Wall clock time and date at job start Tue Mar 31 2020 22:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31529 * 1 3 3 Si 1.86801 * 119.99535 * 2 1 4 4 H 1.48499 * 109.46985 * 239.99695 * 3 2 1 5 5 H 1.48493 * 109.47328 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46845 * 119.99899 * 3 2 1 7 7 C 1.38691 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00071 * 180.02562 * 7 2 1 9 9 O 1.34815 * 119.99721 * 359.97438 * 7 2 1 10 10 C 1.35521 * 116.99612 * 174.91962 * 9 7 2 11 11 C 1.38841 * 120.16553 * 5.20175 * 10 9 7 12 12 C 1.38028 * 120.07097 * 180.29841 * 11 10 9 13 13 C 1.38569 * 120.40224 * 359.68309 * 12 11 10 14 14 C 1.37827 * 120.32720 * 0.02562 * 13 12 11 15 15 C 1.39667 * 119.91682 * 0.02562 * 14 13 12 16 16 C 1.47538 * 120.19605 * 179.97438 * 15 14 13 17 17 O 1.21590 * 119.99805 * 134.94452 * 16 15 14 18 18 N 1.34774 * 119.99885 * 314.94250 * 16 15 14 19 19 C 1.47025 * 125.65297 * 354.80917 * 18 16 15 20 20 C 1.54322 * 107.27139 * 181.09252 * 19 18 16 21 21 C 1.55157 * 102.94358 * 22.18905 * 20 19 18 22 22 H 1.08998 * 111.03334 * 82.58835 * 21 20 19 23 23 C 1.50694 * 111.00296 * 206.42164 * 21 20 19 24 24 C 1.38393 * 120.00320 * 78.65293 * 23 21 20 25 25 N 1.32121 * 120.00310 * 180.02562 * 24 23 21 26 26 C 1.32154 * 119.99676 * 0.02562 * 25 24 23 27 27 C 1.38338 * 120.00339 * 0.25055 * 26 25 24 28 28 N 1.32129 * 120.00455 * 258.67315 * 23 21 20 29 29 C 1.47427 * 125.64593 * 174.84244 * 18 16 15 30 30 H 0.96998 * 119.99925 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.95846 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.79272 * 179.70081 * 12 11 10 33 33 H 1.07998 * 119.83320 * 180.02562 * 13 12 11 34 34 H 1.07999 * 120.04124 * 180.02562 * 14 13 12 35 35 H 1.08996 * 109.87643 * 300.51207 * 19 18 16 36 36 H 1.09005 * 109.87990 * 61.67262 * 19 18 16 37 37 H 1.09005 * 110.71510 * 263.82802 * 20 19 18 38 38 H 1.08998 * 110.71755 * 140.56128 * 20 19 18 39 39 H 1.08009 * 119.99592 * 0.02562 * 24 23 21 40 40 H 1.08001 * 119.99937 * 179.97438 * 26 25 24 41 41 H 1.08002 * 120.00228 * 179.72543 * 27 26 25 42 42 H 1.08999 * 110.36710 * 37.00689 * 29 18 16 43 43 H 1.08994 * 110.37245 * 274.68127 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0088 -1.2011 -0.0005 8 1 3.0888 -1.2010 -0.0001 9 8 1.3347 -2.3686 -0.0005 10 6 2.0687 -3.5027 -0.1080 11 6 3.4557 -3.4392 -0.1032 12 6 4.2013 -4.5950 -0.2190 13 6 3.5745 -5.8254 -0.3340 14 6 2.1987 -5.9082 -0.3346 15 6 1.4309 -4.7471 -0.2193 16 6 -0.0422 -4.8286 -0.2197 17 8 -0.6864 -4.1940 0.5932 18 7 -0.6738 -5.6062 -1.1212 19 6 -0.0302 -6.3379 -2.2221 20 6 -1.1455 -7.0640 -3.0035 21 6 -2.4131 -6.2464 -2.6402 22 1 -2.4979 -5.3577 -3.2655 23 6 -3.6527 -7.0970 -2.7446 24 6 -3.9696 -7.9854 -1.7319 25 7 -5.0561 -8.7315 -1.8236 26 6 -5.8400 -8.6298 -2.8827 27 6 -5.5202 -7.7458 -3.8977 28 7 -4.4368 -6.9949 -3.8031 29 6 -2.1247 -5.8636 -1.1672 30 1 -0.4850 0.8400 -0.0004 31 1 3.9515 -2.4840 -0.0141 32 1 5.2800 -4.5399 -0.2196 33 1 4.1669 -6.7239 -0.4237 34 1 1.7149 -6.8696 -0.4241 35 1 0.4878 -5.6390 -2.8788 36 1 0.6755 -7.0655 -1.8211 37 1 -1.2427 -8.0962 -2.6670 38 1 -0.9543 -7.0232 -4.0758 39 1 -3.3287 -8.0688 -0.8665 40 1 -6.7280 -9.2399 -2.9579 41 1 -6.1585 -7.6659 -4.7652 42 1 -2.6782 -4.9653 -0.8935 43 1 -2.3851 -6.6877 -0.5031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413654451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:32 Heat of formation + Delta-G solvation = 4.099989 kcal Electronic energy + Delta-G solvation = -28474.041559 eV Core-core repulsion = 24484.618482 eV Total energy + Delta-G solvation = -3989.423077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27392 -41.40777 -40.22617 -38.46471 -38.04155 -35.39889 -34.35829 -34.14544 -32.21119 -31.31119 -30.59920 -29.67765 -27.43611 -26.27786 -25.58410 -24.60445 -23.42506 -23.12577 -21.84512 -20.77870 -19.91311 -18.94740 -18.67379 -18.22363 -17.93033 -17.18048 -16.81444 -16.50626 -16.37098 -16.00176 -15.80685 -15.62375 -15.47798 -15.20579 -14.86601 -14.78697 -14.39660 -14.26633 -13.88017 -13.66632 -13.57578 -13.52967 -13.00862 -12.85574 -12.63580 -12.60540 -12.56766 -12.45938 -12.31231 -12.16354 -12.09700 -11.78230 -11.46415 -10.84478 -10.80725 -10.19512 -10.06196 -9.88221 -9.61450 -9.05464 -8.48543 -6.19257 -0.24039 0.11804 0.21191 0.71498 1.31229 1.44062 1.49181 1.74146 2.02947 2.14565 2.64528 2.82144 2.95220 3.15769 3.24017 3.38091 3.41878 3.48300 3.57126 3.85074 3.90138 3.97562 4.07839 4.22394 4.24999 4.28630 4.33268 4.45828 4.50869 4.53738 4.61562 4.67813 4.76688 4.80670 4.93905 4.97118 5.06889 5.13429 5.14931 5.35523 5.40171 5.52109 5.60971 5.70344 5.94377 6.16852 6.28716 6.46364 6.78512 6.92512 7.23633 7.75424 8.73135 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013620 B = 0.002936 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.333726 B = 9534.184156 C =10970.052070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.024 4.024 3 Si 1.023 2.977 4 H -0.251 1.251 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.422 4.422 8 H 0.109 0.891 9 O -0.210 6.210 10 C 0.146 3.854 11 C -0.251 4.251 12 C -0.044 4.044 13 C -0.192 4.192 14 C -0.034 4.034 15 C -0.230 4.230 16 C 0.579 3.421 17 O -0.581 6.581 18 N -0.619 5.619 19 C 0.096 3.904 20 C -0.101 4.101 21 C -0.042 4.042 22 H 0.090 0.910 23 C 0.090 3.910 24 C 0.045 3.955 25 N -0.457 5.457 26 C 0.046 3.954 27 C 0.056 3.944 28 N -0.461 5.461 29 C 0.110 3.890 30 H 0.271 0.729 31 H 0.124 0.876 32 H 0.155 0.845 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.179 0.821 40 H 0.206 0.794 41 H 0.205 0.795 42 H 0.047 0.953 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 -20.660 -10.164 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.175 1.175 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.126 0.874 9 O -0.114 6.114 10 C 0.092 3.908 11 C -0.271 4.271 12 C -0.062 4.062 13 C -0.210 4.210 14 C -0.052 4.052 15 C -0.235 4.235 16 C 0.371 3.629 17 O -0.461 6.461 18 N -0.353 5.353 19 C -0.025 4.025 20 C -0.139 4.139 21 C -0.063 4.063 22 H 0.108 0.892 23 C -0.050 4.050 24 C -0.113 4.113 25 N -0.171 5.171 26 C -0.114 4.114 27 C -0.104 4.104 28 N -0.176 5.176 29 C -0.013 4.013 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.175 0.825 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.196 0.804 40 H 0.223 0.777 41 H 0.221 0.779 42 H 0.065 0.935 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.699 -20.086 -9.647 22.445 hybrid contribution -0.194 1.561 0.322 1.606 sum -2.893 -18.525 -9.325 20.940 Atomic orbital electron populations 1.70273 1.08429 1.28786 1.47661 1.26758 0.96746 1.03168 0.95535 0.84612 0.77337 0.73767 0.80215 1.17519 1.19899 1.17909 1.21947 0.92722 0.81436 1.53679 0.87411 1.84039 1.35849 1.12562 1.78974 1.19974 0.91761 0.87132 0.91939 1.21288 0.92110 1.01054 1.12619 1.21421 1.00740 0.91195 0.92841 1.21177 0.93665 0.98474 1.07692 1.21273 0.94319 0.95486 0.94130 1.19064 0.91690 0.93123 1.19589 1.18212 0.88014 0.76936 0.79784 1.90783 1.68804 1.44844 1.41659 1.48283 1.08092 1.48565 1.30358 1.22425 0.96770 0.95723 0.87617 1.22713 0.89955 0.99246 1.01984 1.21007 0.91604 0.98150 0.95549 0.89163 1.21690 0.95827 0.95890 0.91612 1.23781 0.95211 0.92800 0.99547 1.68533 1.03629 1.20901 1.24040 1.24424 0.99904 0.97597 0.89492 1.24407 0.93601 0.91540 1.00866 1.68236 1.04498 1.21730 1.23167 1.22338 0.81446 1.00905 0.96598 0.91982 0.85832 0.82748 0.81668 0.82518 0.91924 0.87960 0.87903 0.87582 0.80388 0.77747 0.77857 0.93482 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.98 13.67 21.62 0.30 -59.69 16 2 C -0.02 -1.42 5.49 84.85 0.47 -0.95 16 3 Si 1.02 44.28 29.55 68.60 2.03 46.30 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.42 -25.52 9.49 67.93 0.64 -24.87 16 8 H 0.11 5.81 5.20 -2.91 -0.02 5.80 16 9 O -0.21 -13.41 8.69 -8.13 -0.07 -13.48 16 10 C 0.15 7.50 6.63 22.91 0.15 7.65 16 11 C -0.25 -10.64 9.16 22.36 0.20 -10.44 16 12 C -0.04 -1.34 10.03 22.30 0.22 -1.11 16 13 C -0.19 -5.00 10.02 22.25 0.22 -4.78 16 14 C -0.03 -1.03 8.43 22.52 0.19 -0.84 16 15 C -0.23 -10.08 5.39 -19.98 -0.11 -10.18 16 16 C 0.58 27.16 7.16 86.70 0.62 27.78 16 17 O -0.58 -34.43 16.60 7.94 0.13 -34.29 16 18 N -0.62 -21.24 3.33 -815.54 -2.71 -23.96 16 19 C 0.10 2.22 5.92 86.73 0.51 2.73 16 20 C -0.10 -1.71 6.41 31.78 0.20 -1.50 16 21 C -0.04 -0.98 3.43 -10.15 -0.03 -1.02 16 22 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 23 C 0.09 1.92 5.89 42.55 0.25 2.17 16 24 C 0.05 0.90 10.30 84.69 0.87 1.77 16 25 N -0.46 -8.92 10.50 -195.22 -2.05 -10.97 16 26 C 0.05 0.62 11.22 84.67 0.95 1.57 16 27 C 0.06 0.80 11.22 84.67 0.95 1.75 16 28 N -0.46 -9.80 10.42 -183.30 -1.91 -11.71 16 29 C 0.11 3.28 6.23 86.85 0.54 3.82 16 30 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 31 H 0.12 5.30 5.63 -2.91 -0.02 5.28 16 32 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 33 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 34 H 0.16 3.47 6.19 -2.91 -0.02 3.45 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.78 5.76 -2.38 -0.01 1.77 16 37 H 0.10 1.28 8.01 -2.38 -0.02 1.26 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.18 3.07 6.11 -2.91 -0.02 3.05 16 40 H 0.21 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.05 1.75 7.99 -2.39 -0.02 1.73 16 43 H 0.09 2.27 5.73 -2.39 -0.01 2.26 16 Total: -1.00 -93.51 362.10 3.64 -89.87 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 1.07 Total: 24.39 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 6.86 Total: -6.46 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -6.38 Total: -106.32 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: 0.06 Total: -47.78 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -93.51 3.64 -89.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413654451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.967 kcal (2) G-P(sol) polarization free energy of solvation -93.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds