Wall clock time and date at job start Tue Mar 31 2020 22:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48508 * 109.47095 * 274.96371 * 3 2 1 5 5 H 1.48496 * 109.47227 * 34.95968 * 3 2 1 6 6 H 1.48494 * 109.47415 * 154.96581 * 3 2 1 7 7 C 1.39928 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00153 * 196.78939 * 7 2 1 9 9 C 1.41411 * 119.99885 * 16.78190 * 7 2 1 10 10 C 1.40770 * 120.21129 * 25.17322 * 9 7 2 11 11 C 1.37639 * 119.88645 * 180.02562 * 10 9 7 12 12 C 1.38534 * 120.32231 * 0.02562 * 11 10 9 13 13 C 1.39243 * 120.42603 * 359.96176 * 12 11 10 14 14 N 1.39960 * 119.94656 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99795 * 145.77010 * 14 13 12 16 16 O 1.21588 * 120.00264 * 354.85413 * 15 14 13 17 17 N 1.34775 * 120.00034 * 174.84903 * 15 14 13 18 18 C 1.46500 * 120.00449 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.47337 * 180.02562 * 18 17 15 20 20 C 1.38378 * 119.92827 * 270.01946 * 19 18 17 21 21 C 1.38339 * 120.29393 * 180.02562 * 20 19 18 22 22 C 1.37978 * 120.14381 * 359.70055 * 21 20 19 23 23 C 1.39556 * 119.85453 * 0.53047 * 22 21 20 24 24 C 1.47843 * 120.14416 * 179.76790 * 23 22 21 25 25 N 1.34775 * 119.99977 * 359.72334 * 24 23 22 26 26 O 1.21554 * 119.99686 * 179.72036 * 24 23 22 27 27 C 1.37936 * 119.93024 * 89.99728 * 19 18 17 28 28 C 1.38277 * 120.10697 * 0.27403 * 13 12 11 29 29 H 0.97003 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.05536 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.83897 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.78664 * 179.97438 * 12 11 10 33 33 H 0.96999 * 120.00013 * 325.77693 * 14 13 12 34 34 H 0.97005 * 119.99856 * 0.02562 * 17 15 14 35 35 H 1.08990 * 109.47140 * 59.99826 * 18 17 15 36 36 H 1.08999 * 109.46750 * 299.99888 * 18 17 15 37 37 H 1.08001 * 119.85171 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.92429 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.07055 * 180.27241 * 22 21 20 40 40 H 0.96999 * 120.00015 * 0.02562 * 25 24 23 41 41 H 0.97001 * 119.99159 * 179.72363 * 25 24 23 42 42 H 1.08004 * 120.06986 * 0.02562 * 27 19 18 43 43 H 1.08004 * 120.16055 * 179.74559 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3849 2.1070 -1.3949 5 1 1.4961 2.6201 0.8022 6 1 3.5883 1.4122 0.5924 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2696 9 6 1.3461 -2.4102 -0.3547 10 6 0.2107 -2.3733 -1.1861 11 6 -0.4286 -3.5438 -1.5262 12 6 0.0393 -4.7591 -1.0537 13 6 1.1612 -4.8110 -0.2307 14 7 1.6250 -6.0442 0.2414 15 6 2.9466 -6.2471 0.4108 16 8 3.7417 -5.3943 0.0661 17 7 3.3868 -7.3953 0.9624 18 6 4.8233 -7.6157 1.1471 19 6 5.0474 -8.9658 1.7779 20 6 5.0861 -9.0862 3.1559 21 6 5.2919 -10.3218 3.7429 22 6 5.4538 -11.4441 2.9568 23 6 5.4207 -11.3290 1.5664 24 6 5.5987 -12.5265 0.7178 25 7 5.7989 -13.7318 1.2867 26 8 5.5643 -12.4240 -0.4929 27 6 5.2131 -10.0791 0.9804 28 6 1.8143 -3.6455 0.1260 29 1 -0.4850 0.8401 -0.0004 30 1 -0.1580 -1.4281 -1.5566 31 1 -1.2999 -3.5146 -2.1638 32 1 -0.4693 -5.6722 -1.3256 33 1 0.9953 -6.7529 0.4465 34 1 2.7525 -8.0758 1.2371 35 1 5.2296 -6.8395 1.7953 36 1 5.3237 -7.5796 0.1794 37 1 4.9551 -8.2116 3.7758 38 1 5.3214 -10.4088 4.8190 39 1 5.6100 -12.4089 3.4164 40 1 5.8259 -13.8137 2.2529 41 1 5.9116 -14.5181 0.7299 42 1 5.1827 -9.9838 -0.0950 43 1 2.6822 -3.6844 0.7677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365848369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:39 Heat of formation + Delta-G solvation = -19.694261 kcal Electronic energy + Delta-G solvation = -26967.766216 eV Core-core repulsion = 22977.311343 eV Total energy + Delta-G solvation = -3990.454873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63099 -39.86056 -38.73590 -37.29338 -35.10067 -34.33572 -34.10715 -32.98854 -31.49924 -31.47434 -29.75235 -28.11990 -26.02433 -25.20616 -24.58733 -22.35327 -21.60121 -20.81184 -20.67462 -20.01454 -18.63007 -17.96360 -17.60587 -17.11750 -16.48527 -15.91631 -15.65468 -15.31573 -15.16257 -15.04414 -14.73808 -14.60452 -14.33934 -14.14226 -13.99822 -13.24557 -13.14078 -12.88342 -12.79852 -12.63302 -12.08474 -12.03620 -11.58973 -11.49177 -11.13882 -11.09210 -10.85775 -10.50033 -10.40779 -10.19327 -10.17105 -9.69788 -9.51152 -9.42543 -9.31920 -9.07326 -8.94918 -8.89735 -7.38034 -6.82987 -6.64625 -4.27378 0.36880 0.81656 2.38611 2.78813 2.93377 3.01001 3.10013 3.13369 3.18891 3.26890 3.49573 3.76372 4.01369 4.19973 4.28895 4.40715 4.60231 4.65082 4.71467 4.84295 4.93442 5.18928 5.37747 5.55540 5.66383 5.78435 5.79232 5.86957 6.13193 6.27242 6.29999 6.39475 6.46418 6.53906 6.82579 6.83625 6.85497 7.10740 7.15438 7.30459 7.40709 7.75034 7.78570 7.89031 8.06173 8.17482 8.31070 8.48828 8.72956 8.96028 9.03753 9.10082 10.27712 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021068 B = 0.001943 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.716571 B =14406.944086 C =15103.274881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.119 3.881 10 C -0.173 4.173 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.169 3.831 14 N -0.681 5.681 15 C 0.699 3.301 16 O -0.565 6.565 17 N -0.749 5.749 18 C 0.180 3.820 19 C -0.109 4.109 20 C -0.070 4.070 21 C -0.129 4.129 22 C -0.081 4.081 23 C -0.144 4.144 24 C 0.563 3.437 25 N -0.852 5.852 26 O -0.536 6.536 27 C -0.038 4.038 28 C -0.209 4.209 29 H 0.279 0.721 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.394 0.606 34 H 0.393 0.607 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.400 0.600 41 H 0.405 0.595 42 H 0.140 0.860 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 -23.673 9.545 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.116 3.884 10 C -0.192 4.192 11 C -0.111 4.111 12 C -0.284 4.284 13 C 0.077 3.923 14 N -0.327 5.327 15 C 0.399 3.601 16 O -0.440 6.440 17 N -0.406 5.406 18 C 0.056 3.944 19 C -0.110 4.110 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.100 4.100 23 C -0.147 4.147 24 C 0.349 3.651 25 N -0.416 5.416 26 O -0.413 6.413 27 C -0.058 4.058 28 C -0.231 4.231 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.227 0.773 34 H 0.227 0.773 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.230 0.770 41 H 0.236 0.764 42 H 0.158 0.842 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.704 -22.458 8.497 25.541 hybrid contribution -0.264 -0.483 0.642 0.846 sum 8.440 -22.941 9.139 26.097 Atomic orbital electron populations 1.69835 1.07499 1.28973 1.35943 1.25895 0.94734 1.01223 0.92324 0.86302 0.80641 0.80694 0.79087 1.19385 1.20397 1.18573 1.19588 0.97771 0.90930 1.40465 0.90374 1.17498 0.90891 0.91652 0.88328 1.21334 0.99413 0.96827 1.01663 1.20445 0.98534 0.92687 0.99478 1.20014 1.02619 0.96874 1.08915 1.17227 0.95854 0.82600 0.96640 1.42574 1.05236 1.15824 1.69060 1.15943 0.83004 0.82152 0.78978 1.90987 1.54137 1.43864 1.55027 1.45132 1.07441 1.19655 1.68378 1.19979 0.81360 0.92049 1.00976 1.19966 1.02122 0.95192 0.93719 1.21433 0.95064 0.98140 0.94244 1.21125 1.00999 0.92255 1.00317 1.21310 0.97324 0.99020 0.92368 1.19857 1.07388 0.93969 0.93530 1.18299 0.75596 0.83593 0.87584 1.43750 1.76526 1.09666 1.11696 1.90853 1.50164 1.86007 1.14289 1.21281 0.93148 0.90260 1.01069 1.20993 1.04300 0.90882 1.06916 0.91044 0.86357 0.89086 0.89379 0.77280 0.77336 0.90324 0.90452 0.84900 0.85013 0.85603 0.77008 0.76353 0.84233 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.06 10.94 55.55 0.61 -20.45 16 2 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 3 Si 0.91 19.43 29.59 -169.99 -5.03 14.40 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.46 -12.80 9.05 -37.74 -0.34 -13.14 16 8 H 0.08 2.16 7.90 -52.49 -0.41 1.75 16 9 C 0.12 3.35 5.57 -106.85 -0.59 2.76 16 10 C -0.17 -4.62 8.69 -38.84 -0.34 -4.96 16 11 C -0.09 -2.21 10.02 -39.69 -0.40 -2.61 16 12 C -0.26 -5.93 9.97 -39.10 -0.39 -6.32 16 13 C 0.17 3.93 6.25 -83.76 -0.52 3.41 16 14 N -0.68 -12.46 5.34 -14.27 -0.08 -12.54 16 15 C 0.70 12.84 8.29 -86.92 -0.72 12.12 16 16 O -0.56 -13.10 14.10 5.29 0.07 -13.03 16 17 N -0.75 -9.60 5.55 -66.42 -0.37 -9.97 16 18 C 0.18 2.06 5.79 -5.19 -0.03 2.03 16 19 C -0.11 -0.97 5.24 -104.68 -0.55 -1.52 16 20 C -0.07 -0.50 9.69 -39.49 -0.38 -0.89 16 21 C -0.13 -0.72 10.03 -39.64 -0.40 -1.12 16 22 C -0.08 -0.44 9.54 -39.19 -0.37 -0.82 16 23 C -0.14 -1.18 5.87 -104.97 -0.62 -1.80 16 24 C 0.56 5.11 8.05 -12.33 -0.10 5.01 16 25 N -0.85 -3.85 8.82 30.53 0.27 -3.58 16 26 O -0.54 -7.27 17.18 5.32 0.09 -7.18 16 27 C -0.04 -0.36 9.24 -39.18 -0.36 -0.73 16 28 C -0.21 -5.55 8.39 -38.68 -0.32 -5.88 16 29 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 30 H 0.12 3.24 6.17 -52.48 -0.32 2.92 16 31 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 32 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.39 5.58 8.84 -40.82 -0.36 5.22 16 34 H 0.39 3.93 8.48 -40.82 -0.35 3.58 16 35 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.13 0.26 6.41 -52.48 -0.34 -0.07 16 40 H 0.40 0.58 6.86 -40.82 -0.28 0.30 16 41 H 0.41 1.42 8.93 -40.82 -0.36 1.05 16 42 H 0.14 1.49 7.65 -52.48 -0.40 1.09 16 43 H 0.11 2.92 6.48 -52.48 -0.34 2.58 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -35.93 372.11 -10.19 -46.12 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -4.83 Total: 13.20 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -6.53 Total: -12.58 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.43 Total: -46.55 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.20 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.93 -10.19 -46.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365848369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.424 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds