Wall clock time and date at job start Tue Mar 31 2020 22:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99846 * 2 1 4 4 H 1.48503 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47194 * 300.00023 * 3 2 1 6 6 H 1.48505 * 109.47476 * 60.00270 * 3 2 1 7 7 C 1.37869 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00523 * 173.00637 * 7 2 1 9 9 C 1.50707 * 119.99943 * 352.99952 * 7 2 1 10 10 C 1.53003 * 115.54709 * 84.78797 * 9 7 2 11 11 S 1.81409 * 109.46903 * 39.91578 * 10 9 7 12 12 O 1.42101 * 110.54364 * 62.31033 * 11 10 9 13 13 O 1.42097 * 110.54155 * 285.55640 * 11 10 9 14 14 N 1.65603 * 104.44704 * 173.93513 * 11 10 9 15 15 C 1.46928 * 120.63092 * 89.99681 * 14 11 10 16 16 C 1.53194 * 108.77753 * 233.63087 * 15 14 11 17 17 C 1.53043 * 109.30968 * 305.36611 * 16 15 14 18 18 C 1.50703 * 109.45709 * 181.38615 * 17 16 15 19 19 N 1.30504 * 125.64863 * 95.02485 * 18 17 16 20 20 C 1.34127 * 109.25393 * 179.97438 * 19 18 17 21 21 C 1.34669 * 108.01925 * 0.02562 * 20 19 18 22 22 N 1.35040 * 125.64624 * 274.71540 * 18 17 16 23 23 H 0.96998 * 126.40417 * 0.02562 * 22 18 17 24 24 C 1.53037 * 109.53990 * 61.36545 * 17 16 15 25 25 C 1.46921 * 120.63171 * 270.02190 * 14 11 10 26 26 C 1.52998 * 117.51820 * 230.48859 * 9 7 2 27 27 C 1.52994 * 59.99990 * 107.48339 * 26 9 7 28 28 H 0.97004 * 120.00260 * 5.01824 * 1 2 3 29 29 H 1.08992 * 109.47559 * 279.91751 * 10 9 7 30 30 H 1.09006 * 109.46995 * 159.91165 * 10 9 7 31 31 H 1.09001 * 109.58339 * 113.84374 * 15 14 11 32 32 H 1.09005 * 109.70456 * 353.49070 * 15 14 11 33 33 H 1.08996 * 109.49726 * 65.31594 * 16 15 14 34 34 H 1.08996 * 109.49716 * 185.41433 * 16 15 14 35 35 H 1.09001 * 109.46169 * 301.34265 * 17 16 15 36 36 H 1.07997 * 125.98964 * 180.02562 * 20 19 18 37 37 H 1.08001 * 126.58902 * 179.97438 * 21 20 19 38 38 H 1.09000 * 109.50076 * 178.68288 * 24 17 16 39 39 H 1.09005 * 109.52422 * 58.59788 * 24 17 16 40 40 H 1.09003 * 109.58433 * 246.15805 * 25 14 11 41 41 H 1.09001 * 109.58862 * 6.57880 * 25 14 11 42 42 H 1.09004 * 117.49738 * 214.97281 * 26 9 7 43 43 H 1.08998 * 117.50130 * 359.97438 * 26 9 7 44 44 H 1.08993 * 117.50277 * 252.51017 * 27 26 9 45 45 H 1.09009 * 117.50016 * 107.48533 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0785 -1.1975 -0.1144 9 6 1.2594 -2.4943 0.1580 10 6 0.6799 -3.0839 -1.1295 11 16 1.8647 -2.8585 -2.4846 12 8 3.0719 -3.5570 -2.2129 13 8 1.8826 -1.5031 -2.9110 14 7 1.1962 -3.6785 -3.7586 15 6 0.2862 -2.9996 -4.6912 16 6 -1.0163 -3.8010 -4.7805 17 6 -0.6949 -5.2489 -5.1579 18 6 -1.9765 -6.0322 -5.2799 19 7 -2.6325 -6.2497 -6.3870 20 6 -3.7233 -6.9825 -6.1181 21 6 -3.7442 -7.2279 -4.7941 22 7 -2.6332 -6.6303 -4.2628 23 1 -2.3686 -6.6336 -3.3296 24 6 0.1853 -5.8768 -4.0748 25 6 1.5014 -5.0989 -3.9775 26 6 1.7652 -3.4742 1.2186 27 6 0.4655 -2.7008 1.4494 28 1 -0.4851 0.8368 -0.0735 29 1 -0.2528 -2.5758 -1.3742 30 1 0.4880 -4.1475 -0.9879 31 1 0.7486 -2.9429 -5.6767 32 1 0.0724 -1.9938 -4.3295 33 1 -1.5230 -3.7804 -3.8157 34 1 -1.6623 -3.3617 -5.5406 35 1 -0.1663 -5.2670 -6.1110 36 1 -4.4562 -7.3170 -6.8373 37 1 -4.4916 -7.7918 -4.2557 38 1 0.3945 -6.9150 -4.3326 39 1 -0.3325 -5.8371 -3.1163 40 1 2.0629 -5.2133 -4.9048 41 1 2.0897 -5.4792 -3.1424 42 1 1.6852 -4.5389 0.9991 43 1 2.6374 -3.1787 1.8017 44 1 0.4823 -1.8963 2.1846 45 1 -0.4698 -3.2567 1.3818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365679264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:37 Heat of formation + Delta-G solvation = -17.453528 kcal Electronic energy + Delta-G solvation = -28581.996813 eV Core-core repulsion = 24727.083056 eV Total energy + Delta-G solvation = -3854.913756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.97860 -39.43918 -38.53263 -37.90796 -36.66118 -34.23408 -34.08848 -33.36031 -32.05945 -29.86098 -29.71972 -27.52518 -25.65370 -24.35985 -22.96118 -22.72233 -21.76419 -21.40762 -20.91330 -19.72987 -19.00251 -18.48129 -18.09914 -17.04044 -16.88972 -16.52758 -15.99434 -15.64743 -15.48835 -15.45538 -15.35408 -14.98272 -14.85181 -14.57193 -14.41171 -14.18438 -13.90985 -13.74281 -13.44842 -13.06914 -12.96551 -12.89527 -12.80513 -12.66495 -12.44703 -12.29755 -12.20816 -12.07223 -11.86613 -11.71100 -11.61201 -11.41118 -10.97413 -10.93945 -10.86772 -10.52606 -10.11214 -9.76613 -9.27536 -8.24283 -6.41091 -0.44467 1.18705 1.33424 1.39097 1.47132 2.04805 2.21318 2.32101 2.38518 3.06071 3.13779 3.31528 3.34554 3.50857 3.62326 3.90037 3.96028 4.11966 4.19723 4.22192 4.33463 4.37561 4.39292 4.57192 4.59318 4.59900 4.69178 4.72211 4.80670 4.83071 4.86131 4.90159 4.98390 5.00339 5.06919 5.19390 5.21616 5.26721 5.33926 5.41109 5.61168 5.68233 5.75686 5.87675 6.20575 6.55100 6.68200 7.20936 7.36817 8.82702 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016863 B = 0.003505 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.043015 B = 7987.187723 C = 8144.189933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.061 3.939 3 Si 0.924 3.076 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.557 4.557 8 H 0.046 0.954 9 C 0.014 3.986 10 C -0.551 4.551 11 S 2.629 3.371 12 O -0.999 6.999 13 O -0.987 6.987 14 N -1.006 6.006 15 C 0.119 3.881 16 C -0.118 4.118 17 C 0.006 3.994 18 C 0.209 3.791 19 N -0.529 5.529 20 C -0.061 4.061 21 C -0.045 4.045 22 N -0.558 5.558 23 H 0.431 0.569 24 C -0.127 4.127 25 C 0.114 3.886 26 C -0.189 4.189 27 C -0.142 4.142 28 H 0.266 0.734 29 H 0.120 0.880 30 H 0.135 0.865 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.181 0.819 37 H 0.210 0.790 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 -16.163 -8.076 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.144 4.144 3 Si 0.750 3.250 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.064 0.936 9 C 0.012 3.988 10 C -0.684 4.684 11 S 2.727 3.273 12 O -0.989 6.989 13 O -0.977 6.977 14 N -0.844 5.844 15 C -0.006 4.006 16 C -0.158 4.158 17 C -0.015 4.015 18 C -0.055 4.055 19 N -0.250 5.250 20 C -0.208 4.208 21 C -0.179 4.179 22 N -0.162 5.162 23 H 0.271 0.729 24 C -0.166 4.166 25 C -0.010 4.010 26 C -0.226 4.226 27 C -0.181 4.181 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.153 0.847 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.198 0.802 37 H 0.226 0.774 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.858 -15.310 -8.896 18.988 hybrid contribution -0.457 0.802 1.465 1.732 sum -7.315 -14.508 -7.431 17.866 Atomic orbital electron populations 1.69979 1.06571 1.27842 1.47397 1.25384 0.95469 1.01308 0.92257 0.86020 0.79770 0.81121 0.78116 1.19643 1.20383 1.19224 1.20770 0.92948 0.90941 1.54762 0.93598 1.18331 1.00215 0.93966 0.86318 1.29874 1.15673 1.08281 1.14568 1.04230 0.75615 0.72685 0.74731 1.93422 1.44226 1.75197 1.86051 1.93461 1.87044 1.36558 1.80664 1.57909 1.62767 1.21156 1.42600 1.21476 0.89370 0.95575 0.94219 1.21916 0.96915 0.94281 1.02715 1.19540 0.88313 0.92132 1.01467 1.23257 0.98217 1.00721 0.83321 1.70190 1.08280 1.18767 1.27719 1.22748 0.98735 1.03658 0.95682 1.23297 0.93690 1.05191 0.95734 1.43320 1.20207 1.40937 1.11743 0.72913 1.22031 0.95402 1.00334 0.98866 1.21595 0.97127 0.78201 1.04101 1.23205 0.97798 0.96920 1.04682 1.22461 0.93858 1.00966 1.00773 0.92449 0.86172 0.84721 0.89525 0.90404 0.91398 0.89838 0.87740 0.80173 0.77369 0.88175 0.90437 0.89485 0.88903 0.87826 0.90357 0.91979 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.49 12.96 21.44 0.28 -48.21 16 2 C 0.06 3.36 5.39 84.65 0.46 3.81 16 3 Si 0.92 44.80 29.55 68.60 2.03 46.82 16 4 H -0.27 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.56 -30.64 6.89 25.60 0.18 -30.46 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 9 C 0.01 0.64 1.64 -52.93 -0.09 0.55 16 10 C -0.55 -21.40 6.29 71.98 0.45 -20.94 16 11 S 2.63 106.84 4.59 -56.49 -0.26 106.58 16 12 O -1.00 -44.44 16.73 -127.65 -2.14 -46.58 16 13 O -0.99 -49.04 15.86 -127.65 -2.02 -51.06 16 14 N -1.01 -28.62 3.22 -513.06 -1.65 -30.27 16 15 C 0.12 3.04 6.31 86.36 0.54 3.58 16 16 C -0.12 -2.45 5.34 30.67 0.16 -2.28 16 17 C 0.01 0.11 2.62 -11.51 -0.03 0.08 16 18 C 0.21 4.16 6.87 138.13 0.95 5.11 16 19 N -0.53 -12.87 11.25 -188.13 -2.12 -14.98 16 20 C -0.06 -1.17 11.87 83.52 0.99 -0.18 16 21 C -0.04 -0.63 12.04 83.09 1.00 0.37 16 22 N -0.56 -8.26 5.91 -186.26 -1.10 -9.36 16 23 H 0.43 4.20 8.20 -92.71 -0.76 3.44 16 24 C -0.13 -1.94 5.08 30.67 0.16 -1.78 16 25 C 0.11 2.41 6.31 86.36 0.55 2.96 16 26 C -0.19 -7.60 9.88 30.59 0.30 -7.30 16 27 C -0.14 -6.09 9.50 30.59 0.29 -5.80 16 28 H 0.27 13.94 8.32 -92.71 -0.77 13.17 16 29 H 0.12 4.81 8.14 -2.39 -0.02 4.79 16 30 H 0.13 3.94 7.95 -2.39 -0.02 3.92 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 2.34 7.11 -2.38 -0.02 2.32 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.02 7.49 -2.38 -0.02 1.00 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 2.02 7.10 -2.39 -0.02 2.00 16 42 H 0.10 3.41 8.08 -2.38 -0.02 3.39 16 43 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 45 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 Total: -1.00 -75.67 376.99 -0.84 -76.51 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.24 Total: 22.83 kcal Atomic # 6 Polarization: -58.19 SS G_CDS: 5.91 Total: -52.28 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.59 Total: -102.82 kcal Atomic # 8 Polarization: -93.48 SS G_CDS: -4.16 Total: -97.64 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 106.84 SS G_CDS: -0.26 Total: 106.58 kcal Total: -75.67 -0.84 -76.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365679264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.057 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds