Wall clock time and date at job start Tue Mar 31 2020 22:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99846 * 2 1 4 4 H 1.48503 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47194 * 300.00023 * 3 2 1 6 6 H 1.48505 * 109.47476 * 60.00270 * 3 2 1 7 7 C 1.37869 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00523 * 173.00637 * 7 2 1 9 9 C 1.50707 * 119.99943 * 352.99952 * 7 2 1 10 10 C 1.53003 * 115.54709 * 84.78797 * 9 7 2 11 11 S 1.81409 * 109.46903 * 39.91578 * 10 9 7 12 12 O 1.42101 * 110.54364 * 62.31033 * 11 10 9 13 13 O 1.42097 * 110.54155 * 285.55640 * 11 10 9 14 14 N 1.65603 * 104.44704 * 173.93513 * 11 10 9 15 15 C 1.46928 * 120.63092 * 89.99681 * 14 11 10 16 16 C 1.53194 * 108.77753 * 233.63087 * 15 14 11 17 17 C 1.53043 * 109.30968 * 305.36611 * 16 15 14 18 18 C 1.50703 * 109.45709 * 181.38615 * 17 16 15 19 19 N 1.30504 * 125.64863 * 95.02485 * 18 17 16 20 20 C 1.34127 * 109.25393 * 179.97438 * 19 18 17 21 21 C 1.34669 * 108.01925 * 0.02562 * 20 19 18 22 22 N 1.35040 * 125.64624 * 274.71540 * 18 17 16 23 23 H 0.96998 * 126.40417 * 0.02562 * 22 18 17 24 24 C 1.53037 * 109.53990 * 61.36545 * 17 16 15 25 25 C 1.46921 * 120.63171 * 270.02190 * 14 11 10 26 26 C 1.52998 * 117.51820 * 230.48859 * 9 7 2 27 27 C 1.52994 * 59.99990 * 107.48339 * 26 9 7 28 28 H 0.97004 * 120.00260 * 5.01824 * 1 2 3 29 29 H 1.08992 * 109.47559 * 279.91751 * 10 9 7 30 30 H 1.09006 * 109.46995 * 159.91165 * 10 9 7 31 31 H 1.09001 * 109.58339 * 113.84374 * 15 14 11 32 32 H 1.09005 * 109.70456 * 353.49070 * 15 14 11 33 33 H 1.08996 * 109.49726 * 65.31594 * 16 15 14 34 34 H 1.08996 * 109.49716 * 185.41433 * 16 15 14 35 35 H 1.09001 * 109.46169 * 301.34265 * 17 16 15 36 36 H 1.07997 * 125.98964 * 180.02562 * 20 19 18 37 37 H 1.08001 * 126.58902 * 179.97438 * 21 20 19 38 38 H 1.09000 * 109.50076 * 178.68288 * 24 17 16 39 39 H 1.09005 * 109.52422 * 58.59788 * 24 17 16 40 40 H 1.09003 * 109.58433 * 246.15805 * 25 14 11 41 41 H 1.09001 * 109.58862 * 6.57880 * 25 14 11 42 42 H 1.09004 * 117.49738 * 214.97281 * 26 9 7 43 43 H 1.08998 * 117.50130 * 359.97438 * 26 9 7 44 44 H 1.08993 * 117.50277 * 252.51017 * 27 26 9 45 45 H 1.09009 * 117.50016 * 107.48533 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0785 -1.1975 -0.1144 9 6 1.2594 -2.4943 0.1580 10 6 0.6799 -3.0839 -1.1295 11 16 1.8647 -2.8585 -2.4846 12 8 3.0719 -3.5570 -2.2129 13 8 1.8826 -1.5031 -2.9110 14 7 1.1962 -3.6785 -3.7586 15 6 0.2862 -2.9996 -4.6912 16 6 -1.0163 -3.8010 -4.7805 17 6 -0.6949 -5.2489 -5.1579 18 6 -1.9765 -6.0322 -5.2799 19 7 -2.6325 -6.2497 -6.3870 20 6 -3.7233 -6.9825 -6.1181 21 6 -3.7442 -7.2279 -4.7941 22 7 -2.6332 -6.6303 -4.2628 23 1 -2.3686 -6.6336 -3.3296 24 6 0.1853 -5.8768 -4.0748 25 6 1.5014 -5.0989 -3.9775 26 6 1.7652 -3.4742 1.2186 27 6 0.4655 -2.7008 1.4494 28 1 -0.4851 0.8368 -0.0735 29 1 -0.2528 -2.5758 -1.3742 30 1 0.4880 -4.1475 -0.9879 31 1 0.7486 -2.9429 -5.6767 32 1 0.0724 -1.9938 -4.3295 33 1 -1.5230 -3.7804 -3.8157 34 1 -1.6623 -3.3617 -5.5406 35 1 -0.1663 -5.2670 -6.1110 36 1 -4.4562 -7.3170 -6.8373 37 1 -4.4916 -7.7918 -4.2557 38 1 0.3945 -6.9150 -4.3326 39 1 -0.3325 -5.8371 -3.1163 40 1 2.0629 -5.2133 -4.9048 41 1 2.0897 -5.4792 -3.1424 42 1 1.6852 -4.5389 0.9991 43 1 2.6374 -3.1787 1.8017 44 1 0.4823 -1.8963 2.1846 45 1 -0.4698 -3.2567 1.3818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365679264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:37 Heat of formation + Delta-G solvation = 5.605295 kcal Electronic energy + Delta-G solvation = -28580.996907 eV Core-core repulsion = 24727.083056 eV Total energy + Delta-G solvation = -3853.913851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25477 -38.48239 -36.77327 -36.22134 -34.96241 -33.24900 -32.60412 -32.08174 -31.13594 -28.93472 -28.22207 -25.53853 -24.69843 -23.44918 -21.91324 -21.25526 -20.85739 -20.35080 -19.40617 -18.49854 -17.99957 -17.01888 -16.42855 -15.67381 -15.23056 -15.14341 -14.67880 -14.67386 -14.42232 -14.23586 -14.17011 -13.81023 -13.76694 -13.60647 -13.19047 -13.10954 -12.44716 -12.24144 -11.89400 -11.74788 -11.40263 -11.25972 -11.15495 -11.09138 -11.02054 -10.91640 -10.72772 -10.54409 -10.51519 -10.38722 -10.19873 -10.17422 -10.14149 -9.73696 -9.02695 -8.79567 -8.57698 -8.55901 -8.13890 -6.19429 -4.34004 1.10806 1.88443 2.95853 2.98168 3.29109 3.38372 3.41010 3.43458 4.08613 4.37536 4.48456 4.66489 4.72838 4.88656 4.90804 4.99668 5.06301 5.09288 5.10984 5.21473 5.27702 5.28445 5.43045 5.54062 5.58028 5.67733 5.72917 5.78994 5.87235 5.89294 5.94879 5.97540 6.17382 6.22461 6.28092 6.35247 6.56628 6.57167 6.64499 6.84665 6.92456 7.14043 7.17424 7.34405 7.75768 7.93875 8.14796 8.75189 9.43544 10.88195 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.003505 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.043015 B = 7987.187723 C = 8144.189933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.098 3.902 3 Si 0.892 3.108 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.051 3.949 10 C -0.559 4.559 11 S 2.623 3.377 12 O -0.972 6.972 13 O -0.938 6.938 14 N -1.015 6.015 15 C 0.123 3.877 16 C -0.127 4.127 17 C -0.001 4.001 18 C 0.223 3.777 19 N -0.492 5.492 20 C -0.030 4.030 21 C -0.061 4.061 22 N -0.564 5.564 23 H 0.419 0.581 24 C -0.135 4.135 25 C 0.124 3.876 26 C -0.204 4.204 27 C -0.145 4.145 28 H 0.265 0.735 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 -13.726 -8.153 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.110 4.110 3 Si 0.719 3.281 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.049 3.951 10 C -0.691 4.691 11 S 2.720 3.280 12 O -0.963 6.963 13 O -0.928 6.928 14 N -0.851 5.851 15 C -0.003 4.003 16 C -0.167 4.167 17 C -0.021 4.021 18 C -0.042 4.042 19 N -0.211 5.211 20 C -0.178 4.178 21 C -0.195 4.195 22 N -0.167 5.167 23 H 0.257 0.743 24 C -0.175 4.175 25 C -0.002 4.002 26 C -0.242 4.242 27 C -0.183 4.183 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.185 0.815 37 H 0.192 0.808 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.654 -12.877 -8.997 16.695 hybrid contribution -0.822 0.116 1.536 1.746 sum -6.475 -12.761 -7.461 16.138 Atomic orbital electron populations 1.69957 1.06201 1.27410 1.46551 1.24890 0.94723 0.99314 0.92034 0.86517 0.80789 0.83123 0.77691 1.19181 1.20229 1.20838 1.20635 0.93708 0.88763 1.54935 0.91242 1.18187 0.98670 0.94011 0.84256 1.30028 1.16642 1.05932 1.16543 1.04792 0.75627 0.73533 0.74033 1.93468 1.42444 1.75070 1.85303 1.93528 1.86242 1.33349 1.79690 1.58375 1.62759 1.19858 1.44111 1.21341 0.88444 0.96237 0.94253 1.22012 0.98357 0.93680 1.02631 1.19628 0.88254 0.93059 1.01149 1.23293 0.97883 0.99963 0.83024 1.70257 1.07013 1.17583 1.26280 1.22338 0.98506 1.02831 0.94138 1.22754 0.93905 1.06647 0.96177 1.43300 1.20410 1.41592 1.11424 0.74273 1.22069 0.97078 0.99837 0.98531 1.21268 0.95346 0.80167 1.03378 1.23120 0.98713 0.95498 1.06822 1.22522 0.92317 1.01112 1.02389 0.92580 0.85603 0.88950 0.91070 0.88303 0.91333 0.90032 0.87692 0.81479 0.80795 0.90368 0.91613 0.90961 0.88820 0.91356 0.89670 0.89640 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.60 12.96 55.43 0.72 -22.89 16 2 C 0.10 2.65 5.39 -17.82 -0.10 2.56 16 3 Si 0.89 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.54 -14.70 6.89 -34.44 -0.24 -14.93 16 8 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 9 C 0.05 1.21 1.64 -155.66 -0.26 0.95 16 10 C -0.56 -11.26 6.29 37.16 0.23 -11.03 16 11 S 2.62 53.51 4.59 -107.50 -0.49 53.02 16 12 O -0.97 -21.75 16.73 -57.54 -0.96 -22.71 16 13 O -0.94 -22.63 15.86 -57.54 -0.91 -23.55 16 14 N -1.02 -15.06 3.22 -113.52 -0.37 -15.43 16 15 C 0.12 1.61 6.31 -3.71 -0.02 1.59 16 16 C -0.13 -1.41 5.34 -26.61 -0.14 -1.55 16 17 C 0.00 -0.01 2.62 -91.73 -0.24 -0.25 16 18 C 0.22 2.48 6.87 -155.41 -1.07 1.41 16 19 N -0.49 -6.36 11.25 -10.82 -0.12 -6.48 16 20 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 21 C -0.06 -0.52 12.04 -16.56 -0.20 -0.72 16 22 N -0.56 -5.08 5.91 -10.22 -0.06 -5.14 16 23 H 0.42 2.84 8.20 -40.82 -0.33 2.51 16 24 C -0.14 -1.26 5.08 -26.61 -0.14 -1.40 16 25 C 0.12 1.46 6.31 -3.71 -0.02 1.44 16 26 C -0.20 -4.31 9.88 -26.73 -0.26 -4.58 16 27 C -0.14 -3.21 9.50 -26.74 -0.25 -3.46 16 28 H 0.26 6.86 8.32 -40.82 -0.34 6.53 16 29 H 0.13 2.58 8.14 -51.93 -0.42 2.15 16 30 H 0.09 1.51 7.95 -51.92 -0.41 1.10 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.45 7.11 -51.93 -0.37 1.08 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.57 7.49 -51.93 -0.39 0.18 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.14 7.10 -51.93 -0.37 0.77 16 42 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 43 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 44 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 45 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -34.28 376.99 -11.37 -45.65 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.91 Total: 5.71 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: -2.92 Total: -30.50 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.17 Total: -49.94 kcal Atomic # 8 Polarization: -44.38 SS G_CDS: -1.87 Total: -46.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 53.51 SS G_CDS: -0.49 Total: 53.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.28 -11.37 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365679264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.256 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds