Wall clock time and date at job start Tue Mar 31 2020 22:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46924 * 240.00355 * 3 2 1 5 5 H 1.48501 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47153 * 120.00234 * 3 2 1 7 7 C 1.39944 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00197 * 191.02914 * 7 2 1 9 9 C 1.41399 * 120.00361 * 11.02958 * 7 2 1 10 10 C 1.40716 * 120.24752 * 208.06614 * 9 7 2 11 11 C 1.37620 * 119.74471 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24791 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.75011 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.47091 * 89.99757 * 13 12 11 15 15 C 1.34777 * 120.00262 * 180.02562 * 14 13 12 16 16 O 1.21593 * 119.99959 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00187 * 179.97438 * 15 14 13 18 18 C 1.39969 * 119.99985 * 185.18896 * 17 15 14 19 19 C 1.38986 * 120.00271 * 213.38860 * 18 17 15 20 20 C 1.38207 * 120.22533 * 179.72479 * 19 18 17 21 21 C 1.38023 * 120.22504 * 0.55741 * 20 19 18 22 22 C 1.39574 * 119.99097 * 359.72101 * 21 20 19 23 23 C 1.47858 * 120.11052 * 179.97438 * 22 21 20 24 24 N 1.34775 * 119.99870 * 0.02562 * 23 22 21 25 25 O 1.21553 * 119.99953 * 180.02562 * 23 22 21 26 26 C 1.38588 * 120.00083 * 33.67175 * 18 17 15 27 27 C 1.38639 * 120.50050 * 0.24896 * 12 11 10 28 28 C 1.37614 * 120.24836 * 359.45361 * 27 12 11 29 29 H 0.96991 * 119.99757 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.12720 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.87701 * 179.97438 * 11 10 9 32 32 H 1.08993 * 109.47520 * 209.99723 * 13 12 11 33 33 H 1.08999 * 109.47168 * 330.00216 * 13 12 11 34 34 H 0.97004 * 119.99706 * 0.02562 * 14 13 12 35 35 H 0.97001 * 120.00001 * 5.19605 * 17 15 14 36 36 H 1.08004 * 119.88269 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.89026 * 180.27943 * 20 19 18 38 38 H 1.07997 * 120.00155 * 179.74966 * 21 20 19 39 39 H 0.96998 * 120.00561 * 0.02562 * 24 23 22 40 40 H 0.97008 * 119.99703 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.11100 * 359.97099 * 26 18 17 42 42 H 1.07995 * 119.87048 * 179.70340 * 27 12 11 43 43 H 1.07998 * 120.12712 * 180.27439 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0730 -1.2205 0.1795 9 6 1.3207 -2.4253 -0.2332 10 6 1.8018 -3.6292 0.3139 11 6 1.1249 -4.8043 0.0794 12 6 -0.0264 -4.8050 -0.6929 13 6 -0.7583 -6.0982 -0.9431 14 7 -1.7560 -6.3062 0.1094 15 6 -2.5349 -7.4060 0.0920 16 8 -2.4092 -8.2259 -0.7971 17 7 -3.4523 -7.5975 1.0605 18 6 -4.1853 -8.7891 1.1044 19 6 -5.4999 -8.7801 1.5556 20 6 -6.2297 -9.9531 1.5955 21 6 -5.6545 -11.1432 1.1983 22 6 -4.3332 -11.1638 0.7490 23 6 -3.7142 -12.4373 0.3235 24 7 -4.4261 -13.5808 0.3686 25 8 -2.5632 -12.4529 -0.0670 26 6 -3.5985 -9.9788 0.7034 27 6 -0.5063 -3.6257 -1.2416 28 6 0.1509 -2.4379 -1.0152 29 1 -0.4849 0.8400 0.0004 30 1 2.6991 -3.6312 0.9148 31 1 1.4925 -5.7296 0.4979 32 1 -1.2562 -6.0526 -1.9116 33 1 -0.0477 -6.9247 -0.9384 34 1 -1.8560 -5.6522 0.8189 35 1 -3.6047 -6.9095 1.7271 36 1 -5.9538 -7.8527 1.8723 37 1 -7.2523 -9.9392 1.9428 38 1 -6.2269 -12.0583 1.2348 39 1 -5.3447 -13.5683 0.6798 40 1 -4.0201 -14.4163 0.0890 41 1 -2.5758 -9.9885 0.3563 42 1 -1.4014 -3.6386 -1.8456 43 1 -0.2272 -1.5198 -1.4399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365478042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:42 Heat of formation + Delta-G solvation = -24.367947 kcal Electronic energy + Delta-G solvation = -26936.663838 eV Core-core repulsion = 22946.006298 eV Total energy + Delta-G solvation = -3990.657539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.79281 -39.75710 -38.31583 -37.67139 -35.08893 -34.61237 -33.89542 -33.43497 -31.25785 -30.62056 -29.48954 -29.26964 -26.77667 -24.47291 -23.98568 -22.74845 -21.10691 -20.96312 -20.64570 -20.12728 -18.71910 -18.25409 -17.40262 -17.24024 -16.45892 -16.29398 -15.55760 -15.39010 -15.00008 -14.90376 -14.74145 -14.32597 -14.07731 -13.95437 -13.90223 -13.63826 -13.40943 -12.90557 -12.52713 -12.20701 -12.08478 -12.02609 -11.78719 -11.71143 -11.17121 -11.07074 -10.75283 -10.57471 -10.46339 -10.24950 -10.06989 -9.97683 -9.73586 -9.48692 -9.30867 -9.19103 -8.79205 -8.23483 -7.59931 -7.44006 -6.83260 -4.50463 0.60286 1.13353 2.39085 2.62554 2.82379 2.95777 3.00730 3.03441 3.12768 3.23003 3.28650 3.72684 3.85201 4.29738 4.50632 4.56152 4.63518 4.78039 4.93925 5.20600 5.26560 5.56419 5.60305 5.73856 5.90103 5.98606 6.03735 6.13742 6.20172 6.23234 6.26880 6.32941 6.50816 6.76629 6.79993 6.84398 6.96308 6.97561 7.05286 7.15765 7.25143 7.49589 7.69921 7.93989 7.98199 8.01895 8.08818 8.17960 8.52361 8.64693 8.77618 8.83968 10.09805 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027046 B = 0.001825 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.026005 B =15335.580021 C =16020.143379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.116 3.884 10 C -0.226 4.226 11 C -0.071 4.071 12 C -0.241 4.241 13 C 0.200 3.800 14 N -0.726 5.726 15 C 0.695 3.305 16 O -0.577 6.577 17 N -0.692 5.692 18 C 0.171 3.829 19 C -0.126 4.126 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.121 4.121 23 C 0.563 3.437 24 N -0.853 5.853 25 O -0.531 6.531 26 C -0.062 4.062 27 C -0.083 4.083 28 C -0.163 4.163 29 H 0.282 0.718 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.399 0.601 35 H 0.408 0.592 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.400 0.600 40 H 0.404 0.596 41 H 0.152 0.848 42 H 0.089 0.911 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.641 -16.306 5.553 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.113 3.887 10 C -0.245 4.245 11 C -0.090 4.090 12 C -0.243 4.243 13 C 0.079 3.921 14 N -0.380 5.380 15 C 0.395 3.605 16 O -0.454 6.454 17 N -0.340 5.340 18 C 0.075 3.925 19 C -0.148 4.148 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.125 4.125 23 C 0.349 3.651 24 N -0.418 5.418 25 O -0.407 6.407 26 C -0.083 4.083 27 C -0.102 4.102 28 C -0.183 4.183 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.233 0.767 35 H 0.244 0.756 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.229 0.771 40 H 0.235 0.765 41 H 0.170 0.830 42 H 0.107 0.893 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.855 -16.628 4.470 22.100 hybrid contribution -0.207 1.205 0.806 1.465 sum -14.062 -15.422 5.276 21.527 Atomic orbital electron populations 1.69772 1.07489 1.29348 1.35603 1.25933 0.94876 1.01392 0.92260 0.86289 0.80012 0.79968 0.80010 1.18791 1.20285 1.18975 1.19627 0.96080 0.90560 1.42508 0.90386 1.17701 0.91316 0.92072 0.87603 1.21034 1.03070 0.93337 1.07101 1.20435 0.94853 0.96483 0.97261 1.19007 1.00667 0.93177 1.11460 1.19896 0.88122 0.95584 0.88540 1.45786 1.38372 1.22597 1.31211 1.16133 0.79347 0.83154 0.81820 1.90959 1.71777 1.45517 1.37127 1.42759 1.40653 1.18568 1.31994 1.17417 0.90419 0.85334 0.99297 1.21102 0.91776 0.99401 1.02494 1.20819 0.99870 0.91676 1.00117 1.21160 0.93922 0.98493 0.99621 1.19696 0.94949 0.93424 1.04462 1.18292 0.85601 0.84086 0.77157 1.43733 1.17581 1.10108 1.70353 1.90862 1.17291 1.86572 1.46000 1.21366 1.01554 0.89110 0.96275 1.20595 0.98044 0.92711 0.98862 1.21387 0.98736 0.96538 1.01590 0.90753 0.88824 0.89254 0.92251 0.92223 0.76697 0.75579 0.85130 0.85030 0.85750 0.77079 0.76499 0.83042 0.89317 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.70 10.81 55.55 0.60 -19.10 16 2 C 0.07 1.76 5.25 -17.34 -0.09 1.66 16 3 Si 0.91 18.04 29.57 -169.99 -5.03 13.01 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.66 9.07 -37.74 -0.34 -12.00 16 8 H 0.08 1.91 7.87 -52.49 -0.41 1.50 16 9 C 0.12 2.94 5.56 -106.82 -0.59 2.35 16 10 C -0.23 -5.26 9.80 -38.87 -0.38 -5.64 16 11 C -0.07 -1.50 9.67 -39.66 -0.38 -1.89 16 12 C -0.24 -4.89 5.27 -104.33 -0.55 -5.44 16 13 C 0.20 3.59 5.79 -5.19 -0.03 3.56 16 14 N -0.73 -11.35 5.55 -66.42 -0.37 -11.72 16 15 C 0.69 11.12 8.30 -86.92 -0.72 10.40 16 16 O -0.58 -11.43 14.04 5.28 0.07 -11.36 16 17 N -0.69 -8.38 5.35 -14.26 -0.08 -8.45 16 18 C 0.17 2.07 6.27 -83.73 -0.52 1.55 16 19 C -0.13 -1.11 9.95 -39.32 -0.39 -1.51 16 20 C -0.11 -0.77 10.02 -39.67 -0.40 -1.17 16 21 C -0.11 -0.87 9.54 -39.16 -0.37 -1.24 16 22 C -0.12 -1.39 5.87 -104.99 -0.62 -2.01 16 23 C 0.56 6.78 8.05 -12.32 -0.10 6.68 16 24 N -0.85 -5.70 8.82 30.53 0.27 -5.43 16 25 O -0.53 -8.98 17.18 5.32 0.09 -8.89 16 26 C -0.06 -0.87 8.20 -38.98 -0.32 -1.19 16 27 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 28 C -0.16 -4.02 8.67 -38.87 -0.34 -4.35 16 29 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 30 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 33 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.40 5.61 8.48 -40.82 -0.35 5.26 16 35 H 0.41 3.59 8.83 -40.82 -0.36 3.23 16 36 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 37 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.12 0.50 6.40 -52.49 -0.34 0.16 16 39 H 0.40 1.34 6.86 -40.82 -0.28 1.06 16 40 H 0.40 2.19 8.93 -40.82 -0.36 1.83 16 41 H 0.15 2.67 6.02 -52.48 -0.32 2.35 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.12 3.11 6.18 -52.49 -0.32 2.79 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -32.72 371.90 -10.20 -42.91 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -4.83 Total: 15.84 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -6.54 Total: -12.43 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.42 Total: -44.70 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.17 Total: -20.25 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.72 -10.20 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365478042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.546 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds