Wall clock time and date at job start Tue Mar 31 2020 22:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00160 * 2 1 4 4 H 1.48507 * 109.46845 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47532 * 119.99388 * 3 2 1 6 6 H 1.48498 * 109.46706 * 239.99859 * 3 2 1 7 7 C 1.37880 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00193 * 192.94600 * 7 2 1 9 9 C 1.50698 * 119.99592 * 12.94494 * 7 2 1 10 10 O 1.42901 * 112.94628 * 53.39020 * 9 7 2 11 11 C 1.53942 * 113.74152 * 281.65304 * 9 7 2 12 12 N 1.47578 * 86.11937 * 222.05058 * 11 9 7 13 13 C 1.34776 * 134.49491 * 204.64537 * 12 11 9 14 14 O 1.21590 * 120.00309 * 179.97438 * 13 12 11 15 15 N 1.34783 * 120.00066 * 359.97438 * 13 12 11 16 16 C 1.39767 * 119.99958 * 184.72891 * 15 13 12 17 17 C 1.39002 * 119.94528 * 323.45672 * 16 15 13 18 18 C 1.37836 * 120.05292 * 179.76786 * 17 16 15 19 19 C 1.39446 * 119.94508 * 0.51698 * 18 17 16 20 20 C 1.48263 * 120.05398 * 179.72332 * 19 18 17 21 21 C 1.39380 * 119.73148 * 359.74031 * 20 19 18 22 22 C 1.38370 * 119.06542 * 179.79703 * 21 20 19 23 23 C 1.38815 * 118.51794 * 0.47255 * 22 21 20 24 24 C 1.38228 * 119.37357 * 359.74875 * 23 22 21 25 25 N 1.31776 * 120.89439 * 0.02562 * 24 23 22 26 26 C 1.39440 * 119.89421 * 359.73609 * 19 18 17 27 27 C 1.37838 * 119.94648 * 0.02562 * 26 19 18 28 28 C 1.47584 * 91.01354 * 24.63944 * 12 11 9 29 29 H 0.96996 * 119.99866 * 185.56547 * 1 2 3 30 30 H 0.96705 * 113.99598 * 303.64709 * 10 9 7 31 31 H 1.09003 * 113.77476 * 336.35051 * 11 9 7 32 32 H 1.09004 * 113.76867 * 107.74743 * 11 9 7 33 33 H 0.97000 * 119.99639 * 4.72351 * 15 13 12 34 34 H 1.07993 * 119.97591 * 0.02562 * 17 16 15 35 35 H 1.07998 * 120.03204 * 180.24936 * 18 17 16 36 36 H 1.08000 * 120.47036 * 0.02562 * 21 20 19 37 37 H 1.08001 * 120.74529 * 180.24578 * 22 21 20 38 38 H 1.07998 * 120.31591 * 179.72760 * 23 22 21 39 39 H 1.07995 * 119.54697 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.03096 * 180.02562 * 26 19 18 41 41 H 1.07999 * 119.97532 * 179.97438 * 27 26 19 42 42 H 1.08999 * 113.77116 * 221.05668 * 28 12 11 43 43 H 1.09001 * 113.87070 * 89.67696 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6966 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0640 -1.2058 0.2101 9 6 1.2798 -2.4827 -0.2913 10 8 0.5458 -2.4438 -1.5167 11 6 0.4706 -3.0225 0.9019 12 7 0.9886 -4.3514 0.5230 13 6 0.5640 -5.6176 0.7045 14 8 1.2162 -6.5462 0.2677 15 7 -0.5838 -5.8547 1.3701 16 6 -0.9739 -7.1684 1.6446 17 6 -0.7279 -8.1736 0.7165 18 6 -1.1074 -9.4708 0.9870 19 6 -1.7483 -9.7725 2.1881 20 6 -2.1630 -11.1659 2.4788 21 6 -1.9145 -12.1702 1.5449 22 6 -2.3036 -13.4666 1.8322 23 6 -2.9384 -13.7155 3.0414 24 6 -3.1576 -12.6708 3.9197 25 7 -2.7728 -11.4458 3.6235 26 6 -1.9987 -8.7615 3.1152 27 6 -1.6129 -7.4666 2.8424 28 6 2.1583 -3.7371 -0.1345 29 1 -0.4850 -0.8361 0.0815 30 1 -0.0969 -1.7230 -1.5676 31 1 0.8279 -2.6714 1.8700 32 1 -0.6082 -2.9212 0.7829 33 1 -1.1390 -5.1135 1.6587 34 1 -0.2352 -7.9387 -0.2153 35 1 -0.9124 -10.2521 0.2674 36 1 -1.4218 -11.9405 0.6117 37 1 -2.1208 -14.2664 1.1299 38 1 -3.2583 -14.7157 3.2934 39 1 -3.6508 -12.8613 4.8613 40 1 -2.4946 -8.9928 4.0464 41 1 -1.8071 -6.6832 3.5600 42 1 2.4272 -4.2063 -1.0809 43 1 3.0126 -3.5953 0.5276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425828771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:56 Heat of formation + Delta-G solvation = 9.780152 kcal Electronic energy + Delta-G solvation = -27499.996176 eV Core-core repulsion = 23510.819409 eV Total energy + Delta-G solvation = -3989.176767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96927 -41.22988 -40.35736 -39.03587 -36.18654 -36.01832 -34.33046 -33.54085 -33.05399 -31.93968 -30.65889 -29.06165 -27.29800 -26.73419 -24.99593 -24.79938 -23.30626 -22.68196 -21.98809 -20.74160 -20.09037 -19.17148 -18.57913 -18.22841 -17.35789 -17.06620 -16.94470 -16.83183 -16.26777 -15.98213 -15.66459 -15.58450 -15.36985 -15.11967 -14.97425 -14.67871 -14.46804 -14.33513 -14.04376 -13.90903 -13.67715 -13.44985 -13.20977 -12.98483 -12.65074 -12.58179 -12.40351 -12.32268 -11.90356 -11.71309 -11.36432 -11.17489 -10.83857 -10.73050 -10.41943 -10.35583 -10.23613 -9.99299 -9.70382 -8.83636 -8.67207 -6.48420 -0.46742 0.34377 0.38430 0.71834 1.28155 1.62500 1.65846 1.87044 1.90997 2.54696 2.61841 2.65424 2.93336 3.10999 3.17148 3.44632 3.66302 3.87041 3.92164 3.98119 4.03933 4.14141 4.21144 4.25024 4.35659 4.37209 4.39581 4.52440 4.56035 4.58151 4.60614 4.68640 4.81161 4.95792 5.03202 5.07675 5.19957 5.28473 5.31539 5.43531 5.52671 5.72675 5.79297 5.94224 6.02933 6.09652 6.46203 6.79892 6.92280 7.01417 7.26795 7.30508 8.65761 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038567 B = 0.001882 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.826322 B =14870.432583 C =15244.005917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 1.110 2.890 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.278 1.278 7 C -0.630 4.630 8 H 0.063 0.937 9 C 0.200 3.800 10 O -0.576 6.576 11 C 0.086 3.914 12 N -0.650 5.650 13 C 0.719 3.281 14 O -0.617 6.617 15 N -0.675 5.675 16 C 0.163 3.837 17 C -0.141 4.141 18 C -0.078 4.078 19 C -0.081 4.081 20 C 0.150 3.850 21 C -0.175 4.175 22 C -0.074 4.074 23 C -0.173 4.173 24 C 0.090 3.910 25 N -0.508 5.508 26 C -0.062 4.062 27 C -0.148 4.148 28 C 0.145 3.855 29 H 0.264 0.736 30 H 0.374 0.626 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.417 0.583 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.180 0.820 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.064 0.936 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 -21.990 7.397 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.202 4.202 3 Si 0.933 3.067 4 H -0.211 1.211 5 H -0.195 1.195 6 H -0.204 1.204 7 C -0.668 4.668 8 H 0.081 0.919 9 C 0.159 3.841 10 O -0.384 6.384 11 C -0.037 4.037 12 N -0.387 5.387 13 C 0.423 3.577 14 O -0.498 6.498 15 N -0.322 5.322 16 C 0.068 3.932 17 C -0.162 4.162 18 C -0.097 4.097 19 C -0.082 4.082 20 C 0.015 3.985 21 C -0.195 4.195 22 C -0.099 4.099 23 C -0.193 4.193 24 C -0.068 4.068 25 N -0.218 5.218 26 C -0.081 4.081 27 C -0.168 4.168 28 C 0.022 3.978 29 H 0.076 0.924 30 H 0.224 0.776 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.254 0.746 34 H 0.138 0.862 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.197 0.803 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.083 0.917 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.189 -21.025 7.496 23.450 hybrid contribution -0.163 -1.260 -0.407 1.334 sum -7.352 -22.284 7.089 24.513 Atomic orbital electron populations 1.71021 1.07538 1.30599 1.46103 1.27065 0.96412 1.05766 0.91007 0.82993 0.74312 0.71711 0.77734 1.21056 1.19502 1.20379 1.22442 0.97605 0.92791 1.53958 0.91880 1.20314 0.89206 0.93080 0.81520 1.86248 1.57106 1.55492 1.39523 1.24242 0.99754 0.78318 1.01389 1.49263 1.27636 1.02979 1.58861 1.15605 0.81259 0.81870 0.78981 1.90840 1.59392 1.42606 1.56991 1.42412 1.22705 1.07592 1.59533 1.17924 0.97663 0.83434 0.94201 1.21181 1.02121 0.93219 0.99686 1.21209 0.96223 0.95846 0.96434 1.18657 1.02167 0.91767 0.95648 1.19796 0.95106 0.92866 0.90725 1.22361 1.02146 0.93898 1.01101 1.21965 0.94087 0.96596 0.97279 1.22580 0.99867 1.02043 0.94761 1.23251 0.95827 0.87231 1.00483 1.67576 1.11316 1.24063 1.18834 1.21186 0.96858 0.90736 0.99312 1.21061 1.02800 0.98181 0.94795 1.23212 0.89418 0.88927 0.96240 0.92407 0.77644 0.89020 0.90933 0.74574 0.86214 0.83351 0.83401 0.81735 0.81510 0.80272 0.83505 0.83263 0.91735 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.67 12.81 21.45 0.27 -46.40 16 2 C 0.00 -0.04 5.27 84.66 0.45 0.41 16 3 Si 1.11 44.28 29.92 68.60 2.05 46.33 16 4 H -0.29 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 6 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.63 -30.92 8.57 25.60 0.22 -30.70 16 8 H 0.06 3.07 7.85 -2.91 -0.02 3.04 16 9 C 0.20 9.14 1.08 -10.88 -0.01 9.13 16 10 O -0.58 -27.98 13.46 -148.98 -2.00 -29.99 16 11 C 0.09 3.42 6.92 86.48 0.60 4.01 16 12 N -0.65 -26.46 3.61 -858.37 -3.10 -29.55 16 13 C 0.72 29.04 8.59 179.05 1.54 30.58 16 14 O -0.62 -28.32 14.58 -4.00 -0.06 -28.38 16 15 N -0.68 -21.94 5.33 -317.10 -1.69 -23.63 16 16 C 0.16 5.00 6.27 38.24 0.24 5.24 16 17 C -0.14 -4.46 8.67 22.36 0.19 -4.27 16 18 C -0.08 -1.99 9.41 22.47 0.21 -1.78 16 19 C -0.08 -2.02 5.88 -20.03 -0.12 -2.13 16 20 C 0.15 3.37 6.73 41.96 0.28 3.65 16 21 C -0.18 -3.01 9.46 22.58 0.21 -2.80 16 22 C -0.07 -0.89 10.16 22.44 0.23 -0.66 16 23 C -0.17 -1.89 10.11 22.41 0.23 -1.66 16 24 C 0.09 1.34 11.17 84.70 0.95 2.29 16 25 N -0.51 -11.08 9.43 -184.89 -1.74 -12.83 16 26 C -0.06 -1.51 9.56 22.46 0.21 -1.29 16 27 C -0.15 -3.71 9.95 22.36 0.22 -3.49 16 28 C 0.14 6.16 8.23 86.48 0.71 6.87 16 29 H 0.26 13.12 5.48 -92.71 -0.51 12.61 16 30 H 0.37 17.85 6.88 -74.05 -0.51 17.34 16 31 H 0.09 3.57 8.09 -2.39 -0.02 3.55 16 32 H 0.07 2.73 7.81 -2.38 -0.02 2.71 16 33 H 0.42 11.54 8.44 -92.71 -0.78 10.76 16 34 H 0.12 4.35 6.31 -2.91 -0.02 4.33 16 35 H 0.15 2.97 6.17 -2.91 -0.02 2.95 16 36 H 0.15 2.07 6.19 -2.91 -0.02 2.05 16 37 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 39 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.15 3.23 7.53 -2.91 -0.02 3.21 16 41 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.10 4.01 8.09 -2.39 -0.02 3.99 16 Total: -1.00 -65.96 365.71 0.15 -65.81 By element: Atomic # 1 Polarization: 45.18 SS G_CDS: 0.05 Total: 45.23 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.36 Total: 13.40 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -6.25 Total: -112.41 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -2.06 Total: -58.37 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.05 Total: 46.33 kcal Total: -65.96 0.15 -65.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425828771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.590 kcal (2) G-P(sol) polarization free energy of solvation -65.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds