Wall clock time and date at job start Tue Mar 31 2020 23:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31692 * 119.63917 * 2 1 4 4 C 1.31858 * 121.95505 * 179.97438 * 3 2 1 5 5 C 1.38990 * 120.98449 * 359.97438 * 4 3 2 6 6 N 1.39979 * 120.42077 * 180.02562 * 5 4 3 7 7 C 1.34776 * 120.00264 * 145.26995 * 6 5 4 8 8 O 1.21296 * 119.99503 * 5.11440 * 7 6 5 9 9 C 1.50693 * 120.00203 * 185.11306 * 7 6 5 10 10 H 1.08998 * 109.46950 * 299.99618 * 9 7 6 11 11 C 1.50700 * 109.47364 * 60.00390 * 9 7 6 12 12 H 1.08000 * 119.99565 * 25.23762 * 11 9 7 13 13 C 1.37873 * 119.99878 * 205.24389 * 11 9 7 14 14 N 1.31514 * 120.00256 * 5.09902 * 13 11 9 15 15 Si 1.86803 * 120.00068 * 185.09925 * 13 11 9 16 16 H 1.48503 * 109.46899 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47253 * 119.99762 * 15 13 11 18 18 H 1.48495 * 109.47139 * 240.00333 * 15 13 11 19 19 C 1.50707 * 109.47198 * 179.97438 * 9 7 6 20 20 C 1.38235 * 120.00057 * 302.90653 * 19 9 7 21 21 C 1.38231 * 120.00130 * 179.78474 * 20 19 9 22 22 C 1.38242 * 119.99732 * 0.43810 * 21 20 19 23 23 C 1.38232 * 120.00105 * 359.81669 * 22 21 20 24 24 C 1.38235 * 119.99634 * 123.17058 * 19 9 7 25 25 C 1.38988 * 119.15511 * 0.27420 * 5 4 3 26 26 C 1.39544 * 119.63522 * 179.97438 * 2 1 3 27 27 C 1.47855 * 120.52829 * 0.04108 * 26 2 1 28 28 N 1.34770 * 120.00202 * 185.82838 * 27 26 2 29 29 O 1.21556 * 119.99476 * 5.83084 * 27 26 2 30 30 H 1.09003 * 109.47194 * 97.10820 * 1 2 3 31 31 H 1.08998 * 109.47386 * 217.11028 * 1 2 3 32 32 H 1.08997 * 109.47222 * 337.11031 * 1 2 3 33 33 H 1.08003 * 119.50389 * 179.97438 * 4 3 2 34 34 H 0.97006 * 120.00010 * 325.27518 * 6 5 4 35 35 H 0.97007 * 120.00333 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99827 * 359.97438 * 20 19 9 37 37 H 1.07992 * 120.00361 * 180.26868 * 21 20 19 38 38 H 1.08003 * 120.00179 * 179.83174 * 22 21 20 39 39 H 1.08001 * 120.00286 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.00433 * 359.97438 * 24 19 9 41 41 H 1.08006 * 120.88404 * 179.73297 * 25 5 4 42 42 H 0.97006 * 120.00252 * 0.02562 * 28 27 26 43 43 H 0.96996 * 120.00252 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1446 0.0000 4 6 3.4757 1.1979 0.0005 5 6 4.2388 0.0362 0.0016 6 7 5.6368 0.1065 0.0026 7 6 6.3576 -0.8174 0.6685 8 8 5.8010 -1.7612 1.1888 9 6 7.8548 -0.6778 0.7667 10 1 8.2862 -0.6787 -0.2343 11 6 8.1944 0.6170 1.4590 12 1 7.4861 1.0680 2.1383 13 6 9.4091 1.2259 1.2251 14 7 10.2295 0.7319 0.3238 15 14 9.8895 2.7526 2.1884 16 1 8.8001 3.1042 3.1343 17 1 11.1379 2.4866 2.9472 18 1 10.1119 3.8809 1.2490 19 6 8.4162 -1.8316 1.5572 20 6 7.9690 -2.0710 2.8431 21 6 8.4806 -3.1320 3.5665 22 6 9.4462 -3.9482 3.0073 23 6 9.8972 -3.7056 1.7233 24 6 9.3823 -2.6472 0.9982 25 6 3.5961 -1.1961 -0.0037 26 6 2.1970 -1.2129 0.0005 27 6 1.4614 -2.4955 0.0002 28 7 2.1332 -3.6577 0.1192 29 8 0.2506 -2.5015 -0.1075 30 1 -0.3634 -0.1272 -1.0198 31 1 -0.3634 -0.8195 0.6200 32 1 -0.3633 0.9467 0.3997 33 1 3.9692 2.1586 0.0001 34 1 6.0869 0.8203 -0.4758 35 1 11.0840 1.1605 0.1589 36 1 7.2175 -1.4310 3.2814 37 1 8.1281 -3.3217 4.5695 38 1 9.8479 -4.7755 3.5734 39 1 10.6512 -4.3434 1.2863 40 1 9.7345 -2.4578 -0.0049 41 1 4.1616 -2.1163 -0.0073 42 1 3.0994 -3.6528 0.2055 43 1 1.6506 -4.4991 0.1187 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433541121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:14 Heat of formation + Delta-G solvation = -33.772971 kcal Electronic energy + Delta-G solvation = -28733.919219 eV Core-core repulsion = 24742.853847 eV Total energy + Delta-G solvation = -3991.065372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15246 -40.97664 -39.92470 -39.25461 -36.18893 -35.57864 -35.07483 -33.23476 -33.00320 -32.30483 -31.50276 -29.41695 -27.98900 -25.90907 -25.77095 -23.72651 -23.21569 -22.64901 -21.80947 -21.09303 -19.34559 -18.81318 -18.51347 -17.63431 -17.56723 -17.31961 -17.08619 -16.71144 -16.38353 -16.18023 -15.85712 -15.75030 -15.21802 -14.99841 -14.87149 -14.70388 -14.29662 -14.04269 -13.96719 -13.58932 -13.44818 -13.32915 -13.31310 -13.03451 -12.85025 -12.78850 -12.22368 -11.97661 -11.76702 -11.67983 -11.38469 -11.30719 -10.89714 -10.76840 -10.68060 -10.63789 -10.27260 -9.52575 -9.27883 -9.25239 -8.22053 -6.33209 -0.48298 0.04808 0.78561 0.80728 1.41747 1.47061 1.54350 1.63068 1.82094 2.15692 2.41862 2.43864 2.71707 3.08338 3.27009 3.32531 3.57454 3.68219 3.77954 4.01686 4.23480 4.29088 4.31573 4.39589 4.46492 4.53213 4.68118 4.76450 4.81339 4.88868 4.98096 5.02213 5.06973 5.11669 5.34888 5.37995 5.45510 5.65455 5.67733 5.81822 5.82264 5.84493 5.94686 6.20625 6.23333 6.38061 6.49443 6.73205 6.78616 7.16706 7.25746 7.35957 8.85176 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011432 B = 0.003741 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.715173 B = 7483.511507 C = 9354.960722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.151 3.849 3 N -0.480 5.480 4 C 0.110 3.890 5 C 0.085 3.915 6 N -0.654 5.654 7 C 0.533 3.467 8 O -0.559 6.559 9 C 0.060 3.940 10 H 0.072 0.928 11 C -0.520 4.520 12 H 0.056 0.944 13 C 0.042 3.958 14 N -0.897 5.897 15 Si 0.947 3.053 16 H -0.270 1.270 17 H -0.289 1.289 18 H -0.274 1.274 19 C -0.039 4.039 20 C -0.105 4.105 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.133 4.133 24 C -0.130 4.130 25 C -0.050 4.050 26 C -0.187 4.187 27 C 0.572 3.428 28 N -0.831 5.831 29 O -0.558 6.558 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.188 0.812 34 H 0.427 0.573 35 H 0.267 0.733 36 H 0.094 0.906 37 H 0.131 0.869 38 H 0.143 0.857 39 H 0.136 0.864 40 H 0.108 0.892 41 H 0.154 0.846 42 H 0.411 0.589 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 -5.061 -1.392 9.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.012 3.988 3 N -0.189 5.189 4 C -0.050 4.050 5 C -0.013 4.013 6 N -0.299 5.299 7 C 0.324 3.676 8 O -0.437 6.437 9 C 0.039 3.961 10 H 0.089 0.911 11 C -0.558 4.558 12 H 0.074 0.926 13 C -0.161 4.161 14 N -0.533 5.533 15 Si 0.773 3.227 16 H -0.195 1.195 17 H -0.215 1.215 18 H -0.200 1.200 19 C -0.040 4.040 20 C -0.123 4.123 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.079 4.079 26 C -0.193 4.193 27 C 0.357 3.643 28 N -0.395 5.395 29 O -0.439 6.439 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.205 0.795 34 H 0.266 0.734 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.149 0.851 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.126 0.874 41 H 0.171 0.829 42 H 0.242 0.758 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.490 -4.755 -1.180 10.680 hybrid contribution 1.814 0.234 0.248 1.846 sum -7.675 -4.521 -0.932 8.956 Atomic orbital electron populations 1.20924 0.86594 1.03780 1.04086 1.21740 0.98355 0.86698 0.92002 1.67681 1.09001 1.28457 1.13752 1.23257 0.89008 0.98286 0.94493 1.18919 0.84918 0.94990 1.02469 1.43403 1.02817 1.31713 1.51998 1.21597 0.91192 0.80054 0.74784 1.90538 1.73327 1.32356 1.47504 1.17954 0.86020 0.93702 0.98471 0.91063 1.20765 1.02578 1.04874 1.27557 0.92590 1.25450 0.96224 0.99404 0.95002 1.69969 1.10052 1.41347 1.31960 0.85674 0.78015 0.79986 0.79031 1.19466 1.21502 1.19972 1.20016 0.95570 0.93557 0.94855 1.20811 0.99421 0.97603 0.94505 1.21282 0.98231 0.95825 1.00218 1.21246 0.98326 1.00658 0.95759 1.21291 1.00562 0.97877 0.95347 1.21084 0.97907 0.95654 1.00206 1.21966 0.92892 0.98978 0.94033 1.20683 0.93493 0.95378 1.09730 1.17932 0.86467 0.84390 0.75489 1.43645 1.12578 1.08041 1.75260 1.90745 1.14205 1.87574 1.51390 0.89719 0.89037 0.90390 0.79498 0.73388 0.92362 0.88746 0.85061 0.83952 0.84624 0.87417 0.82895 0.75831 0.75081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 8.85 71.23 0.63 -1.75 16 2 C 0.15 4.28 6.82 42.89 0.29 4.58 16 3 N -0.48 -13.71 10.25 -182.38 -1.87 -15.58 16 4 C 0.11 2.96 11.11 84.87 0.94 3.91 16 5 C 0.08 2.51 6.32 38.20 0.24 2.76 16 6 N -0.65 -20.84 5.23 -303.28 -1.59 -22.43 16 7 C 0.53 20.54 6.82 87.66 0.60 21.14 16 8 O -0.56 -22.57 12.35 -3.08 -0.04 -22.61 16 9 C 0.06 2.58 2.29 -13.03 -0.03 2.55 16 10 H 0.07 3.29 7.27 -2.39 -0.02 3.27 16 11 C -0.52 -24.11 7.85 25.60 0.20 -23.91 16 12 H 0.06 2.64 7.81 -2.91 -0.02 2.62 16 13 C 0.04 2.01 5.45 84.65 0.46 2.47 16 14 N -0.90 -44.50 12.92 21.45 0.28 -44.23 16 15 Si 0.95 38.87 29.54 68.60 2.03 40.89 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 C -0.04 -1.68 4.43 -19.86 -0.09 -1.77 16 20 C -0.11 -4.35 8.02 22.27 0.18 -4.17 16 21 C -0.14 -4.81 10.05 22.27 0.22 -4.58 16 22 C -0.14 -4.51 10.05 22.27 0.22 -4.29 16 23 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 24 C -0.13 -5.26 9.67 22.27 0.22 -5.04 16 25 C -0.05 -1.47 8.27 22.86 0.19 -1.28 16 26 C -0.19 -5.27 5.89 -20.01 -0.12 -5.39 16 27 C 0.57 15.06 7.98 86.79 0.69 15.76 16 28 N -0.83 -16.32 8.83 -175.60 -1.55 -17.87 16 29 O -0.56 -16.75 14.20 -3.89 -0.06 -16.80 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 2.39 5.87 -2.39 -0.01 2.38 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.19 4.03 8.06 -2.91 -0.02 4.00 16 34 H 0.43 12.31 8.79 -92.70 -0.81 11.50 16 35 H 0.27 12.77 8.31 -92.70 -0.77 12.00 16 36 H 0.09 4.08 7.79 -2.91 -0.02 4.06 16 37 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.11 4.38 7.95 -2.91 -0.02 4.36 16 41 H 0.15 4.48 4.81 -2.91 -0.01 4.47 16 42 H 0.41 7.63 6.97 -92.70 -0.65 6.99 16 43 H 0.42 6.30 8.93 -92.71 -0.83 5.47 16 Total: -1.00 -59.33 367.56 1.10 -58.23 By element: Atomic # 1 Polarization: 44.91 SS G_CDS: -1.19 Total: 43.72 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.08 Total: -3.33 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -4.73 Total: -100.10 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.09 Total: -39.41 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Total: -59.33 1.10 -58.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433541121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.457 kcal (2) G-P(sol) polarization free energy of solvation -59.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds