Wall clock time and date at job start Tue Mar 31 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86809 * 120.00010 * 2 1 4 4 H 1.48499 * 109.46692 * 239.99992 * 3 2 1 5 5 H 1.48495 * 109.47327 * 119.99735 * 3 2 1 6 6 H 1.48503 * 109.46467 * 359.97438 * 3 2 1 7 7 C 1.38697 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00565 * 179.97438 * 7 2 1 9 9 O 1.34823 * 119.99518 * 0.02562 * 7 2 1 10 10 C 1.35518 * 116.99448 * 174.91155 * 9 7 2 11 11 C 1.38836 * 120.16557 * 5.20313 * 10 9 7 12 12 C 1.38023 * 120.07008 * 179.79077 * 11 10 9 13 13 C 1.38568 * 120.40583 * 0.46274 * 12 11 10 14 14 C 1.37832 * 120.32337 * 359.79570 * 13 12 11 15 15 C 1.39669 * 119.91409 * 359.97120 * 14 13 12 16 16 C 1.47540 * 120.19062 * 180.02562 * 15 14 13 17 17 O 1.21596 * 119.99686 * 134.86222 * 16 15 14 18 18 N 1.34767 * 120.00277 * 314.85651 * 16 15 14 19 19 C 1.47023 * 125.64841 * 354.86696 * 18 16 15 20 20 C 1.54321 * 107.27145 * 181.01720 * 19 18 16 21 21 C 1.55152 * 102.94427 * 22.19693 * 20 19 18 22 22 H 1.09003 * 111.00493 * 82.56813 * 21 20 19 23 23 C 1.50698 * 111.01032 * 206.42127 * 21 20 19 24 24 N 1.31793 * 119.11857 * 59.72044 * 23 21 20 25 25 C 1.32342 * 120.81587 * 179.76022 * 24 23 21 26 26 C 1.38595 * 119.10046 * 0.51561 * 25 24 23 27 27 C 1.38599 * 118.40426 * 359.74650 * 26 25 24 28 28 N 1.31794 * 119.12503 * 240.00156 * 23 21 20 29 29 C 1.47429 * 125.64936 * 174.55887 * 18 16 15 30 30 H 0.96997 * 119.99871 * 180.02562 * 1 2 3 31 31 H 1.07995 * 119.96227 * 0.02562 * 11 10 9 32 32 H 1.08007 * 119.79782 * 180.23351 * 12 11 10 33 33 H 1.07998 * 119.84259 * 179.76322 * 13 12 11 34 34 H 1.07996 * 120.04450 * 179.97438 * 14 13 12 35 35 H 1.09000 * 109.88434 * 300.44039 * 19 18 16 36 36 H 1.09002 * 109.87940 * 61.60642 * 19 18 16 37 37 H 1.09003 * 110.71718 * 140.55595 * 20 19 18 38 38 H 1.09000 * 110.72629 * 263.83203 * 20 19 18 39 39 H 1.08000 * 120.44718 * 180.23673 * 25 24 23 40 40 H 1.08003 * 120.79923 * 179.77203 * 26 25 24 41 41 H 1.08001 * 120.44694 * 179.97438 * 27 26 25 42 42 H 1.09003 * 110.36386 * 274.74641 * 29 18 16 43 43 H 1.08996 * 110.36942 * 37.07116 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 3.1029 1.6965 1.2125 6 1 1.2841 2.7464 -0.0006 7 6 2.0088 -1.2011 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3346 -2.3687 0.0005 10 6 2.0687 -3.5028 -0.1060 11 6 3.4556 -3.4393 -0.1003 12 6 4.2013 -4.5960 -0.2046 13 6 3.5746 -5.8260 -0.3252 14 6 2.1988 -5.9077 -0.3380 15 6 1.4310 -4.7462 -0.2285 16 6 -0.0422 -4.8266 -0.2409 17 8 -0.6924 -4.1931 0.5680 18 7 -0.6670 -5.6021 -1.1489 19 6 -0.0149 -6.3330 -2.2452 20 6 -1.1242 -7.0580 -3.0361 21 6 -2.3943 -6.2402 -2.6824 22 1 -2.4731 -5.3509 -3.3077 23 6 -3.6335 -7.0901 -2.7973 24 7 -3.7410 -8.1714 -2.0516 25 6 -4.8165 -8.9394 -2.1220 26 6 -5.8316 -8.5986 -3.0020 27 6 -5.6800 -7.4571 -3.7733 28 7 -4.5784 -6.7353 -3.6449 29 6 -2.1170 -5.8631 -1.2034 30 1 -0.4850 -0.8400 0.0004 31 1 3.9514 -2.4841 -0.0104 32 1 5.2800 -4.5419 -0.1960 33 1 4.1670 -6.7250 -0.4101 34 1 1.7150 -6.8686 -0.4326 35 1 0.5087 -5.6338 -2.8972 36 1 0.6872 -7.0613 -1.8392 37 1 -0.9245 -7.0163 -4.1069 38 1 -1.2247 -8.0905 -2.7014 39 1 -4.9000 -9.8221 -1.5054 40 1 -6.7197 -9.2077 -3.0844 41 1 -6.4503 -7.1611 -4.4700 42 1 -2.3787 -6.6900 -0.5432 43 1 -2.6743 -4.9672 -0.9299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001420057451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:41 Heat of formation + Delta-G solvation = -1.637667 kcal Electronic energy + Delta-G solvation = -28518.265216 eV Core-core repulsion = 24528.593336 eV Total energy + Delta-G solvation = -3989.671881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20166 -41.50280 -40.31860 -38.48240 -38.18461 -34.72521 -34.40742 -34.33940 -32.45519 -31.47045 -30.63640 -29.94076 -27.04901 -26.30623 -25.51043 -24.57528 -23.47211 -23.26475 -21.91204 -20.85256 -20.31593 -18.95933 -18.66043 -18.20376 -17.80213 -17.25286 -16.77020 -16.69134 -16.02342 -15.91255 -15.82164 -15.75291 -15.46599 -15.34111 -15.10148 -14.69514 -14.62069 -14.34240 -14.29159 -13.95817 -13.61409 -13.10732 -13.02475 -12.71930 -12.61195 -12.48009 -12.45056 -12.33807 -11.95913 -11.93026 -11.85834 -11.74795 -11.50840 -10.93510 -10.81270 -10.44685 -10.23984 -9.97308 -9.70539 -9.16250 -8.98992 -6.29265 -0.13568 0.11463 0.15017 0.62945 1.44994 1.59646 1.64963 1.76184 1.91939 2.33447 2.66662 2.78511 2.81197 3.09614 3.15297 3.22888 3.40596 3.53220 3.76180 3.80699 3.90292 3.99936 4.16697 4.18725 4.21204 4.22522 4.25106 4.45637 4.48164 4.53432 4.55234 4.69028 4.73797 4.81506 4.86313 4.91146 5.04900 5.10987 5.15759 5.28476 5.43014 5.44878 5.57987 5.62514 5.98005 6.04838 6.19103 6.37442 6.82192 7.08303 7.11210 7.59128 8.43846 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.002964 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.991982 B = 9445.568034 C =10951.060450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.047 4.047 3 Si 1.148 2.852 4 H -0.253 1.253 5 H -0.257 1.257 6 H -0.276 1.276 7 C -0.493 4.493 8 H 0.100 0.900 9 O -0.232 6.232 10 C 0.150 3.850 11 C -0.248 4.248 12 C -0.042 4.042 13 C -0.187 4.187 14 C -0.035 4.035 15 C -0.230 4.230 16 C 0.579 3.421 17 O -0.587 6.587 18 N -0.617 5.617 19 C 0.098 3.902 20 C -0.098 4.098 21 C -0.033 4.033 22 H 0.098 0.902 23 C 0.317 3.683 24 N -0.531 5.531 25 C 0.138 3.862 26 C -0.214 4.214 27 C 0.135 3.865 28 N -0.545 5.545 29 C 0.125 3.875 30 H 0.256 0.744 31 H 0.124 0.876 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.156 0.844 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.202 0.798 40 H 0.189 0.811 41 H 0.198 0.802 42 H 0.083 0.917 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 -23.218 -10.279 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.243 4.243 3 Si 0.963 3.037 4 H -0.177 1.177 5 H -0.182 1.182 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.117 0.883 9 O -0.137 6.137 10 C 0.097 3.903 11 C -0.267 4.267 12 C -0.060 4.060 13 C -0.205 4.205 14 C -0.053 4.053 15 C -0.234 4.234 16 C 0.370 3.630 17 O -0.468 6.468 18 N -0.350 5.350 19 C -0.024 4.024 20 C -0.136 4.136 21 C -0.054 4.054 22 H 0.116 0.884 23 C 0.049 3.951 24 N -0.245 5.245 25 C -0.027 4.027 26 C -0.235 4.235 27 C -0.030 4.030 28 N -0.260 5.260 29 C 0.001 3.999 30 H 0.064 0.936 31 H 0.142 0.858 32 H 0.176 0.824 33 H 0.186 0.814 34 H 0.173 0.827 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.218 0.782 40 H 0.206 0.794 41 H 0.214 0.786 42 H 0.101 0.899 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.411 -20.596 -9.722 23.029 hybrid contribution -1.191 -1.541 0.295 1.970 sum -4.602 -22.137 -9.427 24.497 Atomic orbital electron populations 1.70654 1.08111 1.29975 1.45738 1.28623 0.96751 1.05362 0.93585 0.82594 0.73734 0.68310 0.79089 1.17737 1.18155 1.20077 1.22752 0.93924 0.82881 1.57320 0.88265 1.83749 1.36790 1.13171 1.79965 1.19830 0.91738 0.86480 0.92265 1.21307 0.92017 1.01145 1.12275 1.21453 1.00888 0.91032 0.92659 1.21216 0.93531 0.98616 1.07167 1.21281 0.94423 0.95401 0.94196 1.19065 0.91583 0.93202 1.19556 1.18242 0.88089 0.77016 0.79632 1.90758 1.68533 1.45443 1.42044 1.48308 1.08122 1.48369 1.30240 1.22416 0.96589 0.95707 0.87640 1.22676 0.89851 0.99380 1.01729 1.21018 0.90953 0.97694 0.95705 0.88393 1.22405 0.93799 0.90483 0.88448 1.68152 1.26856 1.05905 1.23623 1.23945 0.87259 0.97385 0.94088 1.23352 1.02880 0.99495 0.97811 1.23899 0.93490 0.89954 0.95646 1.68211 1.03362 1.33740 1.20642 1.22127 0.81209 1.00051 0.96517 0.93584 0.85814 0.82422 0.81366 0.82650 0.91495 0.88147 0.87385 0.88246 0.78176 0.79370 0.78551 0.89895 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -61.98 13.70 21.62 0.30 -61.69 16 2 C -0.05 -2.86 5.49 84.85 0.47 -2.39 16 3 Si 1.15 50.32 29.92 68.60 2.05 52.37 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.49 -30.42 9.49 67.93 0.64 -29.77 16 8 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 9 O -0.23 -14.90 8.09 -8.07 -0.07 -14.97 16 10 C 0.15 7.87 6.63 22.91 0.15 8.02 16 11 C -0.25 -10.77 9.16 22.36 0.20 -10.56 16 12 C -0.04 -1.32 10.03 22.30 0.22 -1.09 16 13 C -0.19 -5.02 10.02 22.25 0.22 -4.80 16 14 C -0.03 -1.11 8.43 22.52 0.19 -0.92 16 15 C -0.23 -10.34 5.39 -19.98 -0.11 -10.45 16 16 C 0.58 28.10 7.16 86.70 0.62 28.72 16 17 O -0.59 -35.43 16.60 8.04 0.13 -35.29 16 18 N -0.62 -22.86 3.32 -815.08 -2.71 -25.57 16 19 C 0.10 2.51 5.92 86.73 0.51 3.02 16 20 C -0.10 -1.98 6.39 31.78 0.20 -1.78 16 21 C -0.03 -0.87 3.44 -10.07 -0.03 -0.90 16 22 H 0.10 2.83 8.13 -2.39 -0.02 2.81 16 23 C 0.32 7.75 6.56 138.75 0.91 8.66 16 24 N -0.53 -11.37 9.23 -187.84 -1.73 -13.10 16 25 C 0.14 1.86 11.31 84.70 0.96 2.82 16 26 C -0.21 -2.12 10.17 22.44 0.23 -1.89 16 27 C 0.13 1.97 11.31 84.70 0.96 2.93 16 28 N -0.55 -12.75 10.33 -187.85 -1.94 -14.69 16 29 C 0.12 4.25 6.37 86.93 0.55 4.81 16 30 H 0.26 18.85 7.97 -92.71 -0.74 18.11 16 31 H 0.12 5.48 5.63 -2.91 -0.02 5.46 16 32 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.16 3.74 6.19 -2.91 -0.02 3.72 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 2.03 5.76 -2.39 -0.01 2.02 16 37 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 1.79 7.71 -2.39 -0.02 1.77 16 39 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 41 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.08 2.71 7.49 -2.39 -0.02 2.69 16 43 H 0.04 1.72 7.99 -2.39 -0.02 1.70 16 Total: -1.00 -95.97 364.42 4.03 -91.94 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 1.09 Total: 26.57 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 6.91 Total: -5.58 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -6.09 Total: -115.05 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: 0.07 Total: -50.26 kcal Atomic # 14 Polarization: 50.32 SS G_CDS: 2.05 Total: 52.37 kcal Total: -95.97 4.03 -91.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420057451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.306 kcal (2) G-P(sol) polarization free energy of solvation -95.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds