Wall clock time and date at job start Tue Mar 31 2020 23:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31692 * 119.63917 * 2 1 4 4 C 1.31858 * 121.95505 * 179.97438 * 3 2 1 5 5 C 1.38990 * 120.98449 * 359.97438 * 4 3 2 6 6 N 1.39979 * 120.42077 * 180.02562 * 5 4 3 7 7 C 1.34776 * 120.00264 * 145.26995 * 6 5 4 8 8 O 1.21296 * 119.99503 * 5.11440 * 7 6 5 9 9 C 1.50693 * 120.00203 * 185.11306 * 7 6 5 10 10 H 1.08998 * 109.46950 * 299.99618 * 9 7 6 11 11 C 1.50700 * 109.47364 * 60.00390 * 9 7 6 12 12 H 1.08000 * 119.99565 * 25.23762 * 11 9 7 13 13 C 1.37873 * 119.99878 * 205.24389 * 11 9 7 14 14 N 1.31514 * 120.00256 * 5.09902 * 13 11 9 15 15 Si 1.86803 * 120.00068 * 185.09925 * 13 11 9 16 16 H 1.48503 * 109.46899 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47253 * 119.99762 * 15 13 11 18 18 H 1.48495 * 109.47139 * 240.00333 * 15 13 11 19 19 C 1.50707 * 109.47198 * 179.97438 * 9 7 6 20 20 C 1.38235 * 120.00057 * 302.90653 * 19 9 7 21 21 C 1.38231 * 120.00130 * 179.78474 * 20 19 9 22 22 C 1.38242 * 119.99732 * 0.43810 * 21 20 19 23 23 C 1.38232 * 120.00105 * 359.81669 * 22 21 20 24 24 C 1.38235 * 119.99634 * 123.17058 * 19 9 7 25 25 C 1.38988 * 119.15511 * 0.27420 * 5 4 3 26 26 C 1.39544 * 119.63522 * 179.97438 * 2 1 3 27 27 C 1.47855 * 120.52829 * 0.04108 * 26 2 1 28 28 N 1.34770 * 120.00202 * 185.82838 * 27 26 2 29 29 O 1.21556 * 119.99476 * 5.83084 * 27 26 2 30 30 H 1.09003 * 109.47194 * 97.10820 * 1 2 3 31 31 H 1.08998 * 109.47386 * 217.11028 * 1 2 3 32 32 H 1.08997 * 109.47222 * 337.11031 * 1 2 3 33 33 H 1.08003 * 119.50389 * 179.97438 * 4 3 2 34 34 H 0.97006 * 120.00010 * 325.27518 * 6 5 4 35 35 H 0.97007 * 120.00333 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99827 * 359.97438 * 20 19 9 37 37 H 1.07992 * 120.00361 * 180.26868 * 21 20 19 38 38 H 1.08003 * 120.00179 * 179.83174 * 22 21 20 39 39 H 1.08001 * 120.00286 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.00433 * 359.97438 * 24 19 9 41 41 H 1.08006 * 120.88404 * 179.73297 * 25 5 4 42 42 H 0.97006 * 120.00252 * 0.02562 * 28 27 26 43 43 H 0.96996 * 120.00252 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1446 0.0000 4 6 3.4757 1.1979 0.0005 5 6 4.2388 0.0362 0.0016 6 7 5.6368 0.1065 0.0026 7 6 6.3576 -0.8174 0.6685 8 8 5.8010 -1.7612 1.1888 9 6 7.8548 -0.6778 0.7667 10 1 8.2862 -0.6787 -0.2343 11 6 8.1944 0.6170 1.4590 12 1 7.4861 1.0680 2.1383 13 6 9.4091 1.2259 1.2251 14 7 10.2295 0.7319 0.3238 15 14 9.8895 2.7526 2.1884 16 1 8.8001 3.1042 3.1343 17 1 11.1379 2.4866 2.9472 18 1 10.1119 3.8809 1.2490 19 6 8.4162 -1.8316 1.5572 20 6 7.9690 -2.0710 2.8431 21 6 8.4806 -3.1320 3.5665 22 6 9.4462 -3.9482 3.0073 23 6 9.8972 -3.7056 1.7233 24 6 9.3823 -2.6472 0.9982 25 6 3.5961 -1.1961 -0.0037 26 6 2.1970 -1.2129 0.0005 27 6 1.4614 -2.4955 0.0002 28 7 2.1332 -3.6577 0.1192 29 8 0.2506 -2.5015 -0.1075 30 1 -0.3634 -0.1272 -1.0198 31 1 -0.3634 -0.8195 0.6200 32 1 -0.3633 0.9467 0.3997 33 1 3.9692 2.1586 0.0001 34 1 6.0869 0.8203 -0.4758 35 1 11.0840 1.1605 0.1589 36 1 7.2175 -1.4310 3.2814 37 1 8.1281 -3.3217 4.5695 38 1 9.8479 -4.7755 3.5734 39 1 10.6512 -4.3434 1.2863 40 1 9.7345 -2.4578 -0.0049 41 1 4.1616 -2.1163 -0.0073 42 1 3.0994 -3.6528 0.2055 43 1 1.6506 -4.4991 0.1187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433541121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:14 Heat of formation + Delta-G solvation = -16.334386 kcal Electronic energy + Delta-G solvation = -28733.163025 eV Core-core repulsion = 24742.853847 eV Total energy + Delta-G solvation = -3990.309178 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95527 -39.62979 -38.70787 -37.86356 -34.88409 -34.08583 -33.82975 -32.12635 -31.48325 -30.99853 -30.02987 -27.97854 -26.68697 -24.77891 -24.10074 -22.49422 -21.74908 -21.37912 -20.59109 -19.64562 -18.19605 -17.48586 -16.97700 -16.31778 -16.22186 -16.20344 -15.75572 -15.45646 -15.18433 -14.64052 -14.37506 -14.30790 -13.98091 -13.79399 -13.57826 -13.25143 -13.06352 -12.59683 -12.47361 -12.40365 -12.30084 -11.96723 -11.79963 -11.74963 -11.17933 -11.15968 -10.56985 -10.46948 -10.42343 -10.26996 -10.13668 -9.80475 -9.67212 -9.64054 -9.47439 -8.91278 -8.80841 -8.04958 -8.02178 -7.75152 -6.42562 -4.50408 0.64696 1.24336 2.26932 2.28913 2.78733 3.10318 3.15923 3.21309 3.28594 3.36856 3.52640 3.87310 4.16252 4.40047 4.63926 4.71207 4.81182 4.90725 4.96312 5.17766 5.38905 5.63333 5.66850 5.74544 5.78429 5.81466 5.85665 5.92845 6.08147 6.13261 6.19544 6.38699 6.46050 6.46712 6.68987 6.70220 6.84182 6.91757 7.01364 7.20490 7.28030 7.32333 7.47829 7.61690 7.77287 7.78726 7.93013 7.95723 8.13771 8.51342 8.72960 9.17076 10.65292 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011432 B = 0.003741 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.715173 B = 7483.511507 C = 9354.960722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.158 3.842 3 N -0.471 5.471 4 C 0.103 3.897 5 C 0.101 3.899 6 N -0.665 5.665 7 C 0.531 3.469 8 O -0.546 6.546 9 C 0.057 3.943 10 H 0.089 0.911 11 C -0.523 4.523 12 H 0.065 0.935 13 C 0.078 3.922 14 N -0.873 5.873 15 Si 0.898 3.102 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.017 4.017 20 C -0.084 4.084 21 C -0.136 4.136 22 C -0.146 4.146 23 C -0.134 4.134 24 C -0.110 4.110 25 C -0.050 4.050 26 C -0.182 4.182 27 C 0.573 3.427 28 N -0.848 5.848 29 O -0.538 6.538 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.165 0.835 34 H 0.421 0.579 35 H 0.268 0.732 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.155 0.845 42 H 0.406 0.594 43 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.041 -4.432 -2.101 9.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.019 3.981 3 N -0.180 5.180 4 C -0.058 4.058 5 C 0.003 3.997 6 N -0.310 5.310 7 C 0.323 3.677 8 O -0.423 6.423 9 C 0.037 3.963 10 H 0.107 0.893 11 C -0.560 4.560 12 H 0.083 0.917 13 C -0.128 4.128 14 N -0.508 5.508 15 Si 0.725 3.275 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.018 4.018 20 C -0.102 4.102 21 C -0.154 4.154 22 C -0.165 4.165 23 C -0.152 4.152 24 C -0.128 4.128 25 C -0.078 4.078 26 C -0.187 4.187 27 C 0.360 3.640 28 N -0.412 5.412 29 O -0.417 6.417 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.182 0.818 34 H 0.259 0.741 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.172 0.828 42 H 0.236 0.764 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.385 -4.120 -1.877 10.420 hybrid contribution 1.819 0.113 0.461 1.880 sum -7.566 -4.007 -1.416 8.678 Atomic orbital electron populations 1.20944 0.87792 1.03449 1.03769 1.21366 0.97395 0.86613 0.92742 1.67601 1.08804 1.28351 1.13226 1.22918 0.89215 0.97699 0.95950 1.18815 0.85558 0.94296 1.01025 1.43656 1.02360 1.32342 1.52675 1.22010 0.91795 0.79556 0.74345 1.90560 1.73341 1.31719 1.46716 1.18088 0.84573 0.94080 0.99607 0.89283 1.20685 1.02901 1.04274 1.28136 0.91711 1.24928 0.96086 0.97433 0.94334 1.69885 1.09814 1.40289 1.30814 0.86428 0.78952 0.82052 0.80096 1.19435 1.20627 1.20646 1.19943 0.94682 0.92859 0.94328 1.20805 0.98759 0.96364 0.94259 1.20942 0.98449 0.96764 0.99247 1.20821 0.99389 1.00281 0.95966 1.20926 1.00575 0.98592 0.95093 1.20974 0.97410 0.94446 0.99957 1.21936 0.92616 0.98985 0.94307 1.20585 0.93716 0.94753 1.09689 1.17992 0.86730 0.83967 0.75357 1.43786 1.12351 1.08298 1.76759 1.90752 1.13523 1.87291 1.50116 0.90364 0.88431 0.91498 0.81813 0.74133 0.92200 0.87261 0.87624 0.87712 0.87528 0.86691 0.82774 0.76377 0.76498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 8.85 36.00 0.32 -0.99 16 2 C 0.16 2.32 6.82 -82.17 -0.56 1.76 16 3 N -0.47 -7.00 10.25 -9.00 -0.09 -7.10 16 4 C 0.10 1.44 11.11 -17.26 -0.19 1.25 16 5 C 0.10 1.53 6.32 -83.58 -0.53 1.00 16 6 N -0.67 -10.57 5.23 -9.79 -0.05 -10.62 16 7 C 0.53 10.08 6.82 -10.99 -0.07 10.00 16 8 O -0.55 -10.92 12.35 5.54 0.07 -10.85 16 9 C 0.06 1.21 2.29 -94.07 -0.22 1.00 16 10 H 0.09 1.97 7.27 -51.93 -0.38 1.59 16 11 C -0.52 -11.93 7.85 -34.44 -0.27 -12.20 16 12 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 13 C 0.08 1.84 5.45 -17.82 -0.10 1.74 16 14 N -0.87 -21.35 12.92 55.43 0.72 -20.64 16 15 Si 0.90 18.92 29.54 -169.99 -5.02 13.90 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 C -0.02 -0.36 4.43 -104.62 -0.46 -0.83 16 20 C -0.08 -1.73 8.02 -39.58 -0.32 -2.05 16 21 C -0.14 -2.50 10.05 -39.58 -0.40 -2.90 16 22 C -0.15 -2.54 10.05 -39.58 -0.40 -2.94 16 23 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 24 C -0.11 -2.21 9.67 -39.58 -0.38 -2.59 16 25 C -0.05 -0.74 8.27 -38.67 -0.32 -1.06 16 26 C -0.18 -2.62 5.89 -104.84 -0.62 -3.23 16 27 C 0.57 7.79 7.98 -12.33 -0.10 7.69 16 28 N -0.85 -8.78 8.83 30.53 0.27 -8.51 16 29 O -0.54 -8.28 14.20 5.32 0.08 -8.20 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.31 5.87 -51.93 -0.30 1.01 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.42 6.04 8.79 -40.82 -0.36 5.68 16 35 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 36 H 0.11 2.32 7.79 -52.48 -0.41 1.91 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 40 H 0.12 2.28 7.95 -52.49 -0.42 1.86 16 41 H 0.15 2.27 4.81 -52.48 -0.25 2.01 16 42 H 0.41 3.96 6.97 -40.82 -0.28 3.68 16 43 H 0.40 3.33 8.93 -40.82 -0.36 2.97 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -27.99 367.56 -8.36 -36.34 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -4.85 Total: 17.29 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -5.01 Total: -7.16 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: 0.84 Total: -46.86 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.14 Total: -19.05 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.99 -8.36 -36.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433541121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.010 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds