Wall clock time and date at job start Tue Mar 31 2020 22:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48501 * 109.46924 * 240.00355 * 3 2 1 5 5 H 1.48501 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47153 * 120.00234 * 3 2 1 7 7 C 1.39944 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00197 * 191.02914 * 7 2 1 9 9 C 1.41399 * 120.00361 * 11.02958 * 7 2 1 10 10 C 1.40716 * 120.24752 * 208.06614 * 9 7 2 11 11 C 1.37620 * 119.74471 * 180.02562 * 10 9 7 12 12 C 1.38638 * 120.24791 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.75011 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.47091 * 89.99757 * 13 12 11 15 15 C 1.34777 * 120.00262 * 180.02562 * 14 13 12 16 16 O 1.21593 * 119.99959 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00187 * 179.97438 * 15 14 13 18 18 C 1.39969 * 119.99985 * 185.18896 * 17 15 14 19 19 C 1.38986 * 120.00271 * 213.38860 * 18 17 15 20 20 C 1.38207 * 120.22533 * 179.72479 * 19 18 17 21 21 C 1.38023 * 120.22504 * 0.55741 * 20 19 18 22 22 C 1.39574 * 119.99097 * 359.72101 * 21 20 19 23 23 C 1.47858 * 120.11052 * 179.97438 * 22 21 20 24 24 N 1.34775 * 119.99870 * 0.02562 * 23 22 21 25 25 O 1.21553 * 119.99953 * 180.02562 * 23 22 21 26 26 C 1.38588 * 120.00083 * 33.67175 * 18 17 15 27 27 C 1.38639 * 120.50050 * 0.24896 * 12 11 10 28 28 C 1.37614 * 120.24836 * 359.45361 * 27 12 11 29 29 H 0.96991 * 119.99757 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.12720 * 359.97438 * 10 9 7 31 31 H 1.07995 * 119.87701 * 179.97438 * 11 10 9 32 32 H 1.08993 * 109.47520 * 209.99723 * 13 12 11 33 33 H 1.08999 * 109.47168 * 330.00216 * 13 12 11 34 34 H 0.97004 * 119.99706 * 0.02562 * 14 13 12 35 35 H 0.97001 * 120.00001 * 5.19605 * 17 15 14 36 36 H 1.08004 * 119.88269 * 359.97438 * 19 18 17 37 37 H 1.08004 * 119.89026 * 180.27943 * 20 19 18 38 38 H 1.07997 * 120.00155 * 179.74966 * 21 20 19 39 39 H 0.96998 * 120.00561 * 0.02562 * 24 23 22 40 40 H 0.97008 * 119.99703 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.11100 * 359.97099 * 26 18 17 42 42 H 1.07995 * 119.87048 * 179.70340 * 27 12 11 43 43 H 1.07998 * 120.12712 * 180.27439 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2126 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0730 -1.2205 0.1795 9 6 1.3207 -2.4253 -0.2332 10 6 1.8018 -3.6292 0.3139 11 6 1.1249 -4.8043 0.0794 12 6 -0.0264 -4.8050 -0.6929 13 6 -0.7583 -6.0982 -0.9431 14 7 -1.7560 -6.3062 0.1094 15 6 -2.5349 -7.4060 0.0920 16 8 -2.4092 -8.2259 -0.7971 17 7 -3.4523 -7.5975 1.0605 18 6 -4.1853 -8.7891 1.1044 19 6 -5.4999 -8.7801 1.5556 20 6 -6.2297 -9.9531 1.5955 21 6 -5.6545 -11.1432 1.1983 22 6 -4.3332 -11.1638 0.7490 23 6 -3.7142 -12.4373 0.3235 24 7 -4.4261 -13.5808 0.3686 25 8 -2.5632 -12.4529 -0.0670 26 6 -3.5985 -9.9788 0.7034 27 6 -0.5063 -3.6257 -1.2416 28 6 0.1509 -2.4379 -1.0152 29 1 -0.4849 0.8400 0.0004 30 1 2.6991 -3.6312 0.9148 31 1 1.4925 -5.7296 0.4979 32 1 -1.2562 -6.0526 -1.9116 33 1 -0.0477 -6.9247 -0.9384 34 1 -1.8560 -5.6522 0.8189 35 1 -3.6047 -6.9095 1.7271 36 1 -5.9538 -7.8527 1.8723 37 1 -7.2523 -9.9392 1.9428 38 1 -6.2269 -12.0583 1.2348 39 1 -5.3447 -13.5683 0.6798 40 1 -4.0201 -14.4163 0.0890 41 1 -2.5758 -9.9885 0.3563 42 1 -1.4014 -3.6386 -1.8456 43 1 -0.2272 -1.5198 -1.4399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365478042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:41 Heat of formation + Delta-G solvation = -48.335816 kcal Electronic energy + Delta-G solvation = -26937.703163 eV Core-core repulsion = 22946.006298 eV Total energy + Delta-G solvation = -3991.696864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81813 -40.79084 -39.64225 -39.03255 -36.44217 -35.86660 -35.13211 -34.69254 -32.18974 -32.01377 -31.20851 -30.41327 -28.38951 -25.56263 -25.27648 -23.76818 -22.90780 -21.96356 -21.84876 -21.62919 -19.67408 -19.32852 -19.23658 -18.08539 -17.41994 -17.18323 -17.05942 -16.66286 -16.19391 -16.11831 -15.87359 -15.65812 -15.56035 -15.24316 -14.95339 -14.92080 -14.55365 -14.20021 -13.89441 -13.82345 -13.57824 -13.41292 -12.83776 -12.80371 -12.73839 -12.64836 -12.50067 -12.10888 -11.62414 -11.53898 -11.32127 -11.29120 -11.18703 -11.06510 -10.76483 -10.14822 -9.95283 -9.41170 -9.26613 -9.13494 -8.62142 -6.39830 -0.17698 0.34047 0.78905 1.11812 1.38789 1.44304 1.50129 1.69671 1.78226 2.07783 2.20528 2.49750 2.72029 2.90537 3.25831 3.72567 3.84432 3.94699 4.10882 4.15392 4.22727 4.29561 4.45308 4.49922 4.52919 4.64618 4.74565 4.91343 5.03488 5.14481 5.22929 5.28862 5.33230 5.34570 5.41360 5.43334 5.48362 5.68002 5.83676 5.84719 5.96019 5.98573 6.08273 6.18145 6.35251 6.42031 6.67228 6.91652 6.93945 6.99288 7.28290 7.42863 8.33013 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027046 B = 0.001825 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.026005 B =15335.580021 C =16020.143379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.033 3.967 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.496 4.496 8 H 0.075 0.925 9 C 0.085 3.915 10 C -0.239 4.239 11 C -0.070 4.070 12 C -0.222 4.222 13 C 0.211 3.789 14 N -0.720 5.720 15 C 0.695 3.305 16 O -0.618 6.618 17 N -0.676 5.676 18 C 0.143 3.857 19 C -0.114 4.114 20 C -0.096 4.096 21 C -0.092 4.092 22 C -0.140 4.140 23 C 0.556 3.444 24 N -0.823 5.823 25 O -0.596 6.596 26 C -0.097 4.097 27 C -0.082 4.082 28 C -0.184 4.184 29 H 0.288 0.712 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.408 0.592 35 H 0.425 0.575 36 H 0.161 0.839 37 H 0.178 0.822 38 H 0.170 0.830 39 H 0.420 0.580 40 H 0.413 0.587 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.006 -17.283 7.030 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.526 4.526 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.258 4.258 11 C -0.089 4.089 12 C -0.223 4.223 13 C 0.088 3.912 14 N -0.375 5.375 15 C 0.396 3.604 16 O -0.499 6.499 17 N -0.325 5.325 18 C 0.048 3.952 19 C -0.134 4.134 20 C -0.114 4.114 21 C -0.111 4.111 22 C -0.144 4.144 23 C 0.342 3.658 24 N -0.388 5.388 25 O -0.478 6.478 26 C -0.119 4.119 27 C -0.101 4.101 28 C -0.204 4.204 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.264 0.736 36 H 0.178 0.822 37 H 0.195 0.805 38 H 0.187 0.813 39 H 0.253 0.747 40 H 0.245 0.755 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.309 -17.645 6.008 25.437 hybrid contribution 0.652 1.258 0.383 1.467 sum -16.657 -16.387 6.391 24.225 Atomic orbital electron populations 1.69827 1.08733 1.30509 1.36138 1.26734 0.95662 1.04384 0.91352 0.85229 0.78706 0.75701 0.79951 1.18648 1.19173 1.18484 1.19863 0.96247 0.91764 1.44719 0.90646 1.18033 0.92143 0.93056 0.88524 1.21206 1.03625 0.93584 1.07411 1.20688 0.94631 0.96728 0.96854 1.19175 1.00076 0.93550 1.09536 1.19641 0.88410 0.94017 0.89165 1.45429 1.38072 1.23012 1.30980 1.16202 0.79744 0.82389 0.82095 1.90944 1.73025 1.46774 1.39109 1.42481 1.39600 1.19232 1.31229 1.17651 0.91961 0.84279 1.01280 1.21501 0.89991 1.01556 1.00393 1.21404 1.01480 0.90416 0.98091 1.21650 0.91984 1.00841 0.96662 1.19774 0.96631 0.92167 1.05837 1.18593 0.85059 0.85544 0.76569 1.43479 1.18083 1.08919 1.68318 1.90827 1.20133 1.87537 1.49257 1.21142 1.00190 0.91555 0.98988 1.20774 0.98316 0.92304 0.98721 1.21331 0.99467 0.96926 1.02665 0.90136 0.88319 0.86827 0.92469 0.92461 0.75585 0.73633 0.82189 0.80472 0.81301 0.74698 0.75514 0.87979 0.87582 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.86 10.81 21.83 0.24 -41.62 16 2 C 0.03 1.63 5.25 85.26 0.45 2.08 16 3 Si 0.98 37.39 29.57 68.60 2.03 39.42 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 7 C -0.50 -26.16 9.07 23.46 0.21 -25.95 16 8 H 0.08 3.84 7.87 -2.91 -0.02 3.82 16 9 C 0.08 4.46 5.56 -21.29 -0.12 4.34 16 10 C -0.24 -11.33 9.80 22.73 0.22 -11.11 16 11 C -0.07 -2.94 9.67 22.22 0.21 -2.73 16 12 C -0.22 -8.93 5.27 -19.67 -0.10 -9.03 16 13 C 0.21 7.52 5.79 85.63 0.50 8.02 16 14 N -0.72 -22.34 5.55 -482.30 -2.68 -25.02 16 15 C 0.70 22.60 8.30 179.05 1.49 24.09 16 16 O -0.62 -25.69 14.04 -4.01 -0.06 -25.74 16 17 N -0.68 -16.05 5.35 -317.27 -1.70 -17.75 16 18 C 0.14 3.36 6.27 38.10 0.24 3.60 16 19 C -0.11 -1.59 9.95 22.44 0.22 -1.37 16 20 C -0.10 -0.88 10.02 22.21 0.22 -0.66 16 21 C -0.09 -1.04 9.54 22.54 0.21 -0.83 16 22 C -0.14 -3.13 5.87 -20.10 -0.12 -3.24 16 23 C 0.56 13.49 8.05 86.79 0.70 14.19 16 24 N -0.82 -9.40 8.82 -175.59 -1.55 -10.95 16 25 O -0.60 -21.65 17.18 -3.88 -0.07 -21.71 16 26 C -0.10 -2.86 8.20 22.66 0.19 -2.67 16 27 C -0.08 -3.62 9.67 22.22 0.21 -3.40 16 28 C -0.18 -9.36 8.67 22.73 0.20 -9.16 16 29 H 0.29 13.23 8.30 -92.72 -0.77 12.46 16 30 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 31 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 32 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 34 H 0.41 11.13 8.48 -92.71 -0.79 10.35 16 35 H 0.42 6.84 8.83 -92.71 -0.82 6.02 16 36 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 38 H 0.17 0.32 6.40 -2.91 -0.02 0.30 16 39 H 0.42 1.21 6.86 -92.71 -0.64 0.57 16 40 H 0.41 3.82 8.93 -92.70 -0.83 2.99 16 41 H 0.10 4.01 6.02 -2.91 -0.02 3.99 16 42 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 43 H 0.10 5.59 6.18 -2.91 -0.02 5.57 16 Total: -1.00 -78.93 371.90 -0.80 -79.73 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -1.95 Total: 37.48 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 4.94 Total: -13.83 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -5.69 Total: -95.34 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -0.12 Total: -47.45 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -78.93 -0.80 -79.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365478042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.394 kcal (2) G-P(sol) polarization free energy of solvation -78.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds