Wall clock time and date at job start Tue Mar 31 2020 23:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38595 * 119.54987 * 2 1 4 4 C 1.38590 * 119.35388 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48647 * 359.75456 * 4 3 2 6 6 C 1.39271 * 119.05756 * 0.50955 * 5 4 3 7 7 C 1.48178 * 119.72119 * 179.75282 * 6 5 4 8 8 O 1.21514 * 119.99910 * 359.72836 * 7 6 5 9 9 N 1.34772 * 120.00098 * 179.72198 * 7 6 5 10 10 N 1.40095 * 120.00063 * 180.02562 * 9 7 6 11 11 C 1.34779 * 120.00243 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00404 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.47069 * 300.00116 * 13 11 10 15 15 C 1.50702 * 109.47018 * 59.99275 * 13 11 10 16 16 H 1.07997 * 120.00304 * 235.33770 * 15 13 11 17 17 C 1.37879 * 119.99933 * 55.33892 * 15 13 11 18 18 N 1.31516 * 119.99735 * 1.96772 * 17 15 13 19 19 Si 1.86800 * 120.00111 * 181.96427 * 17 15 13 20 20 H 1.48495 * 109.47133 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46977 * 120.00228 * 19 17 15 22 22 H 1.48496 * 109.47065 * 239.99944 * 19 17 15 23 23 C 1.50700 * 109.47580 * 179.97438 * 13 11 10 24 24 C 1.38238 * 119.99685 * 47.22350 * 23 13 11 25 25 C 1.38226 * 119.99901 * 180.02562 * 24 23 13 26 26 C 1.38242 * 120.00207 * 359.95957 * 25 24 23 27 27 C 1.38228 * 119.99589 * 359.97438 * 26 25 24 28 28 C 1.38232 * 120.00167 * 227.20237 * 23 13 11 29 29 N 1.31498 * 119.55024 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47151 * 269.97276 * 1 2 3 31 31 H 1.08998 * 109.47472 * 29.97935 * 1 2 3 32 32 H 1.09008 * 109.46939 * 149.98072 * 1 2 3 33 33 H 1.08006 * 120.32434 * 359.97438 * 3 2 1 34 34 H 1.07992 * 120.75478 * 180.02562 * 4 3 2 35 35 H 1.07995 * 120.47382 * 180.24403 * 5 4 3 36 36 H 0.97004 * 119.99781 * 0.02562 * 9 7 6 37 37 H 0.97004 * 120.00155 * 0.02562 * 10 9 7 38 38 H 0.97003 * 120.00319 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.99794 * 359.97438 * 24 23 13 40 40 H 1.08001 * 119.99981 * 179.97438 * 25 24 23 41 41 H 1.08000 * 119.99863 * 179.72257 * 26 25 24 42 42 H 1.08005 * 120.00258 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00068 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0198 0.0063 6 6 3.4821 -1.1924 0.0005 7 6 4.1692 -2.5052 0.0009 8 8 5.3833 -2.5555 0.0014 9 7 3.4477 -3.6435 0.0010 10 7 4.0973 -4.8847 0.0020 11 6 3.3758 -6.0231 0.0015 12 8 2.1639 -5.9729 0.0007 13 6 4.0746 -7.3582 0.0031 14 1 4.6996 -7.4423 -0.8859 15 6 4.9353 -7.4732 1.2348 16 1 5.9887 -7.6911 1.1391 17 6 4.3779 -7.3000 2.4840 18 7 3.0880 -7.0730 2.6027 19 14 5.4549 -7.3881 4.0077 20 1 6.8600 -7.6518 3.6061 21 1 5.3836 -6.0978 4.7395 22 1 4.9773 -8.4839 4.8888 23 6 3.0488 -8.4622 0.0028 24 6 1.9836 -8.4157 -0.8771 25 6 1.0424 -9.4280 -0.8770 26 6 1.1667 -10.4874 0.0024 27 6 2.2326 -10.5346 0.8812 28 6 3.1732 -9.5216 0.8821 29 7 2.1555 -1.1439 -0.0005 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8899 -0.5142 33 1 1.6484 2.1398 -0.0004 34 1 4.1318 2.1271 0.0010 35 1 5.3126 -0.0609 0.0108 36 1 2.4784 -3.6033 0.0003 37 1 5.0665 -4.9249 0.0030 38 1 2.6957 -6.9516 3.4815 39 1 1.8864 -7.5879 -1.5640 40 1 0.2100 -9.3914 -1.5642 41 1 0.4289 -11.2760 0.0054 42 1 2.3296 -11.3620 1.5686 43 1 4.0058 -9.5583 1.5690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436112730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:02 Heat of formation + Delta-G solvation = 24.606681 kcal Electronic energy + Delta-G solvation = -28569.337590 eV Core-core repulsion = 24580.803750 eV Total energy + Delta-G solvation = -3988.533840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72244 -39.39096 -38.55292 -37.33101 -34.61694 -33.70238 -33.17665 -32.81837 -30.94761 -30.20039 -29.70052 -27.93782 -27.17059 -24.79133 -23.86827 -22.40405 -21.33792 -20.99361 -20.87238 -19.65239 -17.97221 -17.22221 -16.68901 -16.36204 -16.02175 -15.51897 -15.36784 -15.15723 -14.91348 -14.44479 -14.30370 -14.09524 -13.81199 -13.65603 -13.33945 -13.29183 -12.71243 -12.54985 -12.44309 -12.28380 -12.18466 -12.15691 -12.11017 -11.35953 -11.00870 -10.78397 -10.61363 -10.39972 -10.30405 -10.14169 -10.07264 -9.73533 -9.64202 -9.44435 -9.17543 -8.80118 -8.53063 -7.72755 -7.52010 -7.44959 -6.19335 -4.36371 0.52066 1.01815 2.37387 2.57767 2.65958 2.75493 3.19869 3.30311 3.32108 3.72795 3.82725 4.04131 4.29017 4.41861 4.49789 4.75473 4.86799 4.94210 5.06427 5.11998 5.32528 5.36361 5.39854 5.41492 5.78528 5.83992 5.87833 5.90937 5.94950 6.03289 6.24731 6.38883 6.40624 6.63968 6.69979 6.82933 7.08644 7.16838 7.28890 7.42236 7.52256 7.60582 7.65436 7.69799 7.73040 8.11584 8.22549 8.38135 8.51865 8.69791 9.31651 9.49838 10.80978 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.003320 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.982251 B = 8432.327716 C = 9642.638497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.128 3.872 3 C -0.154 4.154 4 C -0.078 4.078 5 C -0.118 4.118 6 C 0.101 3.899 7 C 0.558 3.442 8 O -0.544 6.544 9 N -0.490 5.490 10 N -0.528 5.528 11 C 0.551 3.449 12 O -0.542 6.542 13 C 0.069 3.931 14 H 0.065 0.935 15 C -0.545 4.545 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.842 5.842 19 Si 0.889 3.111 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.281 1.281 23 C -0.016 4.016 24 C -0.100 4.100 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.062 4.062 29 N -0.460 5.460 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.437 0.563 37 H 0.428 0.572 38 H 0.266 0.734 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.538 12.488 -5.576 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.012 4.012 3 C -0.175 4.175 4 C -0.104 4.104 5 C -0.139 4.139 6 C -0.039 4.039 7 C 0.341 3.659 8 O -0.421 6.421 9 N -0.232 5.232 10 N -0.279 5.279 11 C 0.340 3.660 12 O -0.416 6.416 13 C 0.047 3.953 14 H 0.083 0.917 15 C -0.582 4.582 16 H 0.091 0.909 17 C -0.134 4.134 18 N -0.474 5.474 19 Si 0.716 3.284 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.207 1.207 23 C -0.017 4.017 24 C -0.118 4.118 25 C -0.162 4.162 26 C -0.161 4.161 27 C -0.165 4.165 28 C -0.080 4.080 29 N -0.172 5.172 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.280 0.720 37 H 0.270 0.730 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.207 11.656 -5.435 13.255 hybrid contribution 0.737 0.996 1.318 1.809 sum -2.470 12.653 -4.117 13.533 Atomic orbital electron populations 1.20760 0.88246 1.03800 1.03499 1.21342 0.97269 0.87829 0.94761 1.22176 0.95050 0.99365 1.00858 1.21602 0.94394 0.98213 0.96205 1.22080 1.02405 0.91546 0.97864 1.20927 0.89524 0.93517 0.99885 1.17789 0.86684 0.82298 0.79082 1.90784 1.12516 1.86535 1.52260 1.44596 1.10074 0.97390 1.71170 1.45371 1.09352 0.94136 1.79034 1.21735 0.87641 0.84259 0.72326 1.90570 1.14441 1.86745 1.49819 1.17796 0.93058 0.85639 0.98838 0.91698 1.20793 0.95271 1.53241 0.88917 0.90916 1.25080 0.94910 0.94133 0.99327 1.70065 1.09751 1.43347 1.24245 0.86551 0.80974 0.77861 0.82974 1.19269 1.20965 1.20706 1.19710 0.94641 0.94372 0.93012 1.20978 0.94675 0.96759 0.99406 1.20818 0.99373 0.95639 1.00385 1.20793 0.98524 0.98635 0.98108 1.20995 0.96332 0.99459 0.99763 1.21148 0.98301 0.92130 0.96372 1.67440 1.08579 1.30299 1.10909 0.90080 0.90560 0.89966 0.84301 0.83982 0.83224 0.72038 0.72996 0.92408 0.87440 0.88023 0.88141 0.87948 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.17 36.01 0.37 -0.52 16 2 C 0.13 1.44 6.78 -82.60 -0.56 0.88 16 3 C -0.15 -1.36 9.75 -39.32 -0.38 -1.74 16 4 C -0.08 -0.71 10.17 -39.31 -0.40 -1.11 16 5 C -0.12 -1.44 9.63 -39.05 -0.38 -1.82 16 6 C 0.10 1.54 6.75 -83.01 -0.56 0.98 16 7 C 0.56 10.27 7.93 -12.18 -0.10 10.17 16 8 O -0.54 -10.93 16.16 5.35 0.09 -10.85 16 9 N -0.49 -9.70 6.25 30.61 0.19 -9.51 16 10 N -0.53 -11.34 6.16 31.22 0.19 -11.15 16 11 C 0.55 13.00 5.57 -10.99 -0.06 12.94 16 12 O -0.54 -14.00 13.79 5.55 0.08 -13.92 16 13 C 0.07 1.61 2.78 -94.08 -0.26 1.35 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.54 -13.20 7.12 -34.44 -0.25 -13.44 16 16 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.07 1.86 3.99 -17.82 -0.07 1.79 16 18 N -0.84 -22.79 10.88 55.43 0.60 -22.19 16 19 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.02 -0.38 4.52 -104.62 -0.47 -0.85 16 24 C -0.10 -2.21 8.21 -39.59 -0.33 -2.54 16 25 C -0.14 -2.89 10.05 -39.58 -0.40 -3.29 16 26 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 27 C -0.15 -3.02 10.05 -39.59 -0.40 -3.42 16 28 C -0.06 -1.41 8.20 -39.58 -0.32 -1.73 16 29 N -0.46 -6.70 9.45 -6.06 -0.06 -6.76 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.15 1.73 7.64 -52.49 -0.40 1.33 16 36 H 0.44 8.68 7.33 -182.60 -1.34 7.35 16 37 H 0.43 8.91 7.89 -182.60 -1.44 7.47 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.11 2.34 7.01 -52.49 -0.37 1.98 16 40 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 43 H 0.13 3.05 6.02 -52.49 -0.32 2.73 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -31.29 370.06 -10.53 -41.82 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -7.21 Total: 17.39 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -4.96 Total: -5.50 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.93 Total: -49.62 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: 0.16 Total: -24.77 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.29 -10.53 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436112730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.428 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds