Wall clock time and date at job start Tue Mar 31 2020 22:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86812 * 119.99777 * 2 1 4 4 H 1.48499 * 109.47093 * 269.99744 * 3 2 1 5 5 H 1.48497 * 109.46882 * 29.99701 * 3 2 1 6 6 H 1.48502 * 109.46981 * 149.99721 * 3 2 1 7 7 C 1.38698 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00390 * 179.97438 * 7 2 1 9 9 O 1.34816 * 119.99390 * 0.02562 * 7 2 1 10 10 C 1.35520 * 116.99527 * 174.24609 * 9 7 2 11 11 C 1.38838 * 120.16416 * 353.32655 * 10 9 7 12 12 C 1.38021 * 120.07286 * 179.72250 * 11 10 9 13 13 C 1.38575 * 120.40290 * 0.02894 * 12 11 10 14 14 C 1.37828 * 120.32419 * 359.95344 * 13 12 11 15 15 C 1.39670 * 119.91650 * 0.04289 * 14 13 12 16 16 C 1.47537 * 120.19504 * 180.02562 * 15 14 13 17 17 O 1.21591 * 119.99949 * 222.85413 * 16 15 14 18 18 N 1.34779 * 119.99928 * 42.85157 * 16 15 14 19 19 C 1.47015 * 125.64907 * 5.11896 * 18 16 15 20 20 C 1.54334 * 107.26684 * 178.85228 * 19 18 16 21 21 C 1.55164 * 103.01777 * 338.13832 * 20 19 18 22 22 H 1.08995 * 111.00188 * 277.23367 * 21 20 19 23 23 C 1.50706 * 111.03332 * 153.39710 * 21 20 19 24 24 N 1.31785 * 119.12410 * 306.05633 * 23 21 20 25 25 C 1.32334 * 120.81852 * 179.75923 * 24 23 21 26 26 C 1.38597 * 119.10089 * 0.51429 * 25 24 23 27 27 C 1.38592 * 118.40029 * 359.74343 * 26 25 24 28 28 N 1.31791 * 119.11630 * 126.33597 * 23 21 20 29 29 C 1.47421 * 125.64451 * 185.42750 * 18 16 15 30 30 H 0.96994 * 119.99975 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.95957 * 359.70774 * 11 10 9 32 32 H 1.08002 * 119.79933 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.83861 * 179.97438 * 13 12 11 34 34 H 1.08002 * 120.04303 * 180.02562 * 14 13 12 35 35 H 1.09000 * 109.88535 * 298.39195 * 19 18 16 36 36 H 1.08998 * 109.88650 * 59.55868 * 19 18 16 37 37 H 1.09002 * 110.84852 * 219.67250 * 20 19 18 38 38 H 1.08996 * 110.67382 * 96.52099 * 20 19 18 39 39 H 1.08004 * 120.44885 * 180.27733 * 25 24 23 40 40 H 1.08005 * 120.79518 * 179.72584 * 26 25 24 41 41 H 1.08000 * 120.44847 * 180.02562 * 27 26 25 42 42 H 1.08995 * 110.37306 * 322.92979 * 29 18 16 43 43 H 1.09003 * 110.37013 * 85.25680 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0088 -1.2011 0.0005 8 1 3.0888 -1.2011 0.0001 9 8 1.3347 -2.3686 0.0005 10 6 2.0676 -3.5021 -0.1200 11 6 3.4304 -3.4279 -0.3749 12 6 4.1761 -4.5834 -0.4916 13 6 3.5732 -5.8238 -0.3565 14 6 2.2216 -5.9167 -0.1030 15 6 1.4542 -4.7560 0.0178 16 6 0.0070 -4.8483 0.2896 17 8 -0.7708 -4.1296 -0.3078 18 7 -0.4528 -5.7292 1.2002 19 6 0.3779 -6.5784 2.0663 20 6 -0.5788 -7.3965 2.9592 21 6 -1.8830 -6.5562 2.9359 22 1 -1.8384 -5.7454 3.6629 23 6 -3.0909 -7.4255 3.1739 24 7 -3.2802 -8.4833 2.4110 25 6 -4.3268 -9.2724 2.5936 26 6 -5.2344 -8.9671 3.5956 27 6 -5.0042 -7.8436 4.3737 28 7 -3.9326 -7.1044 4.1358 29 6 -1.8720 -6.0052 1.4881 30 1 -0.4850 0.8400 -0.0004 31 1 3.9074 -2.4649 -0.4821 32 1 5.2360 -4.5206 -0.6894 33 1 4.1654 -6.7222 -0.4499 34 1 1.7565 -6.8858 0.0019 35 1 0.9837 -7.2491 1.4570 36 1 1.0215 -5.9564 2.6883 37 1 -0.1894 -7.4760 3.9742 38 1 -0.7498 -8.3858 2.5348 39 1 -4.4737 -10.1403 1.9678 40 1 -6.1004 -9.5897 3.7657 41 1 -5.6898 -7.5751 5.1638 42 1 -2.4570 -5.0876 1.4271 43 1 -2.2615 -6.7512 0.7954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001420057454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:46 Heat of formation + Delta-G solvation = 31.688124 kcal Electronic energy + Delta-G solvation = -28442.396494 eV Core-core repulsion = 24454.169728 eV Total energy + Delta-G solvation = -3988.226766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37705 -39.80590 -38.59153 -36.79789 -36.31304 -33.96366 -33.25040 -32.32802 -31.06669 -30.10882 -28.92634 -28.72672 -25.45752 -25.01992 -24.73357 -23.40266 -21.99569 -21.51720 -20.80157 -19.20999 -18.04492 -17.87039 -17.43502 -17.02503 -16.25743 -15.93351 -15.30603 -15.07434 -14.99432 -14.68097 -14.53665 -14.02060 -13.93761 -13.75113 -13.47191 -13.37588 -13.31990 -13.16242 -12.55518 -12.32477 -12.12809 -11.72961 -11.62543 -11.45368 -11.32175 -11.09565 -11.07311 -11.02970 -10.88218 -10.85192 -10.59836 -10.40963 -9.73843 -9.60294 -9.47090 -8.98439 -8.86206 -8.27400 -8.11926 -7.29998 -6.43522 -4.04219 0.58881 0.82255 1.81735 2.33385 3.13007 3.14159 3.18825 3.26576 3.45254 3.62192 3.74949 3.89457 3.94915 4.30233 4.54735 4.56591 4.64499 4.73496 4.79366 4.91457 5.08719 5.13777 5.26557 5.33068 5.33788 5.43374 5.52700 5.55323 5.72093 5.76008 5.85939 5.97657 6.05470 6.08834 6.09484 6.19232 6.22076 6.58124 6.63044 6.73447 6.80251 6.98785 7.08598 7.27633 7.30767 7.71240 7.85184 7.93896 8.06339 8.95616 8.98959 9.67513 10.71507 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.002923 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.656965 B = 9576.634050 C =11090.054430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.401 4.401 8 H 0.094 0.906 9 O -0.143 6.143 10 C 0.189 3.811 11 C -0.235 4.235 12 C -0.054 4.054 13 C -0.226 4.226 14 C -0.042 4.042 15 C -0.216 4.216 16 C 0.588 3.412 17 O -0.510 6.510 18 N -0.624 5.624 19 C 0.105 3.895 20 C -0.117 4.117 21 C -0.041 4.041 22 H 0.112 0.888 23 C 0.338 3.662 24 N -0.510 5.510 25 C 0.150 3.850 26 C -0.237 4.237 27 C 0.149 3.851 28 N -0.514 5.514 29 C 0.126 3.874 30 H 0.272 0.728 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.169 0.831 40 H 0.147 0.853 41 H 0.168 0.832 42 H 0.080 0.920 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 -18.854 8.402 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.477 4.477 8 H 0.111 0.889 9 O -0.043 6.043 10 C 0.131 3.869 11 C -0.254 4.254 12 C -0.073 4.073 13 C -0.245 4.245 14 C -0.061 4.061 15 C -0.220 4.220 16 C 0.379 3.621 17 O -0.384 6.384 18 N -0.361 5.361 19 C -0.018 4.018 20 C -0.155 4.155 21 C -0.062 4.062 22 H 0.130 0.870 23 C 0.070 3.930 24 N -0.224 5.224 25 C -0.016 4.016 26 C -0.259 4.259 27 C -0.017 4.017 28 N -0.227 5.227 29 C 0.002 3.998 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.186 0.814 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.098 0.902 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.486 -17.538 7.869 19.739 hybrid contribution -0.374 0.122 0.200 0.441 sum -4.860 -17.416 8.070 19.801 Atomic orbital electron populations 1.70096 1.06000 1.27794 1.43378 1.25375 0.95808 0.98952 0.96214 0.85721 0.78961 0.79986 0.78806 1.19741 1.20164 1.19071 1.21424 0.91816 0.80874 1.53547 0.88868 1.84079 1.33930 1.11280 1.75025 1.19223 0.90039 0.87048 0.90605 1.21134 0.93902 0.99304 1.11084 1.20891 0.98523 0.92298 0.95547 1.20475 0.94638 0.96919 1.12459 1.20848 0.93465 0.95803 0.95953 1.18680 0.92593 0.92014 1.18734 1.17881 0.88302 0.77801 0.78142 1.90843 1.57933 1.40473 1.49182 1.48285 1.06106 1.41899 1.39854 1.22091 0.93842 0.93293 0.92598 1.22716 0.93071 0.99164 1.00597 1.21187 0.89291 0.96445 0.99247 0.86976 1.22791 0.93835 0.89949 0.86375 1.68195 1.21609 1.05421 1.27158 1.23272 0.88175 0.96601 0.93549 1.22916 1.02831 1.00771 0.99387 1.23271 0.92835 0.89397 0.96149 1.68289 1.04121 1.31471 1.18858 1.22005 0.84267 1.00786 0.92711 0.91837 0.85072 0.87183 0.87214 0.86452 0.90815 0.91100 0.89953 0.89524 0.81426 0.83532 0.81462 0.90158 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.64 13.67 55.48 0.76 -24.88 16 2 C 0.04 1.22 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.40 -11.43 9.43 30.90 0.29 -11.14 16 8 H 0.09 2.41 5.33 -52.49 -0.28 2.13 16 9 O -0.14 -4.28 8.63 -13.28 -0.11 -4.40 16 10 C 0.19 4.75 6.62 -38.60 -0.26 4.50 16 11 C -0.23 -5.09 9.11 -39.44 -0.36 -5.45 16 12 C -0.05 -0.96 10.03 -39.54 -0.40 -1.36 16 13 C -0.23 -3.74 10.02 -39.61 -0.40 -4.14 16 14 C -0.04 -0.75 8.44 -39.20 -0.33 -1.08 16 15 C -0.22 -4.81 5.44 -104.81 -0.57 -5.38 16 16 C 0.59 13.64 7.21 -12.47 -0.09 13.55 16 17 O -0.51 -14.36 16.50 -8.78 -0.14 -14.51 16 18 N -0.62 -11.28 3.32 -171.75 -0.57 -11.85 16 19 C 0.10 1.43 5.86 -3.06 -0.02 1.41 16 20 C -0.12 -1.30 6.39 -24.89 -0.16 -1.45 16 21 C -0.04 -0.53 3.43 -89.62 -0.31 -0.84 16 22 H 0.11 1.51 8.13 -51.93 -0.42 1.08 16 23 C 0.34 4.20 6.56 -157.20 -1.03 3.17 16 24 N -0.51 -5.82 9.23 -10.72 -0.10 -5.92 16 25 C 0.15 1.22 11.31 -17.20 -0.19 1.03 16 26 C -0.24 -1.59 10.17 -39.32 -0.40 -1.99 16 27 C 0.15 1.26 11.30 -17.20 -0.19 1.06 16 28 N -0.51 -6.16 10.33 -10.73 -0.11 -6.27 16 29 C 0.13 2.04 6.38 -2.53 -0.02 2.03 16 30 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 31 H 0.13 2.81 5.74 -52.49 -0.30 2.51 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.12 1.74 5.94 -52.49 -0.31 1.42 16 35 H 0.07 0.90 5.62 -51.93 -0.29 0.61 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.92 7.54 -51.93 -0.39 0.53 16 39 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.15 0.49 8.06 -52.48 -0.42 0.06 16 41 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.08 1.47 7.99 -51.93 -0.41 1.06 16 43 H 0.07 1.14 7.65 -51.93 -0.40 0.74 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -37.21 364.59 -9.24 -46.45 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.91 Total: 5.13 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -4.53 Total: -4.97 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.02 Total: -48.92 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.26 Total: -18.91 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.21 -9.24 -46.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420057454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.135 kcal (2) G-P(sol) polarization free energy of solvation -37.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds