Wall clock time and date at job start Tue Mar 31 2020 22:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31529 * 1 3 3 Si 1.86801 * 119.99535 * 2 1 4 4 H 1.48499 * 109.46985 * 239.99695 * 3 2 1 5 5 H 1.48493 * 109.47328 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46845 * 119.99899 * 3 2 1 7 7 C 1.38691 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00071 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99721 * 359.97438 * 7 2 1 10 10 C 1.35521 * 116.99612 * 174.91962 * 9 7 2 11 11 C 1.38841 * 120.16553 * 5.20175 * 10 9 7 12 12 C 1.38028 * 120.07097 * 180.29841 * 11 10 9 13 13 C 1.38569 * 120.40224 * 359.68309 * 12 11 10 14 14 C 1.37827 * 120.32720 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91682 * 0.02562 * 14 13 12 16 16 C 1.47538 * 120.19605 * 179.97438 * 15 14 13 17 17 O 1.21590 * 119.99805 * 134.94452 * 16 15 14 18 18 N 1.34774 * 119.99885 * 314.94250 * 16 15 14 19 19 C 1.47025 * 125.65297 * 354.80917 * 18 16 15 20 20 C 1.54322 * 107.27139 * 181.09252 * 19 18 16 21 21 C 1.55157 * 102.94358 * 22.18905 * 20 19 18 22 22 H 1.08998 * 111.03334 * 82.58835 * 21 20 19 23 23 C 1.50694 * 111.00296 * 206.42164 * 21 20 19 24 24 C 1.38393 * 120.00320 * 78.65293 * 23 21 20 25 25 N 1.32121 * 120.00310 * 180.02562 * 24 23 21 26 26 C 1.32154 * 119.99676 * 0.02562 * 25 24 23 27 27 C 1.38338 * 120.00339 * 0.25055 * 26 25 24 28 28 N 1.32129 * 120.00455 * 258.67315 * 23 21 20 29 29 C 1.47427 * 125.64593 * 174.84244 * 18 16 15 30 30 H 0.96998 * 119.99925 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.95846 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.79272 * 179.70081 * 12 11 10 33 33 H 1.07998 * 119.83320 * 180.02562 * 13 12 11 34 34 H 1.07999 * 120.04124 * 180.02562 * 14 13 12 35 35 H 1.08996 * 109.87643 * 300.51207 * 19 18 16 36 36 H 1.09005 * 109.87990 * 61.67262 * 19 18 16 37 37 H 1.09005 * 110.71510 * 263.82802 * 20 19 18 38 38 H 1.08998 * 110.71755 * 140.56128 * 20 19 18 39 39 H 1.08009 * 119.99592 * 0.02562 * 24 23 21 40 40 H 1.08001 * 119.99937 * 179.97438 * 26 25 24 41 41 H 1.08002 * 120.00228 * 179.72543 * 27 26 25 42 42 H 1.08999 * 110.36710 * 37.00689 * 29 18 16 43 43 H 1.08994 * 110.37245 * 274.68127 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0088 -1.2011 -0.0005 8 1 3.0888 -1.2010 -0.0001 9 8 1.3347 -2.3686 -0.0005 10 6 2.0687 -3.5027 -0.1080 11 6 3.4557 -3.4392 -0.1032 12 6 4.2013 -4.5950 -0.2190 13 6 3.5745 -5.8254 -0.3340 14 6 2.1987 -5.9082 -0.3346 15 6 1.4309 -4.7471 -0.2193 16 6 -0.0422 -4.8286 -0.2197 17 8 -0.6864 -4.1940 0.5932 18 7 -0.6738 -5.6062 -1.1212 19 6 -0.0302 -6.3379 -2.2221 20 6 -1.1455 -7.0640 -3.0035 21 6 -2.4131 -6.2464 -2.6402 22 1 -2.4979 -5.3577 -3.2655 23 6 -3.6527 -7.0970 -2.7446 24 6 -3.9696 -7.9854 -1.7319 25 7 -5.0561 -8.7315 -1.8236 26 6 -5.8400 -8.6298 -2.8827 27 6 -5.5202 -7.7458 -3.8977 28 7 -4.4368 -6.9949 -3.8031 29 6 -2.1247 -5.8636 -1.1672 30 1 -0.4850 0.8400 -0.0004 31 1 3.9515 -2.4840 -0.0141 32 1 5.2800 -4.5399 -0.2196 33 1 4.1669 -6.7239 -0.4237 34 1 1.7149 -6.8696 -0.4241 35 1 0.4878 -5.6390 -2.8788 36 1 0.6755 -7.0655 -1.8211 37 1 -1.2427 -8.0962 -2.6670 38 1 -0.9543 -7.0232 -4.0758 39 1 -3.3287 -8.0688 -0.8665 40 1 -6.7280 -9.2399 -2.9579 41 1 -6.1585 -7.6659 -4.7652 42 1 -2.6782 -4.9653 -0.8935 43 1 -2.3851 -6.6877 -0.5031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413654451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:33 Heat of formation + Delta-G solvation = 30.284254 kcal Electronic energy + Delta-G solvation = -28472.906124 eV Core-core repulsion = 24484.618482 eV Total energy + Delta-G solvation = -3988.287642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47671 -39.89537 -38.70365 -36.96548 -36.36574 -34.58041 -33.07031 -32.37139 -30.88068 -30.16186 -28.98147 -28.62808 -25.51277 -25.16312 -24.72730 -23.48211 -22.07505 -21.55603 -20.87034 -19.30742 -18.08460 -17.88722 -17.47343 -17.26448 -16.43599 -16.15304 -15.50080 -15.10464 -15.01104 -14.72812 -14.59341 -14.07729 -14.02645 -13.77015 -13.54581 -13.40608 -13.28124 -12.86434 -12.61963 -12.41998 -12.22345 -11.86581 -11.83750 -11.73883 -11.52670 -11.33354 -11.24474 -11.13268 -10.95241 -10.90907 -10.70959 -10.48253 -9.63368 -9.46908 -9.31665 -9.06881 -8.89922 -8.34629 -8.20991 -7.34975 -6.48295 -4.08598 0.47345 0.86327 1.77094 2.28476 3.10406 3.12164 3.15004 3.20748 3.38063 3.53998 3.75641 3.91514 3.98877 4.17862 4.38918 4.46885 4.52084 4.63421 4.80648 4.96603 5.02981 5.08280 5.10610 5.15159 5.23445 5.32628 5.39471 5.48641 5.62314 5.69391 5.77992 5.86402 5.94961 6.01492 6.03737 6.08697 6.13498 6.51594 6.56500 6.72556 6.92863 7.00585 7.03415 7.22723 7.27355 7.50781 7.66150 7.88234 7.97231 8.87047 8.93573 9.62042 10.66881 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002936 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.333726 B = 9534.184156 C =10970.052070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.401 4.401 8 H 0.094 0.906 9 O -0.144 6.144 10 C 0.189 3.811 11 C -0.235 4.235 12 C -0.053 4.053 13 C -0.226 4.226 14 C -0.041 4.041 15 C -0.217 4.217 16 C 0.591 3.409 17 O -0.511 6.511 18 N -0.624 5.624 19 C 0.104 3.896 20 C -0.118 4.118 21 C -0.054 4.054 22 H 0.110 0.890 23 C 0.102 3.898 24 C 0.053 3.947 25 N -0.435 5.435 26 C 0.038 3.962 27 C 0.054 3.946 28 N -0.435 5.435 29 C 0.115 3.885 30 H 0.272 0.728 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.085 0.915 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -16.485 -8.390 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.477 4.477 8 H 0.112 0.888 9 O -0.044 6.044 10 C 0.130 3.870 11 C -0.254 4.254 12 C -0.072 4.072 13 C -0.245 4.245 14 C -0.060 4.060 15 C -0.221 4.221 16 C 0.382 3.618 17 O -0.385 6.385 18 N -0.362 5.362 19 C -0.020 4.020 20 C -0.156 4.156 21 C -0.074 4.074 22 H 0.128 0.872 23 C -0.039 4.039 24 C -0.107 4.107 25 N -0.149 5.149 26 C -0.121 4.121 27 C -0.106 4.106 28 N -0.149 5.149 29 C -0.009 4.009 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.190 0.810 40 H 0.186 0.814 41 H 0.187 0.813 42 H 0.104 0.896 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.945 -15.808 -7.826 18.319 hybrid contribution 0.449 0.753 -0.130 0.886 sum -4.496 -15.055 -7.956 17.611 Atomic orbital electron populations 1.70077 1.06028 1.27989 1.43395 1.25369 0.95822 0.98974 0.96136 0.85773 0.78761 0.79581 0.79274 1.19371 1.20162 1.19321 1.21386 0.91862 0.80796 1.53613 0.88829 1.84044 1.34101 1.11299 1.74929 1.19216 0.89976 0.87105 0.90656 1.21134 0.93239 0.99389 1.11683 1.20893 0.98667 0.92293 0.95340 1.20472 0.93975 0.97110 1.12914 1.20783 0.93652 0.95671 0.95885 1.18651 0.91479 0.92414 1.19586 1.17878 0.87384 0.76990 0.79597 1.90830 1.67486 1.41798 1.38412 1.48293 1.06730 1.50132 1.31021 1.22093 0.95373 0.95668 0.88817 1.22714 0.92729 0.98856 1.01307 1.21236 0.89697 0.98164 0.98319 0.87189 1.21923 0.95768 0.95369 0.90850 1.23735 0.94753 0.92686 0.99538 1.68494 1.03216 1.20358 1.22805 1.23784 0.99631 0.98029 0.90669 1.23797 0.94388 0.92654 0.99764 1.68275 1.03327 1.20608 1.22731 1.22187 0.83178 1.01729 0.93781 0.91749 0.85040 0.87150 0.87197 0.86589 0.90901 0.90807 0.90514 0.89434 0.81029 0.81382 0.81287 0.89637 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.26 13.67 55.48 0.76 -24.50 16 2 C 0.04 1.22 5.49 -17.51 -0.10 1.12 16 3 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.40 -11.25 9.49 30.90 0.29 -10.96 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 9 O -0.14 -4.21 8.69 -11.69 -0.10 -4.32 16 10 C 0.19 4.62 6.63 -38.59 -0.26 4.37 16 11 C -0.24 -4.97 9.16 -39.44 -0.36 -5.33 16 12 C -0.05 -0.92 10.03 -39.54 -0.40 -1.32 16 13 C -0.23 -3.61 10.02 -39.61 -0.40 -4.01 16 14 C -0.04 -0.70 8.43 -39.20 -0.33 -1.03 16 15 C -0.22 -4.66 5.39 -104.81 -0.56 -5.22 16 16 C 0.59 13.05 7.16 -12.47 -0.09 12.96 16 17 O -0.51 -13.77 16.60 -7.20 -0.12 -13.89 16 18 N -0.62 -10.41 3.33 -171.75 -0.57 -10.98 16 19 C 0.10 1.29 5.92 -3.06 -0.02 1.27 16 20 C -0.12 -1.13 6.41 -24.90 -0.16 -1.29 16 21 C -0.05 -0.62 3.43 -89.63 -0.31 -0.93 16 22 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 23 C 0.10 1.13 5.89 -82.41 -0.49 0.64 16 24 C 0.05 0.55 10.30 -17.37 -0.18 0.38 16 25 N -0.43 -4.65 10.50 -13.06 -0.14 -4.78 16 26 C 0.04 0.31 11.22 -17.38 -0.20 0.12 16 27 C 0.05 0.45 11.22 -17.38 -0.20 0.26 16 28 N -0.43 -4.88 10.42 -9.29 -0.10 -4.98 16 29 C 0.11 1.62 6.23 -2.53 -0.02 1.60 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.13 2.74 5.63 -52.49 -0.30 2.45 16 32 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 33 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.60 6.19 -52.49 -0.32 1.28 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.80 5.76 -51.93 -0.30 0.51 16 37 H 0.08 0.63 8.01 -51.93 -0.42 0.22 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.17 1.57 6.11 -52.48 -0.32 1.24 16 40 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 43 H 0.07 0.81 5.73 -51.93 -0.30 0.51 16 LS Contribution 362.10 15.07 5.46 5.46 Total: -1.00 -36.35 362.10 -8.32 -44.67 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.74 Total: 5.28 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.75 Total: -7.38 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.05 Total: -45.24 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.22 Total: -18.21 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.35 -8.32 -44.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413654451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.955 kcal (2) G-P(sol) polarization free energy of solvation -36.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds