Wall clock time and date at job start Tue Mar 31 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86812 * 119.99777 * 2 1 4 4 H 1.48499 * 109.47093 * 269.99744 * 3 2 1 5 5 H 1.48497 * 109.46882 * 29.99701 * 3 2 1 6 6 H 1.48502 * 109.46981 * 149.99721 * 3 2 1 7 7 C 1.38698 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00390 * 179.97438 * 7 2 1 9 9 O 1.34816 * 119.99390 * 0.02562 * 7 2 1 10 10 C 1.35520 * 116.99527 * 174.24609 * 9 7 2 11 11 C 1.38838 * 120.16416 * 353.32655 * 10 9 7 12 12 C 1.38021 * 120.07286 * 179.72250 * 11 10 9 13 13 C 1.38575 * 120.40290 * 0.02894 * 12 11 10 14 14 C 1.37828 * 120.32419 * 359.95344 * 13 12 11 15 15 C 1.39670 * 119.91650 * 0.04289 * 14 13 12 16 16 C 1.47537 * 120.19504 * 180.02562 * 15 14 13 17 17 O 1.21591 * 119.99949 * 222.85413 * 16 15 14 18 18 N 1.34779 * 119.99928 * 42.85157 * 16 15 14 19 19 C 1.47015 * 125.64907 * 5.11896 * 18 16 15 20 20 C 1.54334 * 107.26684 * 178.85228 * 19 18 16 21 21 C 1.55164 * 103.01777 * 338.13832 * 20 19 18 22 22 H 1.08995 * 111.00188 * 277.23367 * 21 20 19 23 23 C 1.50706 * 111.03332 * 153.39710 * 21 20 19 24 24 N 1.31785 * 119.12410 * 306.05633 * 23 21 20 25 25 C 1.32334 * 120.81852 * 179.75923 * 24 23 21 26 26 C 1.38597 * 119.10089 * 0.51429 * 25 24 23 27 27 C 1.38592 * 118.40029 * 359.74343 * 26 25 24 28 28 N 1.31791 * 119.11630 * 126.33597 * 23 21 20 29 29 C 1.47421 * 125.64451 * 185.42750 * 18 16 15 30 30 H 0.96994 * 119.99975 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.95957 * 359.70774 * 11 10 9 32 32 H 1.08002 * 119.79933 * 180.02562 * 12 11 10 33 33 H 1.08001 * 119.83861 * 179.97438 * 13 12 11 34 34 H 1.08002 * 120.04303 * 180.02562 * 14 13 12 35 35 H 1.09000 * 109.88535 * 298.39195 * 19 18 16 36 36 H 1.08998 * 109.88650 * 59.55868 * 19 18 16 37 37 H 1.09002 * 110.84852 * 219.67250 * 20 19 18 38 38 H 1.08996 * 110.67382 * 96.52099 * 20 19 18 39 39 H 1.08004 * 120.44885 * 180.27733 * 25 24 23 40 40 H 1.08005 * 120.79518 * 179.72584 * 26 25 24 41 41 H 1.08000 * 120.44847 * 180.02562 * 27 26 25 42 42 H 1.08995 * 110.37306 * 322.92979 * 29 18 16 43 43 H 1.09003 * 110.37013 * 85.25680 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0088 -1.2011 0.0005 8 1 3.0888 -1.2011 0.0001 9 8 1.3347 -2.3686 0.0005 10 6 2.0676 -3.5021 -0.1200 11 6 3.4304 -3.4279 -0.3749 12 6 4.1761 -4.5834 -0.4916 13 6 3.5732 -5.8238 -0.3565 14 6 2.2216 -5.9167 -0.1030 15 6 1.4542 -4.7560 0.0178 16 6 0.0070 -4.8483 0.2896 17 8 -0.7708 -4.1296 -0.3078 18 7 -0.4528 -5.7292 1.2002 19 6 0.3779 -6.5784 2.0663 20 6 -0.5788 -7.3965 2.9592 21 6 -1.8830 -6.5562 2.9359 22 1 -1.8384 -5.7454 3.6629 23 6 -3.0909 -7.4255 3.1739 24 7 -3.2802 -8.4833 2.4110 25 6 -4.3268 -9.2724 2.5936 26 6 -5.2344 -8.9671 3.5956 27 6 -5.0042 -7.8436 4.3737 28 7 -3.9326 -7.1044 4.1358 29 6 -1.8720 -6.0052 1.4881 30 1 -0.4850 0.8400 -0.0004 31 1 3.9074 -2.4649 -0.4821 32 1 5.2360 -4.5206 -0.6894 33 1 4.1654 -6.7222 -0.4499 34 1 1.7565 -6.8858 0.0019 35 1 0.9837 -7.2491 1.4570 36 1 1.0215 -5.9564 2.6883 37 1 -0.1894 -7.4760 3.9742 38 1 -0.7498 -8.3858 2.5348 39 1 -4.4737 -10.1403 1.9678 40 1 -6.1004 -9.5897 3.7657 41 1 -5.6898 -7.5751 5.1638 42 1 -2.4570 -5.0876 1.4271 43 1 -2.2615 -6.7512 0.7954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001420057454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:45 Heat of formation + Delta-G solvation = 5.705395 kcal Electronic energy + Delta-G solvation = -28443.523190 eV Core-core repulsion = 24454.169728 eV Total energy + Delta-G solvation = -3989.353461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.16865 -41.40272 -40.19640 -38.38110 -38.04613 -34.70084 -34.37739 -34.30463 -32.38904 -31.39917 -30.60159 -29.89962 -27.43051 -26.23335 -25.49734 -24.54436 -23.41855 -23.13847 -21.85261 -20.78232 -19.91608 -18.94527 -18.62574 -18.19670 -17.78184 -17.05549 -16.68161 -16.39626 -16.29947 -15.92406 -15.78491 -15.64737 -15.48201 -15.20899 -14.85533 -14.55589 -14.47555 -14.27532 -14.21948 -13.87583 -13.56862 -13.53080 -13.03200 -12.79247 -12.64449 -12.53207 -12.49118 -12.28053 -12.11707 -11.88183 -11.83142 -11.69724 -11.47826 -10.85105 -10.81145 -10.42326 -10.21224 -9.88683 -9.62549 -9.05434 -8.47467 -6.18863 -0.11248 0.17278 0.19788 0.71415 1.31379 1.43197 1.50938 1.76455 2.00997 2.14848 2.69577 2.81833 2.83954 3.16135 3.19436 3.40020 3.47637 3.58692 3.78297 3.88866 3.94772 4.06729 4.20891 4.24036 4.24867 4.27539 4.31683 4.51741 4.54468 4.56679 4.62499 4.75163 4.78482 4.88311 4.95866 4.96259 5.06932 5.14257 5.17520 5.35691 5.45438 5.52062 5.61103 5.69878 5.94698 6.07309 6.16842 6.47381 6.92938 7.11058 7.23554 7.76645 8.74393 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.002923 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.656965 B = 9576.634050 C =11090.054430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.025 4.025 3 Si 1.024 2.976 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.422 4.422 8 H 0.109 0.891 9 O -0.210 6.210 10 C 0.147 3.853 11 C -0.250 4.250 12 C -0.043 4.043 13 C -0.191 4.191 14 C -0.035 4.035 15 C -0.231 4.231 16 C 0.577 3.423 17 O -0.582 6.582 18 N -0.618 5.618 19 C 0.098 3.902 20 C -0.099 4.099 21 C -0.032 4.032 22 H 0.098 0.902 23 C 0.317 3.683 24 N -0.530 5.530 25 C 0.138 3.862 26 C -0.215 4.215 27 C 0.134 3.866 28 N -0.546 5.546 29 C 0.126 3.874 30 H 0.271 0.729 31 H 0.125 0.875 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.202 0.798 40 H 0.189 0.811 41 H 0.197 0.803 42 H 0.041 0.959 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 -23.354 9.375 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.223 4.223 3 Si 0.842 3.158 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.497 4.497 8 H 0.126 0.874 9 O -0.114 6.114 10 C 0.093 3.907 11 C -0.269 4.269 12 C -0.061 4.061 13 C -0.209 4.209 14 C -0.053 4.053 15 C -0.235 4.235 16 C 0.368 3.632 17 O -0.462 6.462 18 N -0.353 5.353 19 C -0.024 4.024 20 C -0.137 4.137 21 C -0.053 4.053 22 H 0.117 0.883 23 C 0.049 3.951 24 N -0.244 5.244 25 C -0.027 4.027 26 C -0.236 4.236 27 C -0.031 4.031 28 N -0.260 5.260 29 C 0.002 3.998 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.174 0.826 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.219 0.781 40 H 0.206 0.794 41 H 0.214 0.786 42 H 0.060 0.940 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.037 -22.162 8.890 23.965 hybrid contribution -1.091 1.003 -0.080 1.485 sum -3.128 -21.159 8.811 23.132 Atomic orbital electron populations 1.70296 1.08498 1.28704 1.47591 1.26797 0.96744 1.03255 0.95550 0.84537 0.77926 0.74004 0.79339 1.18706 1.19779 1.16844 1.21988 0.92674 0.81443 1.53620 0.87387 1.84069 1.35777 1.12590 1.78938 1.19969 0.91804 0.87019 0.91920 1.21291 0.92763 1.01014 1.11852 1.21432 1.00476 0.91150 0.93012 1.21180 0.94089 0.98421 1.07255 1.21304 0.94096 0.95517 0.94420 1.19054 0.92518 0.92854 1.19074 1.18279 0.88688 0.77782 0.78437 1.90795 1.59563 1.43501 1.52318 1.48301 1.07750 1.40742 1.38491 1.22435 0.94163 0.93147 0.92630 1.22683 0.90954 0.98596 1.01467 1.20978 0.91587 0.96789 0.95980 0.88347 1.22423 0.94095 0.90819 0.87773 1.68146 1.23377 1.05638 1.27235 1.23949 0.87475 0.96942 0.94307 1.23348 1.03094 0.99809 0.97333 1.23890 0.92249 0.89716 0.97208 1.68220 1.05451 1.32896 1.19461 1.22030 0.82909 0.99231 0.95623 0.91997 0.85752 0.82590 0.81596 0.82731 0.88197 0.91354 0.87412 0.88178 0.78135 0.79398 0.78622 0.94017 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.99 13.67 21.62 0.30 -60.69 16 2 C -0.03 -1.52 5.49 84.85 0.47 -1.05 16 3 Si 1.02 44.88 29.55 68.60 2.03 46.91 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 7 C -0.42 -25.84 9.43 67.93 0.64 -25.20 16 8 H 0.11 5.90 5.33 -2.91 -0.02 5.89 16 9 O -0.21 -13.65 8.63 -6.62 -0.06 -13.71 16 10 C 0.15 7.75 6.62 22.91 0.15 7.90 16 11 C -0.25 -10.81 9.11 22.36 0.20 -10.60 16 12 C -0.04 -1.34 10.03 22.30 0.22 -1.11 16 13 C -0.19 -5.21 10.02 22.25 0.22 -4.99 16 14 C -0.04 -1.14 8.44 22.52 0.19 -0.95 16 15 C -0.23 -10.53 5.44 -19.99 -0.11 -10.64 16 16 C 0.58 28.60 7.21 86.70 0.62 29.22 16 17 O -0.58 -36.23 16.50 9.45 0.16 -36.07 16 18 N -0.62 -23.35 3.32 -815.54 -2.71 -26.06 16 19 C 0.10 2.52 5.86 86.73 0.51 3.03 16 20 C -0.10 -2.01 6.39 31.79 0.20 -1.81 16 21 C -0.03 -0.87 3.43 -10.14 -0.03 -0.90 16 22 H 0.10 2.85 8.13 -2.39 -0.02 2.83 16 23 C 0.32 7.84 6.56 138.76 0.91 8.75 16 24 N -0.53 -11.39 9.23 -187.84 -1.73 -13.12 16 25 C 0.14 1.87 11.31 84.70 0.96 2.83 16 26 C -0.21 -2.17 10.17 22.44 0.23 -1.94 16 27 C 0.13 2.01 11.30 84.70 0.96 2.96 16 28 N -0.55 -12.98 10.33 -187.85 -1.94 -14.92 16 29 C 0.13 4.39 6.38 86.86 0.55 4.94 16 30 H 0.27 16.56 8.31 -92.71 -0.77 15.79 16 31 H 0.12 5.43 5.74 -2.91 -0.02 5.41 16 32 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 33 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 34 H 0.16 3.81 5.94 -2.91 -0.02 3.79 16 35 H 0.10 2.05 5.62 -2.39 -0.01 2.04 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.10 1.84 7.54 -2.39 -0.02 1.82 16 39 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.19 0.29 8.06 -2.91 -0.02 0.27 16 41 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.04 1.74 7.99 -2.39 -0.02 1.72 16 43 H 0.08 2.60 7.65 -2.39 -0.02 2.58 16 Total: -1.00 -96.57 364.59 3.99 -92.58 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 1.06 Total: 24.63 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 6.90 Total: 0.45 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -6.09 Total: -114.79 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: 0.10 Total: -49.78 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -96.57 3.99 -92.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420057454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.285 kcal (2) G-P(sol) polarization free energy of solvation -96.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds