Wall clock time and date at job start Tue Mar 31 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 119.99796 * 2 1 4 4 H 1.48497 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47190 * 300.00362 * 3 2 1 6 6 H 1.48497 * 109.47123 * 59.99848 * 3 2 1 7 7 C 1.39926 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99810 * 196.79122 * 7 2 1 9 9 C 1.41410 * 120.00431 * 16.79444 * 7 2 1 10 10 C 1.40776 * 120.20586 * 25.15757 * 9 7 2 11 11 C 1.37641 * 119.88194 * 180.02562 * 10 9 7 12 12 C 1.38535 * 120.32340 * 0.02562 * 11 10 9 13 13 C 1.39241 * 120.42601 * 359.96312 * 12 11 10 14 14 N 1.39959 * 119.94484 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99834 * 145.77316 * 14 13 12 16 16 O 1.21595 * 120.00135 * 354.84750 * 15 14 13 17 17 N 1.34775 * 120.00186 * 174.84821 * 15 14 13 18 18 C 1.46506 * 120.00449 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47013 * 179.97438 * 18 17 15 20 20 C 1.38355 * 119.85332 * 269.73036 * 19 18 17 21 21 C 1.37959 * 120.14389 * 179.72900 * 20 19 18 22 22 C 1.39580 * 119.85082 * 0.54352 * 21 20 19 23 23 C 1.47842 * 120.14612 * 179.70296 * 22 21 20 24 24 N 1.34781 * 119.99816 * 0.02975 * 23 22 21 25 25 O 1.21546 * 120.00165 * 180.02562 * 23 22 21 26 26 C 1.39575 * 119.70938 * 359.72795 * 22 21 20 27 27 C 1.37960 * 119.85527 * 0.02562 * 26 22 21 28 28 C 1.38273 * 120.10980 * 0.26916 * 13 12 11 29 29 H 0.97001 * 120.00817 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.06370 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.84008 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.78806 * 179.97438 * 12 11 10 33 33 H 0.96992 * 119.99854 * 325.77372 * 14 13 12 34 34 H 0.97004 * 119.99920 * 0.02562 * 17 15 14 35 35 H 1.09007 * 109.46575 * 59.99924 * 18 17 15 36 36 H 1.08998 * 109.46754 * 300.00364 * 18 17 15 37 37 H 1.08005 * 119.92696 * 359.97438 * 20 19 18 38 38 H 1.07998 * 120.07808 * 180.24941 * 21 20 19 39 39 H 0.96995 * 119.99936 * 359.97438 * 24 23 22 40 40 H 0.97002 * 120.00225 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.07163 * 179.97438 * 26 22 21 42 42 H 1.07999 * 119.92902 * 179.97438 * 27 26 22 43 43 H 1.07996 * 120.16649 * 179.74466 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2318 0.2697 9 6 1.3462 -2.4102 -0.3549 10 6 0.2108 -2.3732 -1.1864 11 6 -0.4284 -3.5437 -1.5267 12 6 0.0397 -4.7591 -1.0545 13 6 1.1616 -4.8110 -0.2315 14 7 1.6255 -6.0443 0.2403 15 6 2.9471 -6.2471 0.4097 16 8 3.7422 -5.3941 0.0651 17 7 3.3875 -7.3954 0.9610 18 6 4.8242 -7.6161 1.1446 19 6 5.0483 -8.9658 1.7765 20 6 5.0938 -9.0822 3.1544 21 6 5.2930 -10.3156 3.7393 22 6 5.4602 -11.4459 2.9375 23 6 5.6807 -12.7699 3.5572 24 7 5.7200 -12.8875 4.8993 25 8 5.8264 -13.7523 2.8565 26 6 5.4188 -11.3205 1.5480 27 6 5.2138 -10.0820 0.9759 28 6 1.8146 -3.6456 0.1254 29 1 -0.4851 0.8400 0.0004 30 1 -0.1580 -1.4281 -1.5566 31 1 -1.2991 -3.5145 -2.1649 32 1 -0.4688 -5.6722 -1.3266 33 1 0.9959 -6.7531 0.4452 34 1 2.7533 -8.0761 1.2355 35 1 5.2310 -6.8398 1.7927 36 1 5.3239 -7.5801 0.1766 37 1 4.9691 -8.2060 3.7735 38 1 5.3243 -10.4059 4.8150 39 1 5.6040 -12.1035 5.4585 40 1 5.8650 -13.7562 5.3060 41 1 5.5479 -12.1911 0.9220 42 1 5.1820 -9.9836 -0.0991 43 1 2.6825 -3.6845 0.7670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365501097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:45 Heat of formation + Delta-G solvation = -46.214986 kcal Electronic energy + Delta-G solvation = -26794.549667 eV Core-core repulsion = 22802.944769 eV Total energy + Delta-G solvation = -3991.604898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52465 -41.09593 -39.59590 -38.99631 -36.33977 -35.87950 -34.91493 -34.75641 -32.43724 -31.93475 -31.71748 -29.84613 -27.54267 -27.16300 -24.08354 -23.69120 -23.13422 -22.67272 -21.66728 -21.40734 -19.59338 -19.44346 -19.13235 -17.90690 -17.62264 -17.12000 -16.62371 -16.40775 -16.33702 -16.10144 -15.98751 -15.83723 -15.75371 -15.25834 -14.87827 -14.66536 -14.57297 -14.26527 -14.05600 -13.71016 -13.50595 -13.46061 -12.97732 -12.87796 -12.76950 -12.62879 -12.15957 -12.07812 -11.98275 -11.53752 -11.26462 -11.23787 -10.98159 -10.78315 -10.76048 -10.15501 -10.00656 -9.96478 -9.36062 -8.70072 -8.55872 -6.33963 -0.34688 0.35491 0.95081 1.06056 1.37719 1.49259 1.52949 1.57399 1.94231 2.20512 2.23181 2.49963 2.76913 2.81278 3.38605 3.52277 3.75227 3.77794 3.88615 3.98265 4.25266 4.33983 4.50228 4.61263 4.63697 4.67278 4.78400 5.01611 5.07937 5.13273 5.15694 5.18481 5.22893 5.29044 5.35141 5.39655 5.50202 5.74745 5.78593 5.85884 5.86002 6.08744 6.14498 6.21271 6.37879 6.39564 6.72027 6.97356 7.04023 7.11235 7.24467 7.61346 8.35820 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.001821 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.969936 B =15375.131919 C =16055.322843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.088 3.912 10 C -0.199 4.199 11 C -0.091 4.091 12 C -0.252 4.252 13 C 0.177 3.823 14 N -0.670 5.670 15 C 0.696 3.304 16 O -0.617 6.617 17 N -0.722 5.722 18 C 0.178 3.822 19 C -0.076 4.076 20 C -0.106 4.106 21 C -0.075 4.075 22 C -0.145 4.145 23 C 0.560 3.440 24 N -0.829 5.829 25 O -0.590 6.590 26 C -0.073 4.073 27 C -0.107 4.107 28 C -0.235 4.235 29 H 0.289 0.711 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.418 0.582 34 H 0.412 0.588 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.148 0.852 38 H 0.164 0.836 39 H 0.418 0.582 40 H 0.413 0.587 41 H 0.130 0.870 42 H 0.140 0.860 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.918 -21.019 10.634 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.080 0.920 9 C 0.085 3.915 10 C -0.219 4.219 11 C -0.110 4.110 12 C -0.273 4.273 13 C 0.083 3.917 14 N -0.318 5.318 15 C 0.397 3.603 16 O -0.496 6.496 17 N -0.379 5.379 18 C 0.054 3.946 19 C -0.077 4.077 20 C -0.124 4.124 21 C -0.093 4.093 22 C -0.148 4.148 23 C 0.347 3.653 24 N -0.393 5.393 25 O -0.471 6.471 26 C -0.092 4.092 27 C -0.125 4.125 28 C -0.257 4.257 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.255 0.745 34 H 0.249 0.751 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.166 0.834 38 H 0.182 0.818 39 H 0.250 0.750 40 H 0.245 0.755 41 H 0.148 0.852 42 H 0.158 0.842 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.547 -20.655 9.830 24.087 hybrid contribution -0.155 0.218 0.518 0.583 sum 7.391 -20.437 10.348 24.070 Atomic orbital electron populations 1.69861 1.08692 1.30433 1.35896 1.26684 0.95592 1.04191 0.91258 0.85193 0.79120 0.76315 0.79251 1.18942 1.18426 1.18622 1.19745 0.97462 0.92677 1.43191 0.91958 1.17848 0.91952 0.92439 0.89258 1.21290 1.00095 0.97557 1.02915 1.20820 0.98897 0.92172 0.99085 1.20439 1.01784 0.98020 1.07061 1.17271 0.95325 0.83443 0.95686 1.42321 1.05935 1.14834 1.68704 1.16146 0.82473 0.82869 0.78842 1.90972 1.55403 1.46037 1.57198 1.44886 1.08566 1.18098 1.66345 1.20074 0.80083 0.93627 1.00801 1.19992 0.99507 0.93748 0.94437 1.21312 0.98609 0.98662 0.93832 1.21566 0.96023 0.90651 1.01080 1.20020 1.06709 0.93300 0.94769 1.18495 0.75232 0.88259 0.83359 1.43607 1.74265 1.15557 1.05867 1.90806 1.52173 1.40708 1.63454 1.21325 0.95808 0.97984 0.94064 1.21194 0.99077 0.91256 1.00986 1.20940 1.04581 0.92122 1.08044 0.90058 0.87868 0.85954 0.85101 0.74477 0.75124 0.90965 0.91191 0.83401 0.81845 0.74971 0.75461 0.85185 0.84248 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.02 10.94 21.82 0.24 -43.78 16 2 C 0.04 1.98 5.16 85.25 0.44 2.42 16 3 Si 0.98 40.16 29.59 68.60 2.03 42.19 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.50 -29.20 9.05 23.46 0.21 -28.99 16 8 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 9 C 0.09 5.08 5.57 -21.31 -0.12 4.96 16 10 C -0.20 -10.73 8.69 22.75 0.20 -10.54 16 11 C -0.09 -4.16 10.02 22.20 0.22 -3.93 16 12 C -0.25 -10.51 9.97 22.58 0.23 -10.29 16 13 C 0.18 7.92 6.25 38.09 0.24 8.15 16 14 N -0.67 -22.57 5.34 -317.33 -1.70 -24.27 16 15 C 0.70 24.11 8.29 179.06 1.48 25.59 16 16 O -0.62 -28.45 14.10 -4.01 -0.06 -28.50 16 17 N -0.72 -16.14 5.55 -482.27 -2.68 -18.82 16 18 C 0.18 3.56 5.79 85.63 0.50 4.06 16 19 C -0.08 -1.10 5.25 -19.81 -0.10 -1.20 16 20 C -0.11 -1.17 9.68 22.23 0.22 -0.95 16 21 C -0.07 -0.65 9.54 22.53 0.21 -0.44 16 22 C -0.14 -2.01 5.87 -20.09 -0.12 -2.13 16 23 C 0.56 8.83 8.05 86.78 0.70 9.53 16 24 N -0.83 -5.20 8.82 -175.61 -1.55 -6.75 16 25 O -0.59 -14.84 17.18 -3.86 -0.07 -14.91 16 26 C -0.07 -1.16 9.60 22.53 0.22 -0.94 16 27 C -0.11 -1.55 9.68 22.23 0.22 -1.34 16 28 C -0.23 -12.70 8.39 22.85 0.19 -12.51 16 29 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 30 H 0.10 5.79 6.17 -2.91 -0.02 5.77 16 31 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 32 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 33 H 0.42 9.99 8.84 -92.71 -0.82 9.17 16 34 H 0.41 6.41 8.48 -92.71 -0.79 5.63 16 35 H 0.07 1.58 8.08 -2.38 -0.02 1.56 16 36 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 37 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.16 0.16 6.41 -2.91 -0.02 0.14 16 39 H 0.42 -0.13 6.86 -92.71 -0.64 -0.76 16 40 H 0.41 1.78 8.93 -92.71 -0.83 0.95 16 41 H 0.13 2.23 7.65 -2.91 -0.02 2.21 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.08 4.86 6.48 -2.91 -0.02 4.84 16 Total: -1.00 -81.76 372.10 -0.80 -82.57 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -1.95 Total: 30.82 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.93 Total: -18.55 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -5.68 Total: -93.62 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.12 Total: -43.41 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -81.76 -0.80 -82.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365501097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.353 kcal (2) G-P(sol) polarization free energy of solvation -81.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds