Wall clock time and date at job start Tue Mar 31 2020 22:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99542 * 2 1 4 4 H 1.48498 * 109.47333 * 90.00148 * 3 2 1 5 5 H 1.48506 * 109.47267 * 210.00118 * 3 2 1 6 6 H 1.48503 * 109.47117 * 329.99755 * 3 2 1 7 7 C 1.37875 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99717 * 185.46300 * 7 2 1 9 9 C 1.50701 * 120.00169 * 5.46864 * 7 2 1 10 10 C 1.52998 * 115.54584 * 279.44440 * 9 7 2 11 11 S 1.81397 * 109.46914 * 294.73796 * 10 9 7 12 12 O 1.42102 * 110.54474 * 297.68221 * 11 10 9 13 13 O 1.42094 * 110.54481 * 74.43820 * 11 10 9 14 14 N 1.65601 * 104.45037 * 186.06289 * 11 10 9 15 15 C 1.46928 * 120.62901 * 269.72088 * 14 11 10 16 16 C 1.52762 * 109.00760 * 233.58219 * 15 14 11 17 17 C 1.53034 * 109.38485 * 305.58660 * 16 15 14 18 18 N 1.46498 * 109.46217 * 181.26005 * 17 16 15 19 19 C 1.34946 * 126.03633 * 324.93522 * 18 17 16 20 20 C 1.35314 * 107.74429 * 179.97438 * 19 18 17 21 21 C 1.39876 * 107.92249 * 359.97438 * 20 19 18 22 22 N 1.30837 * 108.20055 * 359.74463 * 21 20 19 23 23 C 1.53039 * 109.53855 * 61.23932 * 17 16 15 24 24 C 1.46927 * 120.63418 * 89.99640 * 14 11 10 25 25 C 1.53000 * 117.49784 * 133.73313 * 9 7 2 26 26 C 1.53002 * 117.49792 * 65.11055 * 9 7 2 27 27 H 0.96992 * 120.00525 * 354.98912 * 1 2 3 28 28 H 1.08999 * 109.47654 * 54.73767 * 10 9 7 29 29 H 1.09000 * 109.46713 * 174.74179 * 10 9 7 30 30 H 1.09005 * 109.58492 * 353.41402 * 15 14 11 31 31 H 1.09002 * 109.58823 * 113.84194 * 15 14 11 32 32 H 1.09004 * 109.56004 * 185.55004 * 16 15 14 33 33 H 1.08998 * 109.35891 * 65.50047 * 16 15 14 34 34 H 1.08998 * 109.44799 * 301.22999 * 17 16 15 35 35 H 1.07999 * 126.12938 * 359.97438 * 19 18 17 36 36 H 1.08000 * 126.04069 * 179.97438 * 20 19 18 37 37 H 1.07999 * 125.89771 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.50221 * 178.68664 * 23 17 16 39 39 H 1.09004 * 109.52322 * 58.60437 * 23 17 16 40 40 H 1.08997 * 109.58628 * 246.15603 * 24 14 11 41 41 H 1.09003 * 109.58285 * 6.44511 * 24 14 11 42 42 H 1.08990 * 117.50199 * 359.97438 * 25 9 7 43 43 H 1.09005 * 117.49483 * 145.02183 * 25 9 7 44 44 H 1.09003 * 117.49431 * 214.97745 * 26 9 7 45 45 H 1.09002 * 117.49909 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5466 1.4404 -0.7001 6 1 1.4464 2.6527 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0809 -1.1961 0.0885 9 6 1.2563 -2.4961 -0.1255 10 6 0.6206 -3.0182 1.1645 11 16 1.9241 -3.4359 2.3549 12 8 2.7491 -4.4753 1.8467 13 8 2.4900 -2.2562 2.9091 14 7 1.1186 -4.1362 3.6210 15 6 0.6273 -3.3196 4.7393 16 6 1.1547 -3.9014 6.0496 17 6 0.7752 -5.3813 6.1374 18 7 1.2540 -5.9335 7.4070 19 6 2.3945 -5.5911 8.0418 20 6 2.4713 -6.3247 9.1762 21 6 1.3386 -7.1432 9.2370 22 7 0.6053 -6.9053 8.1799 23 6 1.4161 -6.1439 4.9756 24 6 0.8868 -5.5868 3.6504 25 6 1.7972 -3.5295 -1.1157 26 6 0.5136 -2.7611 -1.4367 27 1 -0.4850 0.8367 0.0734 28 1 -0.0255 -2.2495 1.5883 29 1 0.0307 -3.9080 0.9446 30 1 0.9822 -2.2950 4.6270 31 1 -0.4626 -3.3320 4.7497 32 1 0.7171 -3.3630 6.8903 33 1 2.2398 -3.8018 6.0783 34 1 -0.3089 -5.4818 6.0835 35 1 3.1166 -4.8621 7.7049 36 1 3.2666 -6.2853 9.9058 37 1 1.1074 -7.8469 10.0229 38 1 1.1646 -7.2017 5.0519 39 1 2.4988 -6.0237 5.0143 40 1 -0.1815 -5.7878 3.5702 41 1 1.4107 -6.0575 2.8184 42 1 2.6939 -3.2674 -1.6771 43 1 1.7003 -4.5817 -0.8481 44 1 -0.4277 -3.3079 -1.3802 45 1 0.5659 -1.9934 -2.2087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365645234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:38 Heat of formation + Delta-G solvation = 34.519013 kcal Electronic energy + Delta-G solvation = -28183.244467 eV Core-core repulsion = 24330.584409 eV Total energy + Delta-G solvation = -3852.660058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37453 -38.55947 -36.81453 -36.41710 -35.17744 -33.89857 -32.10583 -31.37939 -30.27327 -29.74940 -28.19010 -25.52717 -24.64911 -23.65606 -21.80756 -21.26847 -21.06248 -20.05182 -19.55773 -18.40476 -17.69271 -16.90108 -16.50594 -15.81736 -15.25906 -15.20094 -14.90501 -14.76385 -14.41739 -14.38159 -13.99652 -13.84617 -13.55787 -13.49932 -13.16418 -12.83910 -12.56274 -12.28350 -12.00222 -11.88117 -11.59624 -11.40546 -11.35184 -11.31304 -11.09411 -10.97637 -10.96096 -10.87092 -10.67923 -10.62471 -10.50566 -10.17936 -9.75832 -9.53619 -9.06232 -8.98136 -8.72389 -8.63767 -8.13478 -6.18990 -4.30279 0.92866 1.77966 2.31769 2.72137 3.19104 3.27434 3.33036 3.37760 4.18349 4.33003 4.42525 4.51429 4.65658 4.68303 4.75466 4.80052 4.91771 4.95428 5.07087 5.11861 5.17330 5.30321 5.38373 5.45564 5.51263 5.58601 5.63690 5.65448 5.70153 5.79348 5.87832 5.91584 5.98607 6.08749 6.21124 6.32517 6.51922 6.56666 6.65684 6.69346 6.89337 6.93563 7.18757 7.32777 7.58879 7.75292 8.14761 8.75447 9.41634 10.88726 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.003095 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.007939 B = 9043.606030 C = 9677.787799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.082 3.918 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.044 3.956 10 C -0.551 4.551 11 S 2.604 3.396 12 O -0.970 6.970 13 O -0.946 6.946 14 N -1.014 6.014 15 C 0.123 3.877 16 C -0.141 4.141 17 C 0.163 3.837 18 N -0.363 5.363 19 C 0.058 3.942 20 C -0.280 4.280 21 C 0.040 3.960 22 N -0.300 5.300 23 C -0.140 4.140 24 C 0.122 3.878 25 C -0.207 4.207 26 C -0.144 4.144 27 H 0.263 0.737 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.180 0.820 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -10.870 13.482 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.042 3.958 10 C -0.684 4.684 11 S 2.703 3.297 12 O -0.960 6.960 13 O -0.936 6.936 14 N -0.850 5.850 15 C -0.003 4.003 16 C -0.181 4.181 17 C 0.062 3.938 18 N -0.145 5.145 19 C -0.089 4.089 20 C -0.310 4.310 21 C -0.146 4.146 22 N -0.121 5.121 23 C -0.180 4.180 24 C -0.004 4.004 25 C -0.245 4.245 26 C -0.184 4.184 27 H 0.073 0.927 28 H 0.154 0.846 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.189 0.811 36 H 0.163 0.837 37 H 0.197 0.803 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.298 -10.859 12.660 16.730 hybrid contribution 0.388 1.085 0.415 1.225 sum -0.910 -9.774 13.075 16.350 Atomic orbital electron populations 1.69963 1.06025 1.27260 1.47823 1.24953 0.94826 0.99247 0.93270 0.86576 0.80115 0.82772 0.78708 1.19962 1.19431 1.21055 1.20533 0.93261 0.88484 1.53068 0.91393 1.18282 0.98635 0.94168 0.84764 1.29991 1.16004 1.08506 1.13921 1.05340 0.76515 0.73577 0.74256 1.93485 1.64742 1.57389 1.80403 1.93525 1.75149 1.48707 1.76236 1.58271 1.76257 1.14352 1.36089 1.21252 0.99117 0.95866 0.84069 1.22217 1.03229 0.93340 0.99327 1.21313 1.00505 0.93055 0.78957 1.48976 1.16402 1.30977 1.18164 1.22565 0.91203 1.00789 0.94345 1.21497 1.03150 1.04724 1.01610 1.23853 0.93722 1.00077 0.96943 1.77346 1.21230 1.07841 1.05702 1.22300 1.01784 1.00148 0.93747 1.21340 1.01160 0.80004 0.97915 1.23165 0.98525 0.95886 1.06884 1.22585 0.92940 1.01391 1.01438 0.92689 0.84635 0.88398 0.87458 0.91045 0.89721 0.90242 0.87735 0.81137 0.83743 0.80287 0.89993 0.90580 0.91175 0.88011 0.89526 0.90651 0.91503 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.49 13.10 55.43 0.73 -22.77 16 2 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -13.80 8.17 -34.44 -0.28 -14.08 16 8 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 9 C 0.04 1.04 1.26 -155.66 -0.20 0.84 16 10 C -0.55 -11.08 6.03 37.16 0.22 -10.86 16 11 S 2.60 49.82 5.19 -107.50 -0.56 49.26 16 12 O -0.97 -20.11 16.59 -57.54 -0.95 -21.07 16 13 O -0.95 -21.23 16.24 -57.54 -0.93 -22.17 16 14 N -1.01 -14.13 3.23 -113.76 -0.37 -14.50 16 15 C 0.12 1.47 6.40 -3.93 -0.03 1.44 16 16 C -0.14 -1.44 4.95 -26.84 -0.13 -1.57 16 17 C 0.16 1.70 3.16 -67.89 -0.21 1.49 16 18 N -0.36 -4.16 3.53 -54.83 -0.19 -4.35 16 19 C 0.06 0.59 10.60 -17.22 -0.18 0.41 16 20 C -0.28 -2.71 10.80 -40.01 -0.43 -3.15 16 21 C 0.04 0.41 12.03 -17.36 -0.21 0.20 16 22 N -0.30 -3.76 12.58 30.63 0.39 -3.37 16 23 C -0.14 -1.50 5.68 -26.61 -0.15 -1.65 16 24 C 0.12 1.40 6.43 -3.71 -0.02 1.38 16 25 C -0.21 -4.42 9.96 -26.73 -0.27 -4.69 16 26 C -0.14 -3.20 9.67 -26.73 -0.26 -3.46 16 27 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 28 H 0.14 2.86 8.14 -51.92 -0.42 2.43 16 29 H 0.10 1.65 8.09 -51.92 -0.42 1.23 16 30 H 0.11 1.43 6.85 -51.93 -0.36 1.07 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.84 7.23 -51.93 -0.38 0.46 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.17 1.39 7.30 -52.49 -0.38 1.01 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 1.23 6.86 -51.93 -0.36 0.88 16 42 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -32.95 380.04 -10.37 -43.32 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.93 Total: 5.58 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: -2.25 Total: -31.60 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.55 Total: -44.99 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.89 Total: -43.23 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 49.82 SS G_CDS: -0.56 Total: 49.26 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.95 -10.37 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365645234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.838 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds