Wall clock time and date at job start Tue Mar 31 2020 22:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86795 * 120.00176 * 2 1 4 4 H 1.48496 * 109.47453 * 270.00049 * 3 2 1 5 5 H 1.48504 * 109.47091 * 29.99716 * 3 2 1 6 6 H 1.48503 * 109.47317 * 149.99689 * 3 2 1 7 7 C 1.39929 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00028 * 168.99580 * 7 2 1 9 9 C 1.41413 * 120.00270 * 348.99311 * 7 2 1 10 10 C 1.40780 * 120.20524 * 331.79069 * 9 7 2 11 11 C 1.37646 * 119.88640 * 180.02562 * 10 9 7 12 12 C 1.38532 * 120.32498 * 0.02562 * 11 10 9 13 13 C 1.39263 * 120.42584 * 359.97438 * 12 11 10 14 14 N 1.39857 * 119.95139 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00113 * 146.35588 * 14 13 12 16 16 O 1.21569 * 120.00427 * 354.86602 * 15 14 13 17 17 C 1.47816 * 120.00066 * 174.59062 * 15 14 13 18 18 C 1.39586 * 120.14480 * 359.72570 * 17 15 14 19 19 C 1.37953 * 119.85334 * 179.74511 * 18 17 15 20 20 C 1.38364 * 120.14624 * 0.53015 * 19 18 17 21 21 C 1.50701 * 119.85464 * 179.72217 * 20 19 18 22 22 N 1.46505 * 109.46603 * 270.02133 * 21 20 19 23 23 C 1.34781 * 119.99455 * 180.02562 * 22 21 20 24 24 N 1.34772 * 119.99624 * 180.02562 * 23 22 21 25 25 O 1.21582 * 120.00048 * 359.97438 * 23 22 21 26 26 C 1.38367 * 120.28989 * 359.74317 * 20 19 18 27 27 C 1.37951 * 120.15026 * 359.97438 * 26 20 19 28 28 C 1.38308 * 120.10333 * 0.25924 * 13 12 11 29 29 H 0.97003 * 119.99874 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.05534 * 0.03968 * 10 9 7 31 31 H 1.08002 * 119.83724 * 179.97438 * 11 10 9 32 32 H 1.07993 * 119.78531 * 179.97438 * 12 11 10 33 33 H 0.97001 * 120.00079 * 326.36513 * 14 13 12 34 34 H 1.08008 * 120.07656 * 0.02562 * 18 17 15 35 35 H 1.08006 * 119.93176 * 180.27756 * 19 18 17 36 36 H 1.08996 * 109.47399 * 30.02203 * 21 20 19 37 37 H 1.08998 * 109.47184 * 150.02659 * 21 20 19 38 38 H 0.96992 * 120.00346 * 0.02562 * 22 21 20 39 39 H 0.96998 * 120.00839 * 359.97438 * 24 23 22 40 40 H 0.97005 * 119.99787 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.91964 * 179.97438 * 26 20 19 42 42 H 1.08001 * 120.07255 * 180.02562 * 27 26 20 43 43 H 1.07991 * 120.16390 * 179.72597 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4401 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0730 -1.2206 -0.1780 9 6 1.3203 -2.4252 0.2349 10 6 0.1511 -2.4366 1.0189 11 6 -0.5126 -3.6215 1.2433 12 6 -0.0355 -4.8039 0.7016 13 6 1.1198 -4.8078 -0.0759 14 7 1.5930 -6.0074 -0.6174 15 6 2.2053 -6.0096 -1.8180 16 8 2.2639 -4.9867 -2.4724 17 6 2.8110 -7.2543 -2.3364 18 6 2.7556 -8.4277 -1.5825 19 6 3.3183 -9.5873 -2.0745 20 6 3.9462 -9.5861 -3.3074 21 6 4.5641 -10.8550 -3.8358 22 7 5.9596 -10.9378 -3.3974 23 6 6.7162 -11.9948 -3.7537 24 7 7.9998 -12.0712 -3.3500 25 8 6.2405 -12.8797 -4.4385 26 6 4.0096 -8.4250 -4.0573 27 6 3.4459 -7.2600 -3.5796 28 6 1.8034 -3.6282 -0.3086 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2245 -1.5174 1.4434 31 1 -1.4093 -3.6294 1.8452 32 1 -0.5629 -5.7285 0.8836 33 1 1.4803 -6.8378 -0.1289 34 1 2.2693 -8.4291 -0.6181 35 1 3.2722 -10.4970 -1.4942 36 1 4.0120 -11.7141 -3.4547 37 1 4.5251 -10.8520 -4.9250 38 1 6.3390 -10.2321 -2.8508 39 1 8.3793 -11.3655 -2.8034 40 1 8.5443 -12.8321 -3.6062 41 1 4.5016 -8.4308 -5.0187 42 1 3.4958 -6.3545 -4.1661 43 1 2.7019 -3.6308 -0.9077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417869270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:57 Heat of formation + Delta-G solvation = -47.045425 kcal Electronic energy + Delta-G solvation = -26909.628947 eV Core-core repulsion = 22917.988038 eV Total energy + Delta-G solvation = -3991.640909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64545 -40.88541 -39.90258 -38.82644 -36.28132 -35.93887 -34.90736 -34.58105 -32.42433 -32.02288 -31.75821 -29.95388 -27.50285 -27.22156 -24.27369 -23.71552 -22.90066 -22.49901 -22.11022 -21.13177 -19.72056 -19.32758 -18.86199 -18.30524 -17.48164 -17.12842 -16.51809 -16.48465 -16.27888 -16.12640 -16.10442 -15.77667 -15.68513 -15.14756 -14.95202 -14.74900 -14.57304 -14.32966 -13.99284 -13.70492 -13.64989 -13.41349 -13.13888 -12.84195 -12.60605 -12.59613 -12.22983 -12.07887 -11.98056 -11.59935 -11.54078 -11.28694 -10.98804 -10.70925 -10.68324 -10.03986 -9.99565 -9.96342 -9.37992 -8.74307 -8.58789 -6.39480 -0.36857 0.35299 0.90666 0.99626 1.35721 1.46843 1.51059 1.74641 2.12006 2.15720 2.19196 2.21948 2.73126 2.85664 3.47722 3.71301 3.72001 3.73786 3.78900 3.95732 4.24924 4.33745 4.45248 4.60272 4.62576 4.66284 4.81171 5.00512 5.01508 5.08515 5.10717 5.16871 5.21421 5.30969 5.36949 5.41995 5.46516 5.73392 5.81568 5.83985 5.89600 6.06389 6.06874 6.10088 6.33229 6.57872 6.67735 6.92960 6.99027 7.08599 7.23452 7.66687 8.36437 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.001927 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.162462 B =14526.709289 C =15316.952670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.031 3.969 3 Si 0.986 3.014 4 H -0.267 1.267 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.066 0.934 9 C 0.086 3.914 10 C -0.191 4.191 11 C -0.093 4.093 12 C -0.245 4.245 13 C 0.153 3.847 14 N -0.649 5.649 15 C 0.540 3.460 16 O -0.566 6.566 17 C -0.135 4.135 18 C -0.081 4.081 19 C -0.095 4.095 20 C -0.076 4.076 21 C 0.182 3.818 22 N -0.731 5.731 23 C 0.700 3.300 24 N -0.850 5.850 25 O -0.646 6.646 26 C -0.100 4.100 27 C -0.077 4.077 28 C -0.233 4.233 29 H 0.287 0.713 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.421 0.579 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.411 0.589 39 H 0.414 0.586 40 H 0.420 0.580 41 H 0.149 0.851 42 H 0.120 0.880 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.028 -21.392 -1.848 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.530 4.530 8 H 0.084 0.916 9 C 0.083 3.917 10 C -0.211 4.211 11 C -0.112 4.112 12 C -0.266 4.266 13 C 0.060 3.940 14 N -0.295 5.295 15 C 0.330 3.670 16 O -0.445 6.445 17 C -0.138 4.138 18 C -0.100 4.100 19 C -0.113 4.113 20 C -0.076 4.076 21 C 0.058 3.942 22 N -0.388 5.388 23 C 0.398 3.602 24 N -0.419 5.419 25 O -0.529 6.529 26 C -0.118 4.118 27 C -0.096 4.096 28 C -0.254 4.254 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.143 0.857 32 H 0.152 0.848 33 H 0.260 0.740 34 H 0.169 0.831 35 H 0.179 0.821 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.248 0.752 39 H 0.244 0.756 40 H 0.253 0.747 41 H 0.167 0.833 42 H 0.138 0.862 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.350 -21.206 -2.884 23.773 hybrid contribution 0.639 1.283 0.330 1.470 sum 10.989 -19.923 -2.555 22.896 Atomic orbital electron populations 1.69853 1.08723 1.30323 1.36914 1.26749 0.95740 1.04404 0.91366 0.85161 0.79059 0.75854 0.79319 1.19167 1.18418 1.18260 1.19746 0.95831 0.91977 1.45465 0.91613 1.17869 0.92581 0.92448 0.88820 1.21380 0.99370 0.97504 1.02808 1.20871 0.98873 0.92192 0.99236 1.20511 0.98077 0.98768 1.09249 1.17510 0.94241 0.85308 0.96917 1.43212 1.57431 1.09487 1.19407 1.19102 0.78022 0.89179 0.80690 1.90831 1.59107 1.35919 1.58614 1.19871 1.03525 0.92747 0.97688 1.21549 0.97740 0.90974 0.99712 1.21308 0.96368 0.98546 0.95111 1.20087 0.98235 0.94397 0.94920 1.20011 0.80346 0.94201 0.99657 1.44989 1.12151 1.23980 1.57658 1.16168 0.82251 0.82074 0.79699 1.42832 1.10601 1.29589 1.58830 1.90954 1.73993 1.42162 1.45761 1.21192 0.98879 0.90894 1.00846 1.21302 0.94982 0.99276 0.94044 1.20938 1.03373 0.93270 1.07852 0.90200 0.87538 0.85722 0.84766 0.73980 0.83123 0.82052 0.90013 0.90760 0.75248 0.75577 0.74698 0.83343 0.86233 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.47 10.81 21.82 0.24 -45.24 16 2 C 0.03 1.64 5.25 85.25 0.45 2.09 16 3 Si 0.99 40.44 29.57 68.60 2.03 42.47 16 4 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.50 -29.07 9.06 23.46 0.21 -28.86 16 8 H 0.07 3.77 7.87 -2.91 -0.02 3.74 16 9 C 0.09 4.94 5.55 -21.31 -0.12 4.82 16 10 C -0.19 -10.26 8.66 22.75 0.20 -10.06 16 11 C -0.09 -4.21 10.02 22.20 0.22 -3.98 16 12 C -0.25 -10.13 9.97 22.59 0.23 -9.90 16 13 C 0.15 6.86 6.26 38.12 0.24 7.10 16 14 N -0.65 -22.20 5.28 -306.27 -1.62 -23.82 16 15 C 0.54 19.70 7.50 86.78 0.65 20.35 16 16 O -0.57 -27.07 14.06 -3.93 -0.06 -27.13 16 17 C -0.13 -3.43 5.87 -20.09 -0.12 -3.55 16 18 C -0.08 -1.33 9.54 22.53 0.21 -1.12 16 19 C -0.10 -1.11 9.68 22.23 0.22 -0.90 16 20 C -0.08 -0.94 5.25 -19.80 -0.10 -1.05 16 21 C 0.18 2.15 5.79 85.63 0.50 2.64 16 22 N -0.73 -7.61 5.55 -482.29 -2.68 -10.29 16 23 C 0.70 10.59 8.84 179.05 1.58 12.18 16 24 N -0.85 -5.69 8.88 -184.75 -1.64 -7.33 16 25 O -0.65 -16.43 17.18 -3.97 -0.07 -16.50 16 26 C -0.10 -1.58 9.68 22.23 0.22 -1.37 16 27 C -0.08 -1.81 9.60 22.53 0.22 -1.59 16 28 C -0.23 -12.58 8.39 22.86 0.19 -12.39 16 29 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 30 H 0.11 5.96 6.18 -2.91 -0.02 5.94 16 31 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 32 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 33 H 0.42 9.99 6.87 -92.71 -0.64 9.35 16 34 H 0.15 1.76 6.42 -2.91 -0.02 1.74 16 35 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 37 H 0.07 0.99 8.08 -2.39 -0.02 0.98 16 38 H 0.41 2.45 8.48 -92.71 -0.79 1.66 16 39 H 0.41 0.22 8.84 -92.71 -0.82 -0.60 16 40 H 0.42 2.27 8.93 -92.70 -0.83 1.45 16 41 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.12 3.25 7.65 -2.91 -0.02 3.23 16 43 H 0.08 4.83 6.44 -2.92 -0.02 4.81 16 Total: -1.00 -83.07 371.95 -0.76 -83.83 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -1.95 Total: 29.58 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 4.99 Total: -25.59 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -5.70 Total: -86.67 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.12 Total: -43.63 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -83.07 -0.76 -83.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417869270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.789 kcal (2) G-P(sol) polarization free energy of solvation -83.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds