Wall clock time and date at job start Tue Mar 31 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 120.00091 * 2 1 4 4 H 1.48500 * 109.46746 * 269.99936 * 3 2 1 5 5 H 1.48495 * 109.47209 * 29.99607 * 3 2 1 6 6 H 1.48500 * 109.47148 * 150.00059 * 3 2 1 7 7 C 1.39944 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99952 * 197.84449 * 7 2 1 9 9 C 1.41394 * 120.00364 * 17.85333 * 7 2 1 10 10 C 1.40713 * 120.24911 * 204.38550 * 9 7 2 11 11 C 1.37610 * 119.75010 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.24732 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.75099 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47767 * 89.99407 * 13 12 11 15 15 C 1.34771 * 120.00449 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99895 * 359.97438 * 15 14 13 17 17 C 1.50702 * 120.00256 * 179.97438 * 15 14 13 18 18 N 1.46494 * 109.47029 * 179.97438 * 17 15 14 19 19 C 1.34783 * 119.99898 * 180.02562 * 18 17 15 20 20 O 1.21506 * 119.99683 * 359.97438 * 19 18 17 21 21 C 1.48171 * 119.99679 * 180.02562 * 19 18 17 22 22 C 1.39315 * 119.71685 * 179.97438 * 21 19 18 23 23 C 1.38591 * 119.05594 * 179.97438 * 22 21 19 24 24 C 1.38631 * 118.48861 * 0.02562 * 23 22 21 25 25 C 1.38552 * 119.35148 * 0.25042 * 24 23 22 26 26 N 1.31529 * 120.90413 * 359.49439 * 25 24 23 27 27 C 1.38637 * 120.50543 * 0.24167 * 12 11 10 28 28 C 1.37625 * 120.23925 * 359.45757 * 27 12 11 29 29 H 0.97005 * 120.00147 * 0.02562 * 1 2 3 30 30 H 1.08010 * 120.12118 * 359.97438 * 10 9 7 31 31 H 1.07998 * 119.88020 * 179.97438 * 11 10 9 32 32 H 1.09002 * 109.46562 * 329.99118 * 13 12 11 33 33 H 1.09001 * 109.46980 * 209.99748 * 13 12 11 34 34 H 0.96998 * 119.99612 * 359.97438 * 14 13 12 35 35 H 1.09001 * 109.46584 * 59.99706 * 17 15 14 36 36 H 1.08995 * 109.46961 * 299.99633 * 17 15 14 37 37 H 0.97004 * 120.00395 * 359.97438 * 18 17 15 38 38 H 1.07995 * 120.47384 * 0.02562 * 22 21 19 39 39 H 1.08001 * 120.75708 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.31897 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.54804 * 179.75104 * 25 24 23 42 42 H 1.07998 * 119.88029 * 179.70725 * 27 12 11 43 43 H 1.08006 * 120.12456 * 180.26908 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2872 9 6 1.3520 -2.4072 -0.3743 10 6 1.8257 -3.6499 0.0855 11 6 1.1798 -4.8068 -0.2862 12 6 0.0668 -4.7511 -1.1108 13 6 -0.6317 -6.0251 -1.5113 14 7 -1.6748 -6.3390 -0.5318 15 6 -2.4341 -7.4417 -0.6858 16 8 -2.2542 -8.1740 -1.6357 17 6 -3.5068 -7.7649 0.3221 18 7 -4.1857 -9.0032 -0.0674 19 6 -5.1884 -9.4893 0.6910 20 8 -5.5288 -8.9006 1.6979 21 6 -5.8746 -10.7421 0.2973 22 6 -6.9099 -11.2395 1.0857 23 6 -7.5427 -12.4121 0.7043 24 6 -7.1175 -13.0469 -0.4524 25 6 -6.0773 -12.4982 -1.1851 26 7 -5.4974 -11.3813 -0.8029 27 6 -0.4055 -3.5329 -1.5743 28 6 0.2211 -2.3628 -1.2104 29 1 -0.4850 0.8401 -0.0004 30 1 2.6934 -3.6955 0.7270 31 1 1.5417 -5.7617 0.0652 32 1 0.0912 -6.8401 -1.5461 33 1 -1.0835 -5.8979 -2.4951 34 1 -1.8185 -5.7535 0.2282 35 1 -4.2298 -6.9500 0.3570 36 1 -3.0547 -7.8920 1.3057 37 1 -3.9142 -9.4730 -0.8715 38 1 -7.2156 -10.7184 1.9809 39 1 -8.3487 -12.8220 1.2949 40 1 -7.5894 -13.9625 -0.7768 41 1 -5.7409 -12.9923 -2.0846 42 1 -1.2706 -3.5016 -2.2200 43 1 -0.1510 -1.4144 -1.5690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365203928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:16 Heat of formation + Delta-G solvation = -22.413297 kcal Electronic energy + Delta-G solvation = -26441.061311 eV Core-core repulsion = 22450.488531 eV Total energy + Delta-G solvation = -3990.572779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94800 -39.81672 -38.84881 -37.70994 -35.02088 -34.52567 -33.50062 -32.98692 -31.87697 -30.58009 -29.41151 -28.48925 -26.57258 -24.70605 -23.88936 -23.45935 -21.12157 -20.99470 -20.45717 -20.15657 -18.80964 -17.42279 -17.17029 -16.85601 -16.27848 -16.05603 -16.02745 -15.42377 -15.27641 -15.06259 -14.93355 -14.25527 -14.11212 -13.96391 -13.68626 -13.66615 -13.52786 -13.01008 -12.74904 -12.55452 -12.40337 -12.07315 -11.92927 -11.72152 -11.20249 -11.07911 -10.77326 -10.63491 -10.48939 -10.42145 -9.98396 -9.90848 -9.70167 -9.66931 -9.51389 -9.31427 -9.26051 -8.77633 -7.60977 -7.49047 -6.89973 -4.49734 0.24749 0.78135 2.43860 2.46370 2.67607 2.74387 2.95185 3.00491 3.03809 3.06161 3.50908 3.61124 3.81071 3.83591 4.36927 4.41831 4.48910 4.54678 4.61911 4.83629 4.98692 5.21685 5.24691 5.29310 5.53892 5.56329 5.65263 5.74523 5.85023 6.09013 6.12882 6.18809 6.24094 6.30569 6.68785 6.83724 6.94778 7.14603 7.15508 7.23028 7.46238 7.47791 7.61112 7.78867 7.92595 7.94426 7.97560 8.16033 8.30443 8.50766 8.75711 8.83220 10.03962 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029769 B = 0.001609 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.343554 B =17392.793662 C =17882.055188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.117 3.883 10 C -0.229 4.229 11 C -0.069 4.069 12 C -0.249 4.249 13 C 0.185 3.815 14 N -0.710 5.710 15 C 0.501 3.499 16 O -0.548 6.548 17 C 0.095 3.905 18 N -0.695 5.695 19 C 0.572 3.428 20 O -0.534 6.534 21 C 0.081 3.919 22 C -0.111 4.111 23 C -0.083 4.083 24 C -0.151 4.151 25 C 0.099 3.901 26 N -0.456 5.456 27 C -0.081 4.081 28 C -0.169 4.169 29 H 0.283 0.717 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.405 0.595 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.423 0.577 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.164 0.836 42 H 0.088 0.912 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.301 -19.126 0.371 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.088 4.088 12 C -0.250 4.250 13 C 0.064 3.936 14 N -0.361 5.361 15 C 0.286 3.714 16 O -0.427 6.427 17 C -0.032 4.032 18 N -0.350 5.350 19 C 0.356 3.644 20 O -0.411 6.411 21 C -0.057 4.057 22 C -0.132 4.132 23 C -0.109 4.109 24 C -0.171 4.171 25 C -0.061 4.061 26 N -0.168 5.168 27 C -0.100 4.100 28 C -0.188 4.188 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.263 0.737 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.106 0.894 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.879 -18.644 -0.079 22.660 hybrid contribution -0.315 0.509 0.534 0.802 sum -13.194 -18.136 0.455 22.432 Atomic orbital electron populations 1.69816 1.07655 1.29523 1.34107 1.25957 0.94763 1.01516 0.92096 0.86277 0.80518 0.80336 0.79452 1.19152 1.20214 1.18514 1.19683 0.98254 0.91268 1.39427 0.90216 1.17682 0.90875 0.92074 0.87995 1.20975 1.03978 0.92799 1.07156 1.20404 0.95088 0.96525 0.96761 1.18962 1.02209 0.92657 1.11212 1.19995 0.87873 0.95281 0.90489 1.46478 1.35527 1.24930 1.29119 1.20435 0.82684 0.81759 0.86498 1.90684 1.70065 1.49623 1.32322 1.21186 0.95148 0.88447 0.98407 1.45545 1.34637 1.25478 1.29305 1.17841 0.79792 0.83635 0.83129 1.90802 1.65231 1.59488 1.25579 1.21088 0.96012 0.95811 0.92816 1.22157 0.94619 0.95953 1.00474 1.21659 0.98871 0.94223 0.96100 1.22422 0.97841 1.01164 0.95695 1.22857 0.92584 0.91312 0.99311 1.67596 1.27448 1.08142 1.13572 1.20563 0.98043 0.92558 0.98805 1.21316 0.99532 0.96777 1.01211 0.90645 0.88871 0.89347 0.92206 0.92150 0.76041 0.88035 0.88058 0.73717 0.83263 0.83947 0.84109 0.81850 0.89363 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.40 10.95 55.55 0.61 -18.79 16 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 17.90 29.60 -169.99 -5.03 12.87 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.60 9.05 -37.74 -0.34 -11.94 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.12 2.95 5.57 -106.83 -0.60 2.35 16 10 C -0.23 -5.32 9.80 -38.88 -0.38 -5.70 16 11 C -0.07 -1.43 9.67 -39.67 -0.38 -1.82 16 12 C -0.25 -4.97 5.27 -104.33 -0.55 -5.52 16 13 C 0.19 3.18 5.79 -5.19 -0.03 3.15 16 14 N -0.71 -10.61 5.55 -61.47 -0.34 -10.95 16 15 C 0.50 7.35 7.90 -10.99 -0.09 7.26 16 16 O -0.55 -9.64 15.67 5.56 0.09 -9.56 16 17 C 0.10 1.16 6.15 -5.20 -0.03 1.13 16 18 N -0.70 -8.92 5.52 -62.33 -0.34 -9.27 16 19 C 0.57 7.47 7.81 -12.18 -0.10 7.37 16 20 O -0.53 -8.04 16.32 5.36 0.09 -7.95 16 21 C 0.08 0.90 6.75 -83.01 -0.56 0.34 16 22 C -0.11 -0.97 9.63 -39.05 -0.38 -1.35 16 23 C -0.08 -0.49 10.17 -39.31 -0.40 -0.89 16 24 C -0.15 -0.82 10.11 -39.32 -0.40 -1.21 16 25 C 0.10 0.72 11.18 -17.57 -0.20 0.52 16 26 N -0.46 -4.82 9.54 -9.80 -0.09 -4.91 16 27 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 28 C -0.17 -4.14 8.70 -38.87 -0.34 -4.48 16 29 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 30 H 0.09 2.05 8.06 -52.48 -0.42 1.62 16 31 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 33 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.40 5.59 8.46 -40.82 -0.35 5.24 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.42 5.64 6.77 -40.82 -0.28 5.37 16 38 H 0.15 1.22 7.64 -52.49 -0.40 0.82 16 39 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 41 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.12 3.02 6.16 -52.48 -0.32 2.70 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -30.05 378.86 -9.67 -39.72 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -5.12 Total: 14.30 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -5.24 Total: -11.18 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.17 Total: -43.91 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.17 Total: -17.51 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.05 -9.67 -39.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365203928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.305 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds