Wall clock time and date at job start Tue Mar 31 2020 22:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86802 * 119.99762 * 2 1 4 4 H 1.48499 * 109.47161 * 239.99731 * 3 2 1 5 5 H 1.48492 * 109.47420 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46882 * 120.00284 * 3 2 1 7 7 C 1.39935 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99850 * 162.61159 * 7 2 1 9 9 C 1.41430 * 120.00291 * 342.61051 * 7 2 1 10 10 C 1.40785 * 120.18236 * 154.90743 * 9 7 2 11 11 C 1.37711 * 120.04267 * 180.02562 * 10 9 7 12 12 C 1.38377 * 120.41137 * 359.70557 * 11 10 9 13 13 C 1.39885 * 120.35404 * 0.55027 * 12 11 10 14 14 C 1.47882 * 120.02127 * 179.74722 * 13 12 11 15 15 O 1.21549 * 120.00288 * 179.72776 * 14 13 12 16 16 N 1.34779 * 120.00111 * 359.72047 * 14 13 12 17 17 C 1.46505 * 120.00023 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47138 * 180.02562 * 17 16 14 19 19 C 1.38232 * 120.41622 * 94.99948 * 18 17 16 20 20 C 1.39376 * 118.35385 * 180.02562 * 19 18 17 21 21 O 1.35519 * 120.51440 * 180.02562 * 20 19 18 22 22 N 1.32825 * 118.97451 * 0.27377 * 20 19 18 23 23 C 1.31769 * 120.71615 * 359.44008 * 22 20 19 24 24 C 1.50707 * 119.09079 * 180.29030 * 23 22 20 25 25 C 1.53007 * 117.49761 * 9.02702 * 24 23 22 26 26 C 1.52991 * 117.49865 * 300.36825 * 24 23 22 27 27 N 1.31781 * 121.81421 * 0.57526 * 23 22 20 28 28 C 1.39032 * 119.95243 * 359.47195 * 13 12 11 29 29 H 0.96998 * 120.00728 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.97970 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.79403 * 179.97438 * 11 10 9 32 32 H 1.07993 * 119.82034 * 180.27474 * 12 11 10 33 33 H 0.96997 * 120.00112 * 0.02562 * 16 14 13 34 34 H 1.09001 * 109.47304 * 60.00285 * 17 16 14 35 35 H 1.09006 * 109.46717 * 300.00292 * 17 16 14 36 36 H 1.08004 * 120.82084 * 359.97438 * 19 18 17 37 37 H 0.96695 * 114.00425 * 89.99682 * 21 20 19 38 38 H 1.08997 * 115.54670 * 154.69209 * 24 23 22 39 39 H 1.09003 * 117.49779 * 0.02562 * 25 24 23 40 40 H 1.09001 * 117.49699 * 145.01964 * 25 24 23 41 41 H 1.09006 * 117.49845 * 214.97549 * 26 24 23 42 42 H 1.09004 * 117.50089 * 359.97378 * 26 24 23 43 43 H 1.07994 * 120.20339 * 180.23331 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.0959 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0510 -1.2330 -0.2801 9 6 1.3493 -2.4089 0.3650 10 6 1.8189 -3.6484 -0.1096 11 6 1.1751 -4.8122 0.2477 12 6 0.0689 -4.7741 1.0781 13 6 -0.4153 -3.5515 1.5551 14 6 -1.6014 -3.5190 2.4377 15 8 -2.0189 -2.4569 2.8560 16 7 -2.2198 -4.6672 2.7781 17 6 -3.3952 -4.6349 3.6520 18 6 -3.8924 -6.0396 3.8773 19 6 -3.4951 -6.7520 4.9932 20 6 -3.9806 -8.0480 5.1586 21 8 -3.6200 -8.7856 6.2367 22 7 -4.7983 -8.5507 4.2405 23 6 -5.1565 -7.8350 3.1938 24 6 -6.0913 -8.4395 2.1779 25 6 -6.7420 -9.7798 2.5262 26 6 -5.6353 -9.7172 1.4706 27 7 -4.7154 -6.6072 3.0079 28 6 0.2229 -2.3674 1.2035 29 1 -0.4851 0.8400 0.0004 30 1 2.6845 -3.6866 -0.7543 31 1 1.5385 -5.7608 -0.1191 32 1 -0.4260 -5.6930 1.3558 33 1 -1.8866 -5.5149 2.4446 34 1 -4.1805 -4.0420 3.1831 35 1 -3.1245 -4.1878 4.6086 36 1 -2.8244 -6.3155 5.7186 37 1 -4.2075 -8.6831 6.9978 38 1 -6.6820 -7.7281 1.6008 39 1 -6.4943 -10.2240 3.4903 40 1 -7.7607 -9.9503 2.1778 41 1 -5.9263 -9.8466 0.4281 42 1 -4.6590 -10.1204 1.7396 43 1 -0.1452 -1.4216 1.5725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001419447868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:58 Heat of formation + Delta-G solvation = -4.021196 kcal Electronic energy + Delta-G solvation = -27418.763551 eV Core-core repulsion = 23428.988313 eV Total energy + Delta-G solvation = -3989.775238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.51880 -40.92034 -39.00120 -38.88039 -38.00442 -36.21226 -35.59033 -34.12844 -32.74717 -31.92441 -31.29665 -28.61067 -27.13958 -26.37461 -24.64763 -23.68739 -23.24309 -22.80957 -21.91558 -21.30439 -20.02872 -19.58219 -18.91602 -18.06309 -17.41772 -17.18866 -16.81588 -16.62142 -16.49624 -16.39597 -16.15126 -15.51651 -15.39189 -15.27907 -14.97740 -14.47492 -14.30079 -14.11800 -14.04108 -13.46735 -13.27780 -13.15703 -12.95670 -12.80302 -12.54280 -12.40457 -12.21355 -12.00648 -11.88451 -11.80255 -11.66414 -11.53035 -11.40648 -11.07019 -10.89800 -10.52013 -10.31737 -10.29551 -9.49819 -9.40475 -8.66440 -6.38645 -0.41663 -0.31036 0.34490 0.99896 1.37281 1.48388 1.51301 1.99513 2.05952 2.14614 2.19867 2.42930 2.59029 2.77933 3.00341 3.07565 3.65985 3.68480 3.78706 3.88143 3.94817 4.03626 4.07584 4.10748 4.37799 4.44555 4.52020 4.54110 4.55461 4.77949 4.88613 4.91962 5.06314 5.07771 5.15216 5.16153 5.23608 5.29650 5.31396 5.50212 5.77903 5.83327 5.90174 6.03653 6.26214 6.40928 6.45353 6.61115 6.87302 6.88984 6.93058 7.19180 8.30411 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.002231 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.916025 B =12545.560242 C =12813.413078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.085 0.915 9 C 0.068 3.932 10 C -0.215 4.215 11 C -0.096 4.096 12 C -0.200 4.200 13 C -0.137 4.137 14 C 0.568 3.432 15 O -0.579 6.579 16 N -0.709 5.709 17 C 0.174 3.826 18 C 0.174 3.826 19 C -0.223 4.223 20 C 0.369 3.631 21 O -0.476 6.476 22 N -0.544 5.544 23 C 0.367 3.633 24 C -0.125 4.125 25 C -0.137 4.137 26 C -0.150 4.150 27 N -0.527 5.527 28 C -0.128 4.128 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.409 0.591 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.179 0.821 37 H 0.432 0.568 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.632 -17.609 9.286 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.177 1.177 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.525 4.525 8 H 0.103 0.897 9 C 0.065 3.935 10 C -0.235 4.235 11 C -0.114 4.114 12 C -0.219 4.219 13 C -0.140 4.140 14 C 0.358 3.642 15 O -0.460 6.460 16 N -0.363 5.363 17 C 0.050 3.950 18 C 0.029 3.971 19 C -0.247 4.247 20 C 0.180 3.820 21 O -0.287 6.287 22 N -0.270 5.270 23 C 0.100 3.900 24 C -0.145 4.145 25 C -0.174 4.174 26 C -0.188 4.188 27 N -0.244 5.244 28 C -0.148 4.148 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.246 0.754 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.197 0.803 37 H 0.296 0.704 38 H 0.155 0.845 39 H 0.119 0.881 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.103 0.897 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.274 -17.281 8.684 22.907 hybrid contribution 0.671 1.158 0.740 1.530 sum -11.603 -16.123 9.424 21.987 Atomic orbital electron populations 1.69872 1.09230 1.30768 1.35136 1.26859 0.95426 1.04961 0.91306 0.85232 0.78696 0.75426 0.80282 1.17691 1.19654 1.18426 1.19839 0.98454 0.92081 1.42166 0.89712 1.17954 0.91805 0.93910 0.89806 1.21405 1.03885 0.92779 1.05455 1.20897 0.95394 0.97732 0.97335 1.20773 1.00755 0.94980 1.05430 1.19697 0.96886 0.95462 1.01930 1.18633 0.83028 0.83084 0.79425 1.90686 1.67279 1.31544 1.56468 1.45588 1.30222 1.09094 1.51373 1.20138 0.87968 0.90478 0.96423 1.21408 0.90818 0.95493 0.89361 1.23014 1.04934 0.94722 1.01990 1.19487 0.87845 0.86326 0.88319 1.84698 1.53907 1.67580 1.22562 1.67696 1.15346 1.39197 1.04719 1.22342 0.91998 0.85420 0.90229 1.20848 1.01427 0.92460 0.99735 1.23097 0.98680 0.95098 1.00568 1.23075 0.99867 0.96499 0.99351 1.68003 1.12793 1.13011 1.30549 1.21449 0.98156 0.96343 0.98899 0.90207 0.87257 0.84614 0.85496 0.75414 0.90247 0.87801 0.80345 0.70441 0.84500 0.88105 0.85763 0.85861 0.89715 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.88 10.97 21.82 0.24 -45.64 16 2 C 0.03 1.54 5.14 85.26 0.44 1.98 16 3 Si 0.98 39.41 29.59 68.60 2.03 41.44 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.50 -26.93 9.05 23.47 0.21 -26.72 16 8 H 0.08 4.32 7.90 -2.91 -0.02 4.30 16 9 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 10 C -0.22 -10.12 9.78 22.77 0.22 -9.89 16 11 C -0.10 -3.85 10.01 22.18 0.22 -3.63 16 12 C -0.20 -8.02 9.55 22.70 0.22 -7.80 16 13 C -0.14 -6.47 5.87 -20.13 -0.12 -6.59 16 14 C 0.57 24.69 7.77 86.80 0.67 25.37 16 15 O -0.58 -29.25 16.33 -3.87 -0.06 -29.31 16 16 N -0.71 -22.81 5.50 -469.66 -2.58 -25.39 16 17 C 0.17 4.63 6.02 85.63 0.52 5.15 16 18 C 0.17 4.03 6.19 42.46 0.26 4.29 16 19 C -0.22 -4.11 9.79 22.54 0.22 -3.89 16 20 C 0.37 6.91 7.83 84.82 0.66 7.57 16 21 O -0.48 -6.52 13.58 -88.22 -1.20 -7.72 16 22 N -0.54 -11.72 9.38 -300.68 -2.82 -14.54 16 23 C 0.37 8.36 7.31 138.76 1.01 9.38 16 24 C -0.12 -2.22 6.23 -11.54 -0.07 -2.29 16 25 C -0.14 -1.79 10.01 30.62 0.31 -1.49 16 26 C -0.15 -2.19 10.24 30.62 0.31 -1.87 16 27 N -0.53 -13.42 10.27 -176.22 -1.81 -15.23 16 28 C -0.13 -7.09 8.23 23.01 0.19 -6.90 16 29 H 0.29 14.75 8.30 -92.71 -0.77 13.98 16 30 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 31 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 32 H 0.13 4.05 6.38 -2.91 -0.02 4.03 16 33 H 0.41 11.70 6.48 -92.71 -0.60 11.09 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.10 2.48 8.06 -2.38 -0.02 2.46 16 36 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.43 1.13 9.06 -74.06 -0.67 0.46 16 38 H 0.14 2.26 8.14 -2.39 -0.02 2.25 16 39 H 0.10 1.51 7.54 -2.39 -0.02 1.49 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.10 6.24 5.77 -2.91 -0.02 6.23 16 Total: -1.00 -73.28 375.90 -1.22 -74.50 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.18 Total: 35.66 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 5.17 Total: -13.77 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -6.97 Total: -100.80 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -1.26 Total: -37.03 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -73.28 -1.22 -74.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419447868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.479 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds