Wall clock time and date at job start Tue Mar 31 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86809 * 120.00010 * 2 1 4 4 H 1.48499 * 109.46692 * 239.99992 * 3 2 1 5 5 H 1.48495 * 109.47327 * 119.99735 * 3 2 1 6 6 H 1.48503 * 109.46467 * 359.97438 * 3 2 1 7 7 C 1.38697 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00565 * 179.97438 * 7 2 1 9 9 O 1.34823 * 119.99518 * 0.02562 * 7 2 1 10 10 C 1.35518 * 116.99448 * 174.91155 * 9 7 2 11 11 C 1.38836 * 120.16557 * 5.20313 * 10 9 7 12 12 C 1.38023 * 120.07008 * 179.79077 * 11 10 9 13 13 C 1.38568 * 120.40583 * 0.46274 * 12 11 10 14 14 C 1.37832 * 120.32337 * 359.79570 * 13 12 11 15 15 C 1.39669 * 119.91409 * 359.97120 * 14 13 12 16 16 C 1.47540 * 120.19062 * 180.02562 * 15 14 13 17 17 O 1.21596 * 119.99686 * 134.86222 * 16 15 14 18 18 N 1.34767 * 120.00277 * 314.85651 * 16 15 14 19 19 C 1.47023 * 125.64841 * 354.86696 * 18 16 15 20 20 C 1.54321 * 107.27145 * 181.01720 * 19 18 16 21 21 C 1.55152 * 102.94427 * 22.19693 * 20 19 18 22 22 H 1.09003 * 111.00493 * 82.56813 * 21 20 19 23 23 C 1.50698 * 111.01032 * 206.42127 * 21 20 19 24 24 N 1.31793 * 119.11857 * 59.72044 * 23 21 20 25 25 C 1.32342 * 120.81587 * 179.76022 * 24 23 21 26 26 C 1.38595 * 119.10046 * 0.51561 * 25 24 23 27 27 C 1.38599 * 118.40426 * 359.74650 * 26 25 24 28 28 N 1.31794 * 119.12503 * 240.00156 * 23 21 20 29 29 C 1.47429 * 125.64936 * 174.55887 * 18 16 15 30 30 H 0.96997 * 119.99871 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.96227 * 0.02562 * 11 10 9 32 32 H 1.08007 * 119.79782 * 180.23351 * 12 11 10 33 33 H 1.07998 * 119.84259 * 179.76322 * 13 12 11 34 34 H 1.07996 * 120.04450 * 179.97438 * 14 13 12 35 35 H 1.09000 * 109.88434 * 300.44039 * 19 18 16 36 36 H 1.09002 * 109.87940 * 61.60642 * 19 18 16 37 37 H 1.09003 * 110.71718 * 140.55595 * 20 19 18 38 38 H 1.09000 * 110.72629 * 263.83203 * 20 19 18 39 39 H 1.08000 * 120.44718 * 180.23673 * 25 24 23 40 40 H 1.08003 * 120.79923 * 179.77203 * 26 25 24 41 41 H 1.08001 * 120.44694 * 179.97438 * 27 26 25 42 42 H 1.09003 * 110.36386 * 274.74641 * 29 18 16 43 43 H 1.08996 * 110.36942 * 37.07116 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 3.1029 1.6965 1.2125 6 1 1.2841 2.7464 -0.0006 7 6 2.0088 -1.2011 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3346 -2.3687 0.0005 10 6 2.0687 -3.5028 -0.1060 11 6 3.4556 -3.4393 -0.1003 12 6 4.2013 -4.5960 -0.2046 13 6 3.5746 -5.8260 -0.3252 14 6 2.1988 -5.9077 -0.3380 15 6 1.4310 -4.7462 -0.2285 16 6 -0.0422 -4.8266 -0.2409 17 8 -0.6924 -4.1931 0.5680 18 7 -0.6670 -5.6021 -1.1489 19 6 -0.0149 -6.3330 -2.2452 20 6 -1.1242 -7.0580 -3.0361 21 6 -2.3943 -6.2402 -2.6824 22 1 -2.4731 -5.3509 -3.3077 23 6 -3.6335 -7.0901 -2.7973 24 7 -3.7410 -8.1714 -2.0516 25 6 -4.8165 -8.9394 -2.1220 26 6 -5.8316 -8.5986 -3.0020 27 6 -5.6800 -7.4571 -3.7733 28 7 -4.5784 -6.7353 -3.6449 29 6 -2.1170 -5.8631 -1.2034 30 1 -0.4850 -0.8400 0.0004 31 1 3.9514 -2.4841 -0.0104 32 1 5.2800 -4.5419 -0.1960 33 1 4.1670 -6.7250 -0.4101 34 1 1.7150 -6.8686 -0.4326 35 1 0.5087 -5.6338 -2.8972 36 1 0.6872 -7.0613 -1.8392 37 1 -0.9245 -7.0163 -4.1069 38 1 -1.2247 -8.0905 -2.7014 39 1 -4.9000 -9.8221 -1.5054 40 1 -6.7197 -9.2077 -3.0844 41 1 -6.4503 -7.1611 -4.4700 42 1 -2.3787 -6.6900 -0.5432 43 1 -2.6743 -4.9672 -0.9299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001420057451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:41 Heat of formation + Delta-G solvation = 24.003545 kcal Electronic energy + Delta-G solvation = -28517.153330 eV Core-core repulsion = 24528.593336 eV Total energy + Delta-G solvation = -3988.559994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41370 -39.90762 -38.70515 -36.92449 -36.45063 -33.99765 -33.31047 -32.31545 -31.13777 -30.18807 -28.95833 -28.77786 -25.23003 -24.93487 -24.74079 -23.44938 -22.05377 -21.59318 -20.88157 -19.29170 -18.42975 -17.90905 -17.48567 -17.07096 -16.27054 -15.97345 -15.41144 -15.14929 -15.04999 -14.96384 -14.32746 -14.09880 -13.84653 -13.80659 -13.60637 -13.54145 -13.43531 -13.27985 -12.85676 -12.44831 -12.22633 -11.78066 -11.50698 -11.37133 -11.32961 -11.12893 -11.05597 -10.94768 -10.82870 -10.74082 -10.51152 -10.29179 -9.77192 -9.60418 -9.50692 -9.13072 -8.80734 -8.36888 -8.21296 -7.38806 -6.79126 -4.07768 0.55476 0.78934 1.73740 2.25783 3.18227 3.23385 3.28955 3.41095 3.45489 3.49038 3.68802 3.85789 4.09527 4.27236 4.48234 4.50020 4.58462 4.69250 4.76269 4.86400 4.96926 5.15968 5.20460 5.25821 5.27322 5.35712 5.46082 5.50136 5.65295 5.68455 5.78626 5.90372 5.98624 6.01815 6.04322 6.12221 6.16187 6.47719 6.54773 6.68600 6.71573 6.93674 7.04072 7.20409 7.46694 7.60461 7.81459 7.93459 8.37334 8.81536 8.89039 9.56464 10.64672 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.002964 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.991982 B = 9445.568034 C =10951.060450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.013 3.987 3 Si 1.096 2.904 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.478 4.478 8 H 0.087 0.913 9 O -0.169 6.169 10 C 0.192 3.808 11 C -0.232 4.232 12 C -0.054 4.054 13 C -0.224 4.224 14 C -0.041 4.041 15 C -0.218 4.218 16 C 0.591 3.409 17 O -0.521 6.521 18 N -0.622 5.622 19 C 0.105 3.895 20 C -0.116 4.116 21 C -0.041 4.041 22 H 0.113 0.887 23 C 0.337 3.663 24 N -0.511 5.511 25 C 0.151 3.849 26 C -0.237 4.237 27 C 0.150 3.850 28 N -0.514 5.514 29 C 0.125 3.875 30 H 0.289 0.711 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.169 0.831 40 H 0.147 0.853 41 H 0.169 0.831 42 H 0.076 0.924 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 -18.596 -8.669 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.194 4.194 3 Si 0.920 3.080 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.104 0.896 9 O -0.069 6.069 10 C 0.135 3.865 11 C -0.251 4.251 12 C -0.072 4.072 13 C -0.243 4.243 14 C -0.059 4.059 15 C -0.223 4.223 16 C 0.382 3.618 17 O -0.396 6.396 18 N -0.359 5.359 19 C -0.018 4.018 20 C -0.155 4.155 21 C -0.062 4.062 22 H 0.131 0.869 23 C 0.070 3.930 24 N -0.224 5.224 25 C -0.016 4.016 26 C -0.259 4.259 27 C -0.016 4.016 28 N -0.227 5.227 29 C 0.001 3.999 30 H 0.100 0.900 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.186 0.814 40 H 0.165 0.835 41 H 0.186 0.814 42 H 0.095 0.905 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.680 -15.850 -8.055 18.665 hybrid contribution -0.556 -2.431 -0.145 2.498 sum -6.236 -18.281 -8.199 20.984 Atomic orbital electron populations 1.70486 1.06653 1.32512 1.39909 1.26622 0.96808 1.01188 0.94829 0.83115 0.74515 0.73244 0.77134 1.20640 1.20599 1.19692 1.22335 0.93183 0.82202 1.57618 0.89590 1.83733 1.35314 1.12074 1.75829 1.19050 0.89947 0.86456 0.91082 1.21141 0.93164 0.99439 1.11370 1.20906 0.98722 0.92240 0.95338 1.20492 0.93957 0.97160 1.12698 1.20796 0.93655 0.95688 0.95808 1.18669 0.91513 0.92475 1.19635 1.17875 0.87409 0.77040 0.79446 1.90800 1.67256 1.42609 1.38970 1.48284 1.06988 1.49831 1.30817 1.22078 0.95358 0.95585 0.88770 1.22707 0.92380 0.99632 1.00753 1.21225 0.88759 0.97341 0.98826 0.86923 1.22774 0.93729 0.89642 0.86864 1.68204 1.24995 1.05721 1.23509 1.23277 0.87821 0.96954 0.93516 1.22922 1.02346 1.00465 1.00122 1.23276 0.93965 0.89579 0.94803 1.68279 1.02170 1.32370 1.19929 1.22095 0.82567 1.01607 0.93646 0.89992 0.84939 0.87046 0.87087 0.86484 0.91014 0.90818 0.89794 0.89675 0.81401 0.83495 0.81423 0.90548 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.87 13.70 55.48 0.76 -26.11 16 2 C 0.01 0.38 5.49 -17.52 -0.10 0.29 16 3 Si 1.10 23.98 29.92 -169.99 -5.09 18.89 16 4 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.48 -13.73 9.49 30.90 0.29 -13.44 16 8 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.98 8.09 -11.83 -0.10 -5.07 16 10 C 0.19 4.82 6.63 -38.60 -0.26 4.57 16 11 C -0.23 -5.06 9.16 -39.44 -0.36 -5.43 16 12 C -0.05 -0.95 10.03 -39.54 -0.40 -1.35 16 13 C -0.22 -3.70 10.02 -39.61 -0.40 -4.10 16 14 C -0.04 -0.72 8.43 -39.20 -0.33 -1.05 16 15 C -0.22 -4.83 5.39 -104.81 -0.56 -5.39 16 16 C 0.59 13.46 7.16 -12.47 -0.09 13.37 16 17 O -0.52 -14.22 16.60 -7.33 -0.12 -14.34 16 18 N -0.62 -11.07 3.32 -171.60 -0.57 -11.64 16 19 C 0.11 1.42 5.92 -3.06 -0.02 1.40 16 20 C -0.12 -1.27 6.39 -24.90 -0.16 -1.43 16 21 C -0.04 -0.52 3.44 -89.51 -0.31 -0.83 16 22 H 0.11 1.50 8.13 -51.93 -0.42 1.08 16 23 C 0.34 4.15 6.56 -157.20 -1.03 3.11 16 24 N -0.51 -5.79 9.23 -10.72 -0.10 -5.88 16 25 C 0.15 1.21 11.31 -17.20 -0.19 1.02 16 26 C -0.24 -1.56 10.17 -39.32 -0.40 -1.96 16 27 C 0.15 1.24 11.31 -17.20 -0.19 1.05 16 28 N -0.51 -6.07 10.33 -10.73 -0.11 -6.18 16 29 C 0.12 1.98 6.37 -2.41 -0.02 1.96 16 30 H 0.29 9.50 7.97 -40.82 -0.33 9.17 16 31 H 0.13 2.89 5.63 -52.49 -0.30 2.59 16 32 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.12 1.72 6.19 -52.49 -0.32 1.40 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.89 5.76 -51.93 -0.30 0.59 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.89 7.71 -51.93 -0.40 0.49 16 39 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 41 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.08 1.18 7.49 -51.93 -0.39 0.79 16 43 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -36.86 364.42 -9.25 -46.11 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.90 Total: 6.95 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -4.52 Total: -8.21 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.02 Total: -49.82 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.22 Total: -19.42 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.09 Total: 18.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.86 -9.25 -46.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420057451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.111 kcal (2) G-P(sol) polarization free energy of solvation -36.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds