Wall clock time and date at job start Tue Mar 31 2020 23:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38595 * 119.54987 * 2 1 4 4 C 1.38590 * 119.35388 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48647 * 359.75456 * 4 3 2 6 6 C 1.39271 * 119.05756 * 0.50955 * 5 4 3 7 7 C 1.48178 * 119.72119 * 179.75282 * 6 5 4 8 8 O 1.21514 * 119.99910 * 359.72836 * 7 6 5 9 9 N 1.34772 * 120.00098 * 179.72198 * 7 6 5 10 10 N 1.40095 * 120.00063 * 180.02562 * 9 7 6 11 11 C 1.34779 * 120.00243 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00404 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.47069 * 300.00116 * 13 11 10 15 15 C 1.50702 * 109.47018 * 59.99275 * 13 11 10 16 16 H 1.07997 * 120.00304 * 235.33770 * 15 13 11 17 17 C 1.37879 * 119.99933 * 55.33892 * 15 13 11 18 18 N 1.31516 * 119.99735 * 1.96772 * 17 15 13 19 19 Si 1.86800 * 120.00111 * 181.96427 * 17 15 13 20 20 H 1.48495 * 109.47133 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46977 * 120.00228 * 19 17 15 22 22 H 1.48496 * 109.47065 * 239.99944 * 19 17 15 23 23 C 1.50700 * 109.47580 * 179.97438 * 13 11 10 24 24 C 1.38238 * 119.99685 * 47.22350 * 23 13 11 25 25 C 1.38226 * 119.99901 * 180.02562 * 24 23 13 26 26 C 1.38242 * 120.00207 * 359.95957 * 25 24 23 27 27 C 1.38228 * 119.99589 * 359.97438 * 26 25 24 28 28 C 1.38232 * 120.00167 * 227.20237 * 23 13 11 29 29 N 1.31498 * 119.55024 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47151 * 269.97276 * 1 2 3 31 31 H 1.08998 * 109.47472 * 29.97935 * 1 2 3 32 32 H 1.09008 * 109.46939 * 149.98072 * 1 2 3 33 33 H 1.08006 * 120.32434 * 359.97438 * 3 2 1 34 34 H 1.07992 * 120.75478 * 180.02562 * 4 3 2 35 35 H 1.07995 * 120.47382 * 180.24403 * 5 4 3 36 36 H 0.97004 * 119.99781 * 0.02562 * 9 7 6 37 37 H 0.97004 * 120.00155 * 0.02562 * 10 9 7 38 38 H 0.97003 * 120.00319 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.99794 * 359.97438 * 24 23 13 40 40 H 1.08001 * 119.99981 * 179.97438 * 25 24 23 41 41 H 1.08000 * 119.99863 * 179.72257 * 26 25 24 42 42 H 1.08005 * 120.00258 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.00068 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0198 0.0063 6 6 3.4821 -1.1924 0.0005 7 6 4.1692 -2.5052 0.0009 8 8 5.3833 -2.5555 0.0014 9 7 3.4477 -3.6435 0.0010 10 7 4.0973 -4.8847 0.0020 11 6 3.3758 -6.0231 0.0015 12 8 2.1639 -5.9729 0.0007 13 6 4.0746 -7.3582 0.0031 14 1 4.6996 -7.4423 -0.8859 15 6 4.9353 -7.4732 1.2348 16 1 5.9887 -7.6911 1.1391 17 6 4.3779 -7.3000 2.4840 18 7 3.0880 -7.0730 2.6027 19 14 5.4549 -7.3881 4.0077 20 1 6.8600 -7.6518 3.6061 21 1 5.3836 -6.0978 4.7395 22 1 4.9773 -8.4839 4.8888 23 6 3.0488 -8.4622 0.0028 24 6 1.9836 -8.4157 -0.8771 25 6 1.0424 -9.4280 -0.8770 26 6 1.1667 -10.4874 0.0024 27 6 2.2326 -10.5346 0.8812 28 6 3.1732 -9.5216 0.8821 29 7 2.1555 -1.1439 -0.0005 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8899 -0.5142 33 1 1.6484 2.1398 -0.0004 34 1 4.1318 2.1271 0.0010 35 1 5.3126 -0.0609 0.0108 36 1 2.4784 -3.6033 0.0003 37 1 5.0665 -4.9249 0.0030 38 1 2.6957 -6.9516 3.4815 39 1 1.8864 -7.5879 -1.5640 40 1 0.2100 -9.3914 -1.5642 41 1 0.4289 -11.2760 0.0054 42 1 2.3296 -11.3620 1.5686 43 1 4.0058 -9.5583 1.5690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436112730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:01 Heat of formation + Delta-G solvation = 4.823782 kcal Electronic energy + Delta-G solvation = -28570.195441 eV Core-core repulsion = 24580.803750 eV Total energy + Delta-G solvation = -3989.391691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83356 -40.95102 -40.05236 -39.00213 -36.25925 -35.57914 -34.02669 -33.81421 -32.76389 -31.73958 -31.35327 -29.01543 -28.63357 -26.14836 -25.45602 -23.29779 -22.96981 -22.58314 -22.33193 -21.27233 -19.42851 -18.83095 -18.31061 -17.36707 -17.31989 -17.06003 -16.85098 -16.56757 -16.53811 -15.95159 -15.73818 -15.43889 -15.26185 -15.00442 -14.82715 -14.46552 -14.08596 -14.04859 -13.96619 -13.77250 -13.30988 -13.12420 -13.05182 -12.91254 -12.84432 -12.55858 -12.39101 -12.16768 -11.79593 -11.69937 -11.44919 -11.24018 -10.97796 -10.74709 -10.63980 -10.40060 -10.07743 -9.38555 -9.20946 -9.12925 -8.14277 -6.34052 -0.44882 0.20356 0.76774 0.91586 1.08502 1.36672 1.42910 1.49623 1.51171 2.17545 2.40401 2.74687 2.76409 3.13289 3.24194 3.40954 3.71950 3.85174 3.96785 4.06452 4.31820 4.36536 4.40869 4.48431 4.53203 4.57819 4.67977 4.74663 4.80151 4.92119 5.01971 5.06647 5.09307 5.14395 5.19324 5.43343 5.52508 5.62443 5.65428 5.75456 5.81150 5.89495 5.89537 5.96595 6.39404 6.51872 6.59877 6.73714 6.84760 6.94285 7.35704 7.70449 8.84527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.003320 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.982251 B = 8432.327716 C = 9642.638497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.111 3.889 3 C -0.132 4.132 4 C -0.069 4.069 5 C -0.120 4.120 6 C 0.065 3.935 7 C 0.559 3.441 8 O -0.568 6.568 9 N -0.498 5.498 10 N -0.528 5.528 11 C 0.552 3.448 12 O -0.569 6.569 13 C 0.060 3.940 14 H 0.079 0.921 15 C -0.539 4.539 16 H 0.077 0.923 17 C 0.040 3.960 18 N -0.871 5.871 19 Si 0.940 3.060 20 H -0.257 1.257 21 H -0.296 1.296 22 H -0.280 1.280 23 C -0.037 4.037 24 C -0.117 4.117 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.151 4.151 28 C -0.083 4.083 29 N -0.492 5.492 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.185 0.815 34 H 0.186 0.814 35 H 0.150 0.850 36 H 0.434 0.566 37 H 0.430 0.570 38 H 0.257 0.743 39 H 0.101 0.899 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 14.271 -5.731 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.030 4.030 3 C -0.151 4.151 4 C -0.094 4.094 5 C -0.142 4.142 6 C -0.073 4.073 7 C 0.345 3.655 8 O -0.447 6.447 9 N -0.241 5.241 10 N -0.277 5.277 11 C 0.342 3.658 12 O -0.446 6.446 13 C 0.038 3.962 14 H 0.097 0.903 15 C -0.577 4.577 16 H 0.095 0.905 17 C -0.165 4.165 18 N -0.505 5.505 19 Si 0.766 3.234 20 H -0.181 1.181 21 H -0.223 1.223 22 H -0.206 1.206 23 C -0.038 4.038 24 C -0.135 4.135 25 C -0.163 4.163 26 C -0.156 4.156 27 C -0.169 4.169 28 C -0.101 4.101 29 N -0.206 5.206 30 H 0.105 0.895 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.203 0.797 34 H 0.203 0.797 35 H 0.168 0.832 36 H 0.277 0.723 37 H 0.271 0.729 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.007 13.441 -5.603 15.103 hybrid contribution 0.956 0.568 1.300 1.711 sum -3.051 14.009 -4.303 14.969 Atomic orbital electron populations 1.20861 0.86445 1.04710 1.04109 1.21977 0.98628 0.87934 0.94498 1.22698 0.95106 1.00056 0.97267 1.22094 0.94832 0.98261 0.94204 1.22249 1.02493 0.91908 0.97540 1.20555 0.90350 0.92306 1.04113 1.18493 0.86606 0.83020 0.77412 1.90741 1.13567 1.87134 1.53245 1.44762 1.10004 0.96991 1.72345 1.45198 1.09318 0.94927 1.78270 1.21733 0.87297 0.84853 0.71961 1.90533 1.15507 1.87218 1.51348 1.17920 0.93468 0.85798 0.99042 0.90312 1.20998 0.95473 1.51862 0.89341 0.90513 1.25582 0.95479 0.94029 1.01380 1.70214 1.11165 1.45320 1.23837 0.85762 0.80301 0.76970 0.80329 1.18102 1.22298 1.20573 1.19781 0.95378 0.94636 0.94036 1.21048 0.95322 0.97564 0.99604 1.21192 0.99392 0.94970 1.00772 1.21204 0.98564 0.99096 0.96744 1.21314 0.95919 0.99392 1.00262 1.21132 0.99041 0.93305 0.96663 1.67327 1.08428 1.32647 1.12161 0.89524 0.87089 0.91639 0.79725 0.79697 0.83229 0.72333 0.72873 0.93366 0.88119 0.85124 0.84321 0.85492 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.17 71.24 0.72 -0.81 16 2 C 0.11 2.29 6.78 42.69 0.29 2.58 16 3 C -0.13 -1.78 9.75 22.44 0.22 -1.56 16 4 C -0.07 -0.99 10.17 22.45 0.23 -0.77 16 5 C -0.12 -2.83 9.63 22.61 0.22 -2.61 16 6 C 0.06 2.02 6.75 41.90 0.28 2.30 16 7 C 0.56 21.63 7.93 86.89 0.69 22.32 16 8 O -0.57 -23.89 16.16 -3.76 -0.06 -23.95 16 9 N -0.50 -20.92 6.25 -175.38 -1.10 -22.01 16 10 N -0.53 -23.88 6.16 -173.52 -1.07 -24.94 16 11 C 0.55 27.21 5.57 87.66 0.49 27.69 16 12 O -0.57 -30.77 13.79 -3.06 -0.04 -30.82 16 13 C 0.06 2.89 2.78 -13.03 -0.04 2.85 16 14 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 15 C -0.54 -26.74 7.12 25.60 0.18 -26.56 16 16 H 0.08 3.66 7.81 -2.91 -0.02 3.64 16 17 C 0.04 2.07 3.99 84.65 0.34 2.41 16 18 N -0.87 -48.66 10.88 21.45 0.23 -48.42 16 19 Si 0.94 42.06 29.54 68.60 2.03 44.09 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 C -0.04 -1.78 4.52 -19.87 -0.09 -1.87 16 24 C -0.12 -5.26 8.21 22.27 0.18 -5.08 16 25 C -0.15 -5.64 10.05 22.27 0.22 -5.42 16 26 C -0.14 -5.05 10.05 22.27 0.22 -4.83 16 27 C -0.15 -6.02 10.05 22.27 0.22 -5.80 16 28 C -0.08 -3.86 8.20 22.27 0.18 -3.68 16 29 N -0.49 -14.55 9.45 -173.08 -1.64 -16.19 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.11 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.15 3.40 7.64 -2.91 -0.02 3.38 16 36 H 0.43 18.49 7.33 -213.32 -1.56 16.92 16 37 H 0.43 18.82 7.89 -213.32 -1.68 17.14 16 38 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.10 4.55 7.01 -2.91 -0.02 4.53 16 40 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 43 H 0.11 5.50 6.02 -2.91 -0.02 5.49 16 Total: -1.00 -71.32 370.06 0.75 -70.57 By element: Atomic # 1 Polarization: 52.66 SS G_CDS: -2.17 Total: 50.49 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 4.57 Total: 1.18 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -3.57 Total: -111.57 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -0.10 Total: -54.76 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -71.32 0.75 -70.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436112730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.396 kcal (2) G-P(sol) polarization free energy of solvation -71.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds