 4.328 11 C -0.033 4.033 12 C -0.344 4.344 13 C 0.363 3.637 14 N -0.657 5.657 15 C 0.689 3.311 16 O -0.511 6.511 17 N -0.669 5.669 18 C 0.134 3.866 19 C 0.063 3.937 20 O -0.307 6.307 21 C 0.109 3.891 22 C -0.220 4.220 23 C -0.087 4.087 24 C -0.164 4.164 25 C -0.084 4.084 26 C -0.167 4.167 27 C 0.088 3.912 28 N -0.509 5.509 29 H 0.268 0.732 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.415 0.585 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.465 -7.135 -2.552 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.217 4.217 3 Si 0.796 3.204 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.105 0.895 9 C 0.110 3.890 10 C -0.351 4.351 11 C -0.057 4.057 12 C -0.370 4.370 13 C 0.123 3.877 14 N -0.307 5.307 15 C 0.390 3.610 16 O -0.378 6.378 17 N -0.415 5.415 18 C 0.011 3.989 19 C 0.006 3.994 20 O -0.220 6.220 21 C 0.064 3.936 22 C -0.239 4.239 23 C -0.105 4.105 24 C -0.182 4.182 25 C -0.102 4.102 26 C -0.185 4.185 27 C -0.034 4.034 28 N -0.228 5.228 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.252 0.748 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.153 0.847 42 H 0.117 0.883 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.417 -5.294 -2.349 23.153 hybrid contribution 0.890 -0.467 -0.031 1.005 sum -21.527 -5.760 -2.380 22.411 Atomic orbital electron populations 1.70550 1.07249 1.27925 1.24970 1.27084 0.96016 1.04107 0.94508 0.85379 0.78607 0.76456 0.79928 1.18300 1.20049 1.18454 1.19885 0.94479 0.90418 1.44829 0.89465 1.18898 0.87838 0.93517 0.88719 1.21817 0.99283 0.93752 1.20251 1.21031 0.93377 0.97409 0.93855 1.20893 0.95195 0.95375 1.25523 1.18832 0.83877 0.91240 0.93708 1.42296 1.03918 1.08594 1.75865 1.16040 0.80241 0.85002 0.79751 1.91389 1.62297 1.32000 1.52160 1.48853 1.02043 1.11786 1.78811 1.23105 0.81663 0.91960 1.02175 1.24454 0.79523 0.96469 0.98973 1.86129 1.15166 1.78820 1.41898 1.19291 0.87963 0.95305 0.91010 1.21487 1.01524 1.06766 0.94099 1.21283 0.92306 0.96529 1.00410 1.21437 0.97960 1.02824 0.95957 1.21312 0.98851 0.95818 0.94210 1.20714 0.90338 1.05666 1.01809 1.23871 0.82711 0.93547 1.03271 1.68626 1.07375 1.25341 1.21448 0.92081 0.87576 0.84277 0.85054 0.74810 0.89878 0.88928 0.85771 0.84583 0.83996 0.83753 0.83088 0.84714 0.88309 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.02 8.99 21.84 0.20 -40.82 16 2 C 0.01 0.47 5.50 85.29 0.47 0.94 16 3 Si 0.98 41.71 29.56 68.60 2.03 43.73 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.47 -27.06 9.14 23.47 0.21 -26.84 16 8 H 0.09 4.72 7.85 -2.91 -0.02 4.69 16 9 C 0.24 13.93 6.55 40.20 0.26 14.20 16 10 C -0.33 -16.80 9.83 22.87 0.22 -16.57 16 11 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 12 C -0.34 -14.93 9.95 22.72 0.23 -14.70 16 13 C 0.36 18.13 7.43 133.24 0.99 19.12 16 14 N -0.66 -26.77 5.38 -322.15 -1.73 -28.50 16 15 C 0.69 29.95 8.72 179.06 1.56 31.51 16 16 O -0.51 -28.28 12.83 -3.96 -0.05 -28.33 16 17 N -0.67 -20.84 3.61 -858.67 -3.10 -23.94 16 18 C 0.13 3.49 8.67 86.49 0.75 4.24 16 19 C 0.06 1.25 4.03 31.26 0.13 1.37 16 20 O -0.31 -6.29 10.16 -92.41 -0.94 -7.23 16 21 C 0.11 2.05 6.68 22.51 0.15 2.20 16 22 C -0.22 -3.63 9.10 22.36 0.20 -3.43 16 23 C -0.09 -1.20 10.04 22.25 0.22 -0.97 16 24 C -0.16 -2.00 10.04 22.28 0.22 -1.78 16 25 C -0.08 -1.07 10.04 22.25 0.22 -0.85 16 26 C -0.17 -2.74 9.99 22.37 0.22 -2.52 16 27 C 0.09 1.80 8.30 86.45 0.72 2.51 16 28 N -0.51 -30.13 5.74 -186.37 -1.07 -31.20 16 29 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 30 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 31 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16 32 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 33 H 0.42 12.69 8.32 -92.71 -0.77 11.92 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.12 2.16 5.66 -2.39 -0.01 2.15 16 37 H 0.14 1.98 5.71 -2.91 -0.02 1.96 16 38 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 42 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -79.36 366.56 2.63 -76.72 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.29 Total: 32.34 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 7.02 Total: 7.23 kcal Atomic # 7 Polarization: -118.76 SS G_CDS: -5.71 Total: -124.46 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.99 Total: -35.56 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -79.36 2.63 -76.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364466630.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.437 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds