Wall clock time and date at job start Tue Mar 31 2020 22:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 119.99796 * 2 1 4 4 H 1.48497 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47190 * 300.00362 * 3 2 1 6 6 H 1.48497 * 109.47123 * 59.99848 * 3 2 1 7 7 C 1.39926 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99810 * 196.79122 * 7 2 1 9 9 C 1.41410 * 120.00431 * 16.79444 * 7 2 1 10 10 C 1.40776 * 120.20586 * 25.15757 * 9 7 2 11 11 C 1.37641 * 119.88194 * 180.02562 * 10 9 7 12 12 C 1.38535 * 120.32340 * 0.02562 * 11 10 9 13 13 C 1.39241 * 120.42601 * 359.96312 * 12 11 10 14 14 N 1.39959 * 119.94484 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99834 * 145.77316 * 14 13 12 16 16 O 1.21595 * 120.00135 * 354.84750 * 15 14 13 17 17 N 1.34775 * 120.00186 * 174.84821 * 15 14 13 18 18 C 1.46506 * 120.00449 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47013 * 179.97438 * 18 17 15 20 20 C 1.38355 * 119.85332 * 269.73036 * 19 18 17 21 21 C 1.37959 * 120.14389 * 179.72900 * 20 19 18 22 22 C 1.39580 * 119.85082 * 0.54352 * 21 20 19 23 23 C 1.47842 * 120.14612 * 179.70296 * 22 21 20 24 24 N 1.34781 * 119.99816 * 0.02975 * 23 22 21 25 25 O 1.21546 * 120.00165 * 180.02562 * 23 22 21 26 26 C 1.39575 * 119.70938 * 359.72795 * 22 21 20 27 27 C 1.37960 * 119.85527 * 0.02562 * 26 22 21 28 28 C 1.38273 * 120.10980 * 0.26916 * 13 12 11 29 29 H 0.97001 * 120.00817 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.06370 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.84008 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.78806 * 179.97438 * 12 11 10 33 33 H 0.96992 * 119.99854 * 325.77372 * 14 13 12 34 34 H 0.97004 * 119.99920 * 0.02562 * 17 15 14 35 35 H 1.09007 * 109.46575 * 59.99924 * 18 17 15 36 36 H 1.08998 * 109.46754 * 300.00364 * 18 17 15 37 37 H 1.08005 * 119.92696 * 359.97438 * 20 19 18 38 38 H 1.07998 * 120.07808 * 180.24941 * 21 20 19 39 39 H 0.96995 * 119.99936 * 359.97438 * 24 23 22 40 40 H 0.97002 * 120.00225 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.07163 * 179.97438 * 26 22 21 42 42 H 1.07999 * 119.92902 * 179.97438 * 27 26 22 43 43 H 1.07996 * 120.16649 * 179.74466 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2318 0.2697 9 6 1.3462 -2.4102 -0.3549 10 6 0.2108 -2.3732 -1.1864 11 6 -0.4284 -3.5437 -1.5267 12 6 0.0397 -4.7591 -1.0545 13 6 1.1616 -4.8110 -0.2315 14 7 1.6255 -6.0443 0.2403 15 6 2.9471 -6.2471 0.4097 16 8 3.7422 -5.3941 0.0651 17 7 3.3875 -7.3954 0.9610 18 6 4.8242 -7.6161 1.1446 19 6 5.0483 -8.9658 1.7765 20 6 5.0938 -9.0822 3.1544 21 6 5.2930 -10.3156 3.7393 22 6 5.4602 -11.4459 2.9375 23 6 5.6807 -12.7699 3.5572 24 7 5.7200 -12.8875 4.8993 25 8 5.8264 -13.7523 2.8565 26 6 5.4188 -11.3205 1.5480 27 6 5.2138 -10.0820 0.9759 28 6 1.8146 -3.6456 0.1254 29 1 -0.4851 0.8400 0.0004 30 1 -0.1580 -1.4281 -1.5566 31 1 -1.2991 -3.5145 -2.1649 32 1 -0.4688 -5.6722 -1.3266 33 1 0.9959 -6.7531 0.4452 34 1 2.7533 -8.0761 1.2355 35 1 5.2310 -6.8398 1.7927 36 1 5.3239 -7.5801 0.1766 37 1 4.9691 -8.2060 3.7735 38 1 5.3243 -10.4059 4.8150 39 1 5.6040 -12.1035 5.4585 40 1 5.8650 -13.7562 5.3060 41 1 5.5479 -12.1911 0.9220 42 1 5.1820 -9.9836 -0.0991 43 1 2.6825 -3.6845 0.7670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365501097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:46 Heat of formation + Delta-G solvation = -20.292379 kcal Electronic energy + Delta-G solvation = -26793.425579 eV Core-core repulsion = 22802.944769 eV Total energy + Delta-G solvation = -3990.480810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63513 -39.92175 -38.78560 -37.31908 -35.04804 -34.36881 -34.20472 -33.02355 -31.58038 -31.36536 -29.78179 -28.24239 -26.50802 -25.24859 -23.22195 -23.12705 -21.63855 -20.85062 -20.79553 -20.06461 -18.71135 -18.09038 -17.68084 -17.32447 -16.14694 -15.74329 -15.48723 -15.34306 -15.30976 -15.17702 -14.77401 -14.63092 -14.38459 -14.13454 -13.90835 -13.57615 -13.18424 -12.95734 -12.82237 -12.66945 -12.12389 -11.89404 -11.62703 -11.50957 -11.16845 -11.09730 -10.89276 -10.54551 -10.42878 -10.22373 -10.20579 -9.72127 -9.53846 -9.45778 -9.31502 -9.10352 -8.98587 -8.94836 -7.40898 -6.86314 -6.67469 -4.30041 0.28362 0.91318 2.32577 2.75469 2.90523 2.99908 3.06969 3.11727 3.18676 3.23433 3.47744 3.71616 3.99182 4.18475 4.28957 4.41895 4.53500 4.59758 4.68721 4.88107 4.92042 5.23994 5.36704 5.57196 5.59961 5.75800 5.77004 5.84828 6.12904 6.25489 6.26919 6.38943 6.43082 6.48460 6.78772 6.80731 6.81570 7.07814 7.12448 7.27434 7.37102 7.71762 7.74814 7.85378 8.03116 8.14670 8.27879 8.44659 8.70113 8.92577 9.00685 9.06148 10.24975 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.001821 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.969936 B =15375.131919 C =16055.322843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.457 4.457 8 H 0.078 0.922 9 C 0.119 3.881 10 C -0.172 4.172 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.168 3.832 14 N -0.680 5.680 15 C 0.699 3.301 16 O -0.565 6.565 17 N -0.748 5.748 18 C 0.176 3.824 19 C -0.074 4.074 20 C -0.107 4.107 21 C -0.088 4.088 22 C -0.138 4.138 23 C 0.564 3.436 24 N -0.851 5.851 25 O -0.540 6.540 26 C -0.060 4.060 27 C -0.107 4.107 28 C -0.209 4.209 29 H 0.279 0.721 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.394 0.606 34 H 0.394 0.606 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.402 0.598 40 H 0.405 0.595 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 -19.803 9.382 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.487 4.487 8 H 0.096 0.904 9 C 0.116 3.884 10 C -0.192 4.192 11 C -0.111 4.111 12 C -0.284 4.284 13 C 0.076 3.924 14 N -0.327 5.327 15 C 0.399 3.601 16 O -0.440 6.440 17 N -0.406 5.406 18 C 0.052 3.948 19 C -0.075 4.075 20 C -0.125 4.125 21 C -0.107 4.107 22 C -0.141 4.141 23 C 0.350 3.650 24 N -0.415 5.415 25 O -0.418 6.418 26 C -0.079 4.079 27 C -0.125 4.125 28 C -0.231 4.231 29 H 0.089 0.911 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.227 0.773 34 H 0.227 0.773 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.231 0.769 40 H 0.236 0.764 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.217 -19.359 8.498 22.683 hybrid contribution -0.348 0.042 0.842 0.912 sum 7.868 -19.316 9.340 22.853 Atomic orbital electron populations 1.69835 1.07516 1.28947 1.35908 1.25896 0.94728 1.01246 0.92306 0.86281 0.81128 0.80992 0.78440 1.18367 1.19747 1.20090 1.19606 0.97780 0.90929 1.40398 0.90352 1.17502 0.90885 0.91657 0.88336 1.21335 0.99398 0.96834 1.01649 1.20445 0.98528 0.92683 0.99471 1.20010 1.02611 0.96873 1.08951 1.17224 0.95882 0.82580 0.96687 1.42572 1.05213 1.15833 1.69039 1.15945 0.83021 0.82132 0.78989 1.90992 1.54147 1.43819 1.55042 1.45107 1.07360 1.19686 1.68439 1.20043 0.81444 0.92273 1.01002 1.20228 0.98167 0.95266 0.93809 1.21117 0.99332 0.97729 0.94346 1.21273 0.97931 0.92007 0.99445 1.19921 1.06531 0.92908 0.94748 1.18321 0.75628 0.88642 0.82398 1.43767 1.76361 1.14307 1.07098 1.90827 1.49548 1.39274 1.62124 1.21299 0.95034 0.98086 0.93477 1.21185 0.99179 0.91527 1.00637 1.20985 1.04312 0.90882 1.06919 0.91055 0.86357 0.89080 0.89380 0.77264 0.77282 0.90332 0.90397 0.84774 0.85443 0.76870 0.76362 0.84413 0.84734 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.81 10.94 55.55 0.61 -20.21 16 2 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 3 Si 0.91 19.16 29.59 -169.99 -5.03 14.13 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.46 -12.62 9.05 -37.74 -0.34 -12.96 16 8 H 0.08 2.14 7.90 -52.49 -0.41 1.72 16 9 C 0.12 3.30 5.57 -106.85 -0.59 2.71 16 10 C -0.17 -4.55 8.69 -38.84 -0.34 -4.89 16 11 C -0.09 -2.16 10.02 -39.69 -0.40 -2.56 16 12 C -0.26 -5.80 9.97 -39.10 -0.39 -6.19 16 13 C 0.17 3.83 6.25 -83.76 -0.52 3.30 16 14 N -0.68 -12.01 5.34 -14.27 -0.08 -12.09 16 15 C 0.70 12.30 8.29 -86.92 -0.72 11.58 16 16 O -0.56 -12.69 14.10 5.28 0.07 -12.62 16 17 N -0.75 -8.93 5.55 -66.41 -0.37 -9.30 16 18 C 0.18 1.84 5.79 -5.19 -0.03 1.81 16 19 C -0.07 -0.60 5.25 -104.53 -0.55 -1.15 16 20 C -0.11 -0.74 9.68 -39.64 -0.38 -1.12 16 21 C -0.09 -0.52 9.54 -39.18 -0.37 -0.90 16 22 C -0.14 -1.08 5.87 -104.97 -0.62 -1.70 16 23 C 0.56 4.84 8.05 -12.33 -0.10 4.74 16 24 N -0.85 -3.74 8.82 30.53 0.27 -3.47 16 25 O -0.54 -6.82 17.18 5.33 0.09 -6.73 16 26 C -0.06 -0.50 9.60 -39.18 -0.38 -0.88 16 27 C -0.11 -0.84 9.68 -39.64 -0.38 -1.22 16 28 C -0.21 -5.46 8.39 -38.69 -0.32 -5.78 16 29 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 30 H 0.12 3.20 6.17 -52.49 -0.32 2.88 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.39 5.33 8.84 -40.82 -0.36 4.97 16 34 H 0.39 3.59 8.48 -40.82 -0.35 3.25 16 35 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.13 0.36 6.41 -52.49 -0.34 0.02 16 39 H 0.40 0.66 6.86 -40.82 -0.28 0.38 16 40 H 0.41 1.32 8.93 -40.82 -0.36 0.96 16 41 H 0.14 1.15 7.65 -52.48 -0.40 0.75 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.11 2.87 6.48 -52.49 -0.34 2.52 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -35.24 372.10 -10.19 -45.43 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.83 Total: 12.59 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -6.53 Total: -13.36 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.43 Total: -45.06 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.17 Total: -19.34 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.24 -10.19 -45.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365501097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.141 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds