Wall clock time and date at job start Tue Mar 31 2020 22:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00160 * 2 1 4 4 H 1.48507 * 109.46845 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47532 * 119.99388 * 3 2 1 6 6 H 1.48498 * 109.46706 * 239.99859 * 3 2 1 7 7 C 1.37880 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00193 * 192.94600 * 7 2 1 9 9 C 1.50698 * 119.99592 * 12.94494 * 7 2 1 10 10 O 1.42901 * 112.94628 * 53.39020 * 9 7 2 11 11 C 1.53942 * 113.74152 * 281.65304 * 9 7 2 12 12 N 1.47578 * 86.11937 * 222.05058 * 11 9 7 13 13 C 1.34776 * 134.49491 * 204.64537 * 12 11 9 14 14 O 1.21590 * 120.00309 * 179.97438 * 13 12 11 15 15 N 1.34783 * 120.00066 * 359.97438 * 13 12 11 16 16 C 1.39767 * 119.99958 * 184.72891 * 15 13 12 17 17 C 1.39002 * 119.94528 * 323.45672 * 16 15 13 18 18 C 1.37836 * 120.05292 * 179.76786 * 17 16 15 19 19 C 1.39446 * 119.94508 * 0.51698 * 18 17 16 20 20 C 1.48263 * 120.05398 * 179.72332 * 19 18 17 21 21 C 1.39380 * 119.73148 * 359.74031 * 20 19 18 22 22 C 1.38370 * 119.06542 * 179.79703 * 21 20 19 23 23 C 1.38815 * 118.51794 * 0.47255 * 22 21 20 24 24 C 1.38228 * 119.37357 * 359.74875 * 23 22 21 25 25 N 1.31776 * 120.89439 * 0.02562 * 24 23 22 26 26 C 1.39440 * 119.89421 * 359.73609 * 19 18 17 27 27 C 1.37838 * 119.94648 * 0.02562 * 26 19 18 28 28 C 1.47584 * 91.01354 * 24.63944 * 12 11 9 29 29 H 0.96996 * 119.99866 * 185.56547 * 1 2 3 30 30 H 0.96705 * 113.99598 * 303.64709 * 10 9 7 31 31 H 1.09003 * 113.77476 * 336.35051 * 11 9 7 32 32 H 1.09004 * 113.76867 * 107.74743 * 11 9 7 33 33 H 0.97000 * 119.99639 * 4.72351 * 15 13 12 34 34 H 1.07993 * 119.97591 * 0.02562 * 17 16 15 35 35 H 1.07998 * 120.03204 * 180.24936 * 18 17 16 36 36 H 1.08000 * 120.47036 * 0.02562 * 21 20 19 37 37 H 1.08001 * 120.74529 * 180.24578 * 22 21 20 38 38 H 1.07998 * 120.31591 * 179.72760 * 23 22 21 39 39 H 1.07995 * 119.54697 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.03096 * 180.02562 * 26 19 18 41 41 H 1.07999 * 119.97532 * 179.97438 * 27 26 19 42 42 H 1.08999 * 113.77116 * 221.05668 * 28 12 11 43 43 H 1.09001 * 113.87070 * 89.67696 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6966 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0640 -1.2058 0.2101 9 6 1.2798 -2.4827 -0.2913 10 8 0.5458 -2.4438 -1.5167 11 6 0.4706 -3.0225 0.9019 12 7 0.9886 -4.3514 0.5230 13 6 0.5640 -5.6176 0.7045 14 8 1.2162 -6.5462 0.2677 15 7 -0.5838 -5.8547 1.3701 16 6 -0.9739 -7.1684 1.6446 17 6 -0.7279 -8.1736 0.7165 18 6 -1.1074 -9.4708 0.9870 19 6 -1.7483 -9.7725 2.1881 20 6 -2.1630 -11.1659 2.4788 21 6 -1.9145 -12.1702 1.5449 22 6 -2.3036 -13.4666 1.8322 23 6 -2.9384 -13.7155 3.0414 24 6 -3.1576 -12.6708 3.9197 25 7 -2.7728 -11.4458 3.6235 26 6 -1.9987 -8.7615 3.1152 27 6 -1.6129 -7.4666 2.8424 28 6 2.1583 -3.7371 -0.1345 29 1 -0.4850 -0.8361 0.0815 30 1 -0.0969 -1.7230 -1.5676 31 1 0.8279 -2.6714 1.8700 32 1 -0.6082 -2.9212 0.7829 33 1 -1.1390 -5.1135 1.6587 34 1 -0.2352 -7.9387 -0.2153 35 1 -0.9124 -10.2521 0.2674 36 1 -1.4218 -11.9405 0.6117 37 1 -2.1208 -14.2664 1.1299 38 1 -3.2583 -14.7157 3.2934 39 1 -3.6508 -12.8613 4.8613 40 1 -2.4946 -8.9928 4.0464 41 1 -1.8071 -6.6832 3.5600 42 1 2.4272 -4.2063 -1.0809 43 1 3.0126 -3.5953 0.5276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425828771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:57 Heat of formation + Delta-G solvation = 29.101131 kcal Electronic energy + Delta-G solvation = -27499.158355 eV Core-core repulsion = 23510.819409 eV Total energy + Delta-G solvation = -3988.338946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70521 -40.24327 -39.02374 -37.65805 -34.75037 -34.38376 -32.84914 -32.44001 -32.14118 -30.92060 -29.34061 -27.77753 -25.62970 -25.03899 -24.19754 -23.81916 -22.32778 -21.58076 -20.55728 -19.20074 -18.32541 -17.95549 -17.46936 -16.93443 -16.48401 -16.18069 -15.46879 -15.39266 -14.79552 -14.65976 -14.39203 -14.30622 -14.21548 -13.99001 -13.91497 -13.57990 -13.27039 -12.90830 -12.78529 -12.61947 -12.37501 -12.19183 -11.81255 -11.67235 -11.30015 -11.20240 -10.98041 -10.64289 -10.52880 -10.25875 -10.15068 -9.86862 -9.71338 -9.40604 -9.36670 -8.95429 -8.88650 -8.53550 -8.10079 -7.72075 -6.74553 -4.54570 0.37850 0.98202 1.41744 1.63387 2.73205 3.27452 3.30626 3.32320 3.49363 3.58937 3.92820 3.99407 4.08432 4.28555 4.39746 4.54686 4.74446 4.76291 4.81405 4.87429 5.03393 5.21121 5.22063 5.31122 5.42316 5.45543 5.59206 5.61285 5.78572 5.86193 5.89521 6.01261 6.04107 6.11650 6.20163 6.28185 6.30798 6.42422 6.44440 6.51588 6.58762 6.69658 7.05889 7.38247 7.58182 7.71567 8.03161 8.33772 8.38925 8.76602 8.81488 9.15936 10.56983 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038567 B = 0.001882 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.826322 B =14870.432583 C =15244.005917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.037 3.963 3 Si 1.068 2.932 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.617 4.617 8 H 0.066 0.934 9 C 0.218 3.782 10 O -0.565 6.565 11 C 0.068 3.932 12 N -0.649 5.649 13 C 0.722 3.278 14 O -0.588 6.588 15 N -0.688 5.688 16 C 0.194 3.806 17 C -0.126 4.126 18 C -0.077 4.077 19 C -0.086 4.086 20 C 0.184 3.816 21 C -0.169 4.169 22 C -0.071 4.071 23 C -0.186 4.186 24 C 0.105 3.895 25 N -0.483 5.483 26 C -0.056 4.056 27 C -0.159 4.159 28 C 0.145 3.855 29 H 0.267 0.733 30 H 0.375 0.625 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.407 0.593 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.073 0.927 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 -20.036 6.140 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.169 4.169 3 Si 0.894 3.106 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.655 4.655 8 H 0.084 0.916 9 C 0.177 3.823 10 O -0.373 6.373 11 C -0.055 4.055 12 N -0.386 5.386 13 C 0.426 3.574 14 O -0.467 6.467 15 N -0.335 5.335 16 C 0.097 3.903 17 C -0.146 4.146 18 C -0.097 4.097 19 C -0.088 4.088 20 C 0.048 3.952 21 C -0.189 4.189 22 C -0.097 4.097 23 C -0.206 4.206 24 C -0.053 4.053 25 N -0.192 5.192 26 C -0.075 4.075 27 C -0.180 4.180 28 C 0.023 3.977 29 H 0.079 0.921 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.243 0.757 34 H 0.162 0.838 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.173 0.827 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.092 0.908 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.403 -19.045 6.217 21.032 hybrid contribution -0.316 -1.612 -0.049 1.643 sum -6.719 -20.657 6.168 22.581 Atomic orbital electron populations 1.70960 1.06973 1.30579 1.44859 1.25999 0.96216 1.03080 0.91611 0.83563 0.75144 0.74874 0.77001 1.20552 1.21085 1.20963 1.22221 0.97557 0.91765 1.53914 0.91557 1.20117 0.88229 0.92941 0.81061 1.86261 1.56988 1.55523 1.38504 1.24487 0.99568 0.78896 1.02508 1.49359 1.27843 1.02704 1.58659 1.15473 0.80523 0.82525 0.78858 1.90863 1.58192 1.41934 1.55717 1.42635 1.23840 1.06621 1.60361 1.17724 0.95630 0.84015 0.92925 1.21264 1.01231 0.91861 1.00244 1.21060 0.96560 0.96346 0.95720 1.18388 1.03622 0.90662 0.96137 1.19810 0.92919 0.93030 0.89436 1.22141 1.02252 0.93352 1.01110 1.21538 0.94975 0.96678 0.96511 1.22152 1.01838 1.00916 0.95662 1.22719 0.95817 0.87676 0.99079 1.67650 1.10683 1.22285 1.18611 1.20994 0.96784 0.90887 0.98821 1.20893 1.04225 0.97413 0.95494 1.23231 0.88836 0.89563 0.96094 0.92105 0.77543 0.89489 0.91894 0.75721 0.83754 0.85501 0.84433 0.84760 0.84888 0.82682 0.84578 0.85387 0.90844 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.92 12.81 55.43 0.71 -22.21 16 2 C 0.04 0.91 5.27 -17.82 -0.09 0.82 16 3 Si 1.07 22.22 29.92 -169.99 -5.09 17.14 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.62 -15.15 8.57 -34.44 -0.30 -15.44 16 8 H 0.07 1.62 7.85 -52.49 -0.41 1.20 16 9 C 0.22 4.95 1.08 -90.85 -0.10 4.85 16 10 O -0.57 -13.52 13.46 -35.23 -0.47 -13.99 16 11 C 0.07 1.37 6.92 -2.98 -0.02 1.35 16 12 N -0.65 -13.10 3.61 -184.07 -0.66 -13.76 16 13 C 0.72 14.35 8.59 -86.91 -0.75 13.60 16 14 O -0.59 -13.11 14.58 5.29 0.08 -13.03 16 15 N -0.69 -11.10 5.33 -14.20 -0.08 -11.17 16 16 C 0.19 2.94 6.27 -83.68 -0.52 2.41 16 17 C -0.13 -1.92 8.67 -39.45 -0.34 -2.26 16 18 C -0.08 -0.99 9.41 -39.28 -0.37 -1.36 16 19 C -0.09 -1.10 5.88 -104.88 -0.62 -1.71 16 20 C 0.18 2.16 6.73 -82.95 -0.56 1.60 16 21 C -0.17 -1.61 9.46 -39.11 -0.37 -1.98 16 22 C -0.07 -0.54 10.16 -39.32 -0.40 -0.94 16 23 C -0.19 -1.34 10.11 -39.37 -0.40 -1.74 16 24 C 0.11 0.92 11.17 -17.58 -0.20 0.72 16 25 N -0.48 -5.61 9.43 -9.79 -0.09 -5.71 16 26 C -0.06 -0.70 9.56 -39.28 -0.38 -1.07 16 27 C -0.16 -2.05 9.95 -39.45 -0.39 -2.44 16 28 C 0.14 3.05 8.23 -2.97 -0.02 3.03 16 29 H 0.27 6.59 5.48 -40.82 -0.22 6.37 16 30 H 0.38 8.77 6.88 45.56 0.31 9.09 16 31 H 0.09 1.72 8.09 -51.93 -0.42 1.30 16 32 H 0.06 1.19 7.81 -51.93 -0.41 0.79 16 33 H 0.41 5.69 8.44 -40.82 -0.34 5.35 16 34 H 0.14 2.47 6.31 -52.49 -0.33 2.14 16 35 H 0.13 1.29 6.17 -52.49 -0.32 0.97 16 36 H 0.14 1.08 6.19 -52.49 -0.32 0.75 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.14 1.56 7.53 -52.49 -0.40 1.17 16 41 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -30.42 365.71 -10.11 -40.53 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -4.20 Total: 17.26 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -5.82 Total: -0.56 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.12 Total: -52.85 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.40 Total: -27.02 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.09 Total: 17.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.42 -10.11 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425828771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.634 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds